17-39673258-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673258
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673258
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.391C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-42C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.582-42C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-42C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*293-42C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.582-42C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.170-42C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-42C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-42C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

17-39673259-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673259
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673259
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-43C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-43C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.170-43C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-43C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-43C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.582-43C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*293-43C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.582-43C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.390C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/17-39673277-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673277
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673277
    reference: chr 17
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-61T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-61T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+58T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-61T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+58T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.372T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-61T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+58T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+58T>G
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9503
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

17-39673279-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673279
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673279
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+56C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+56C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-63C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.370C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+56C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+56C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-63C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-63C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-63C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

17-39673285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673285
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673285
    reference: chr 17
allele count: 51
allele frequency: 4.200573254702995e-4
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-69C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-69C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-69C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+50C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+50C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+50C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.364C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+50C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-69C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9503
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

17-39673289-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673289
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673289
    reference: chr 17
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-73T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+46T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+46T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-73T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+46T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-73T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-73T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+46T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.360T>C
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

17-39673291-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673291
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673291
    reference: chr 17
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+44A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-75A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-75A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+44A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.358A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+44A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-75A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+44A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-75A>G
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 44350
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-39673291-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673291
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673290
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-76delT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+43delT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-76delT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-76delT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+43delT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+43delT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.357delT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-76delT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+43delT
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: TA
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-39673292-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673292
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673292
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.357T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-76T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+43T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-76T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+43T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+43T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+43T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-76T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-76T>G
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9512
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-39673295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673295
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673295
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-79C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+40C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.354C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-79C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+40C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-79C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+40C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-79C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+40C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44362
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

17-39673296-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673296
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673296
    reference: chr 17
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-80A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.353A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+39A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-80A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-80A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+39A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+39A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+39A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-80A>G
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

17-39673303-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673303
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673303
    reference: chr 17
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-87A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+32A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-87A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+32A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-87A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.346A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+32A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+32A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-87A>G
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum

17-39673308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673308
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673308
    reference: chr 17
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+27C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-92C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-92C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.341C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-92C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+27C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+27C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-92C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+27C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

17-39673322-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673322
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673322
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+13G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.327G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+13G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+13G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-106G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-106G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+13G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-106G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-106G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

17-39673323-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673323
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673323
    reference: chr 17
allele count: 47
allele frequency: 3.871244069583553e-4
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.326C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-107C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+12C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+12C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-107C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+12C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+12C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-107C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-107C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 15150
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

17-39673323-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673323
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673323
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+12C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-107C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.326C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+12C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-107C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-107C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-107C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+12C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+12C>G
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9513
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

17-39673327-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673327
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673327
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-111C>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+8C>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.322C>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-111C>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+8C>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+8C>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-111C>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-111C>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+8C>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: c.581+8C>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

17-39673329-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673329
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673329
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+6C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-113C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+6C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+6C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-113C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.320C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-113C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+6C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-113C>G
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44381
  bin: 6.25e1
  variant carriers: 0
hgvs: c.581+6C>G
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-39673330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673330
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673330
    reference: chr 17
allele count: 6
allele frequency: 4.942176534545814e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.319G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-114G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-114G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-114G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-114G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+5G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+5G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+5G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+5G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.581+5G>A
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

17-39673331-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673331
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673331
    reference: chr 17
allele count: 58
allele frequency: 4.777516021152864e-4
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+4C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-115C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+4C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.318C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+4C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-115C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-115C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+4C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-115C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10525
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: c.581+4C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

17-39673332-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673332
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673332
    reference: chr 17
allele count: 4
allele frequency: 3.29489291598023e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*292+3G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-116G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.317G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-116G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.581+3G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.169+3G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.581+3G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-116G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-116G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: c.581+3G>A
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

17-39673336-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673336
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673336
    reference: chr 17
allele count: 5
allele frequency: 4.118548294097296e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.313A>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.580A>T
  hgvsp: ENSP00000254043.3:p.Lys194Ter
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-120A>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-120A>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*291A>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.580A>T
  hgvsp: ENSP00000377546.1:p.Lys194Ter
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.168A>T
  hgvsp: ENST00000497016.1:c.168A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-120A>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-120A>T
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys194Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

17-39673345-AGTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673345
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673342
    reference: chr 17
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.568_570delGAC
  hgvsp: ENSP00000377546.1:p.Asp190del
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-132_223-130delGAC
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.568_570delGAC
  hgvsp: ENSP00000254043.3:p.Asp190del
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-132_87-130delGAC
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*279_*281delGAC
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-132_87-130delGAC
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-132_87-130delGAC
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.156_158delGAC
  hgvsp: ENSP00000466687.1:p.Thr53del
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.301_303delGAC
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp190del
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: AGTC
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-39673348-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673348
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673348
    reference: chr 17
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.568G>T
  hgvsp: ENSP00000377546.1:p.Asp190Tyr
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*279G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-132G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.301G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.568G>T
  hgvsp: ENSP00000254043.3:p.Asp190Tyr
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-132G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-132G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.156G>T
  hgvsp: ENST00000497016.1:c.156G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-132G>T
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp190Tyr
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

17-39673348-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673348
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673348
    reference: chr 17
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.301G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*279G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.568G>C
  hgvsp: ENSP00000254043.3:p.Asp190His
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.156G>C
  hgvsp: ENST00000497016.1:c.156G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-132G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-132G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-132G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.568G>C
  hgvsp: ENSP00000377546.1:p.Asp190His
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-132G>C
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp190His
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-39673348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673348
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673348
    reference: chr 17
allele count: 10
allele frequency: 8.237367996177861e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*279G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-132G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.301G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.568G>A
  hgvsp: ENSP00000254043.3:p.Asp190Asn
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.156G>A
  hgvsp: ENST00000497016.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.568G>A
  hgvsp: ENSP00000377546.1:p.Asp190Asn
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-132G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-132G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-132G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 30016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp190Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-39673349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673349
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673349
    reference: chr 17
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.300C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*278C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-133C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.567C>T
  hgvsp: ENST00000393976.2:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-133C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-133C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.155C>T
  hgvsp: ENSP00000466687.1:p.Thr52Met
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.567C>T
  hgvsp: ENST00000254043.3:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-133C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr52Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/17-39673352-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673352
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673352
    reference: chr 17
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.152G>T
  hgvsp: ENSP00000466687.1:p.Arg51Leu
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-136G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-136G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.564G>T
  hgvsp: ENST00000393976.2:c.564G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.297G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-136G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.564G>T
  hgvsp: ENST00000254043.3:c.564G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*275G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-136G>T
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44433
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9521
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg51Leu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

17-39673352-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673352
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673352
    reference: chr 17
allele count: 15
allele frequency: 1.2356255560315e-4
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.564G>A
  hgvsp: ENST00000393976.2:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-136G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.297G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-136G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-136G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.152G>A
  hgvsp: ENSP00000466687.1:p.Arg51Gln
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.564G>A
  hgvsp: ENST00000254043.3:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*275G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-136G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg51Gln
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

17-39673353-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673353
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673353
    reference: chr 17
allele count: 18
allele frequency: 1.4827506672378e-4
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.563C>T
  hgvsp: ENSP00000377546.1:p.Ala188Val
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*274C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.563C>T
  hgvsp: ENSP00000254043.3:p.Ala188Val
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.151C>T
  hgvsp: ENSP00000466687.1:p.Arg51Trp
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.296C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-137C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-137C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-137C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-137C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala188Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP

17-39674582-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39674582
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39674582
    reference: chr 17
allele count: 1
allele frequency: 8.507742045261188e-6
allele num: 117540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.231G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.498G>A
  hgvsp: ENST00000393976.2:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.86G>A
  hgvsp: ENSP00000467875.1:p.Arg29Lys
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.86G>A
  hgvsp: ENSP00000466687.1:p.Arg29Lys
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.498G>A
  hgvsp: ENST00000254043.3:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.86G>A
  hgvsp: ENSP00000377550.3:p.Arg29Lys
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.86G>A
  hgvsp: ENSP00000377544.3:p.Arg29Lys
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.86G>A
  hgvsp: ENSP00000409282.1:p.Arg29Lys
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.222G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg29Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-39673355-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673355
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673355
    reference: chr 17
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-139T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-139T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*272T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.561T>G
  hgvsp: ENST00000254043.3:c.561T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.561T>G
  hgvsp: ENST00000393976.2:c.561T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.149T>G
  hgvsp: ENSP00000466687.1:p.Leu50Arg
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-139T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.294T>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-139T>G
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu50Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

17-39673363-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673363
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673363
    reference: chr 17
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-147A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-147A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-147A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*264A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.141A>G
  hgvsp: ENST00000497016.1:c.141A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.553A>G
  hgvsp: ENSP00000377546.1:p.Arg185Gly
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.553A>G
  hgvsp: ENSP00000254043.3:p.Arg185Gly
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.286A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-147A>G
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg185Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

17-39673366-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673366
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673366
    reference: chr 17
allele count: 161
allele frequency: 1.326434774011765e-3
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.550G>C
  hgvsp: ENSP00000377546.1:p.Ala184Pro
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-150G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.283G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.550G>C
  hgvsp: ENSP00000254043.3:p.Ala184Pro
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-150G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*261G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-150G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-150G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.138G>C
  hgvsp: ENSP00000466687.1:p.Met46Ile
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10534
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15132
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9510
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala184Pro
num of homozygotes: 1
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

17-39673372-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673372
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673372
    reference: chr 17
allele count: 6
allele frequency: 4.943642475776152e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.544G>A
  hgvsp: ENSP00000377546.1:p.Asp182Asn
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.132G>A
  hgvsp: ENST00000497016.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-156G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-156G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*255G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.544G>A
  hgvsp: ENSP00000254043.3:p.Asp182Asn
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.277G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-156G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-156G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9530
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp182Asn
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

17-39673377-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673377
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673377
    reference: chr 17
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.127A>G
  hgvsp: ENSP00000466687.1:p.Arg43Gly
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-161A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.539A>G
  hgvsp: ENSP00000254043.3:p.Glu180Gly
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-161A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*250A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.539A>G
  hgvsp: ENSP00000377546.1:p.Glu180Gly
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.272A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-161A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-161A>G
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44538
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu180Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

17-39673379-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673379
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673379
    reference: chr 17
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*248G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.125G>A
  hgvsp: ENSP00000466687.1:p.Trp42Ter
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.537G>A
  hgvsp: ENST00000393976.2:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-163G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-163G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.270G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-163G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-163G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.537G>A
  hgvsp: ENST00000254043.3:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Trp42Ter
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

17-39673382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673382
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673382
    reference: chr 17
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.267C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.534C>T
  hgvsp: ENST00000254043.3:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-166C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-166C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.122C>T
  hgvsp: ENSP00000466687.1:p.Ser41Phe
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-166C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*245C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.534C>T
  hgvsp: ENST00000393976.2:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-166C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44482
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser41Phe
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-39673389-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673389
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673389
    reference: chr 17
allele count: 2
allele frequency: 1.648614339647526e-5
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-173G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-173G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-173G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.527G>C
  hgvsp: ENSP00000377546.1:p.Arg176Pro
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.260G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*238G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.527G>C
  hgvsp: ENSP00000254043.3:p.Arg176Pro
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.115G>C
  hgvsp: ENSP00000466687.1:p.Gly39Arg
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-173G>C
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg176Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

17-39673389-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673389
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673389
    reference: chr 17
allele count: 3
allele frequency: 2.472921509471289e-5
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.260G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-173G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.527G>A
  hgvsp: ENSP00000254043.3:p.Arg176Gln
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*238G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.527G>A
  hgvsp: ENSP00000377546.1:p.Arg176Gln
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-173G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-173G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-173G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.115G>A
  hgvsp: ENSP00000466687.1:p.Gly39Arg
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9490
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg176Gln
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

17-39673390-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673390
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673390
    reference: chr 17
allele count: 3
allele frequency: 2.472962279082036e-5
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-174C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-174C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-174C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.526C>T
  hgvsp: ENSP00000377546.1:p.Arg176Trp
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*237C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.114C>T
  hgvsp: ENST00000497016.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.259C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-174C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.526C>T
  hgvsp: ENSP00000254043.3:p.Arg176Trp
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44432
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg176Trp
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

17-39673390-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673390
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673390
    reference: chr 17
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-174C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.526C>G
  hgvsp: ENSP00000377546.1:p.Arg176Gly
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.259C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.526C>G
  hgvsp: ENSP00000254043.3:p.Arg176Gly
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-174C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*237C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.114C>G
  hgvsp: ENST00000497016.1:c.114C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-174C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-174C>G
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44432
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg176Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-39673394-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673394
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673394
    reference: chr 17
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.522C>T
  hgvsp: ENST00000254043.3:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-178C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-178C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.110C>T
  hgvsp: ENSP00000466687.1:p.Thr37Ile
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-178C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.522C>T
  hgvsp: ENST00000393976.2:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.255C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*233C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-178C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44394
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr37Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

17-39673395-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673395
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673395
    reference: chr 17
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-179A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.521A>G
  hgvsp: ENSP00000254043.3:p.Asn174Ser
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*232A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.109A>G
  hgvsp: ENSP00000466687.1:p.Thr37Ala
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.254A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.521A>G
  hgvsp: ENSP00000377546.1:p.Asn174Ser
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-179A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-179A>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-179A>G
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn174Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

17-39673400-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673400
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673400
    reference: chr 17
allele count: 2
allele frequency: 1.649729444371123e-5
allele num: 121232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.516C>T
  hgvsp: ENST00000393976.2:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-184C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.516C>T
  hgvsp: ENST00000254043.3:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-184C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.249C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.104C>T
  hgvsp: ENSP00000466687.1:p.Ser35Leu
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-184C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*227C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-184C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44320
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser35Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

17-39673412-CATG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673412
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673409
    reference: chr 17
allele count: 16
allele frequency: 1.322008130350002e-4
allele num: 121028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*212_*214delCAT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.89_91delCAT
  hgvsp: ENSP00000466687.1:p.Ser30del
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.501_503delCAT
  hgvsp: ENSP00000254043.3:p.Ile167del
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.501_503delCAT
  hgvsp: ENSP00000377546.1:p.Ile167del
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-199_223-197delCAT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-199_87-197delCAT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.234_236delCAT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-199_87-197delCAT
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-199_87-197delCAT
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile167del
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: CATG
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-39673416-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673416
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673416
    reference: chr 17
allele count: 1
allele frequency: 8.271572260455268e-6
allele num: 120896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-200T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-200T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.233T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-200T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.500T>C
  hgvsp: ENSP00000254043.3:p.Ile167Thr
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.88T>C
  hgvsp: ENSP00000466687.1:p.Ser30Pro
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-200T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*211T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.500T>C
  hgvsp: ENSP00000377546.1:p.Ile167Thr
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile167Thr
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

17-39673425-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673425
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673425
    reference: chr 17
allele count: 1
allele frequency: 8.3099270388406e-6
allele num: 120338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-209T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-8T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-8T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-8T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-8T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-209T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-209T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-8T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-209T>C
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9267
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
hgvs: c.499-8T>C
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

17-39673430-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673430
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673430
    reference: chr 17
allele count: 1
allele frequency: 8.340283569641367e-6
allele num: 119900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-214C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-13C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-13C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-214C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-214C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-214C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-13C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-13C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-13C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29358
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

17-39673432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673432
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673432
    reference: chr 17
allele count: 4
allele frequency: 3.342637006334297e-5
allele num: 119666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-15C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-15C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-15C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-216C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-216C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-15C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-216C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-216C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-15C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29231
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

17-39673434-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673434
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673434
    reference: chr 17
allele count: 7
allele frequency: 5.863825224500737e-5
allele num: 119376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-17G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-218G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-17G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-218G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-218G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-218G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-17G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-17G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-17G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

17-39673435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673435
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673435
    reference: chr 17
allele count: 2
allele frequency: 1.68061577762092e-5
allele num: 119004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-18C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-219C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-219C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-18C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-219C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-219C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-18C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-18C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-18C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

17-39673438-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673438
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673438
    reference: chr 17
allele count: 2
allele frequency: 1.682170673036486e-5
allele num: 118894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-222C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-21C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-222C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-222C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-21C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-21C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-21C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-222C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-21C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-39673445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673445
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673445
    reference: chr 17
allele count: 1
allele frequency: 8.469838903664053e-6
allele num: 118066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-229C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-229C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-28C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-28C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-229C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-229C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-28C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-28C>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-28C>T
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

17-39673447-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673447
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673447
    reference: chr 17
allele count: 1
allele frequency: 8.497620666213461e-6
allele num: 117680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-231T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-30T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-231T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-30T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-30T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-30T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-30T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-231T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-231T>C
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40069
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

17-39673448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673448
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673448
    reference: chr 17
allele count: 1
allele frequency: 8.531840829977476e-6
allele num: 117208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-31G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-232G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-31G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-232G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-232G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-31G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-31G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-232G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-31G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39529
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

17-39673452-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673452
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673452
    reference: chr 17
allele count: 4
allele frequency: 3.419271011420365e-5
allele num: 116984
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-35A>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-35A>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-236A>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-35A>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-35A>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-35A>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-236A>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-236A>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-236A>C
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD

17-39673453-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673453
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673453
    reference: chr 17
allele count: 1
allele frequency: 8.591065292096219e-6
allele num: 116400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-237G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-36G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-36G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-237G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-36G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-237G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-36G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-237G>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-36G>C
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4406
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-39673457-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673457
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673457
    reference: chr 17
allele count: 1
allele frequency: 8.657109218089895e-6
allele num: 115512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-40G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-40G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-40G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-40G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-40G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-241G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-241G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-241G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-241G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

17-39673468-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673468
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673468
    reference: chr 17
allele count: 1
allele frequency: 8.988440865047549e-6
allele num: 111254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-252G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-51G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-252G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-252G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-51G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-51G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-51G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-252G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-51G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7508
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

17-39673475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673475
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673475
    reference: chr 17
allele count: 2
allele frequency: 1.839486415392822e-5
allele num: 108726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-58G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-259G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-58G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-259G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-58G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-259G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-259G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-58G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-58G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23886
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10671
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-39673480-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673480
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673480
    reference: chr 17
allele count: 1
allele frequency: 9.592510168060779e-6
allele num: 104248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-264G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-63G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-63G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-63G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-264G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-63G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-63G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-264G>T
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-264G>T
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14680
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

17-39673484-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673484
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673484
    reference: chr 17
allele count: 1
allele frequency: 9.725734292939117e-6
allele num: 102820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-67G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-67G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-268G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-268G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-67G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-67G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-268G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-67G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-268G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16017
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-39673489-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673489
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673489
    reference: chr 17
allele count: 19
allele frequency: 1.880480611255171e-4
allele num: 101038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-273G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-273G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-72G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-273G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-273G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-72G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-72G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-72G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-72G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16575
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15657
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17689
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3724
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

17-39673496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673496
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673496
    reference: chr 17
allele count: 1
allele frequency: 1.029505631395804e-5
allele num: 97134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-79G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-280G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-280G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*210-79G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-79G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-280G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-79G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-280G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-79G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

17-39673755-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673755
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673755
    reference: chr 17
allele count: 1
allele frequency: 8.47457627118644e-4
allele num: 1180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-539G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-338G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-338G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.*43G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-539G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-539G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-338G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-338G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-539G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

17-39673823-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673823
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673823
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-607T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-406T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-607T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.125T>C
  hgvsp: ENSP00000467875.1:p.Val42Ala
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-406T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-406T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-607T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-406T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-607T>C
  variant of: http://identifiers.org/hgnc/6421
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val42Ala
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

17-39673889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39673889
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39673889
    reference: chr 17
allele count: 2
allele frequency: 3.333333333333333e-2
allele num: 60
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.87-673G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.499-472G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.87-673G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.87-472G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.223-673G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.499-472G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.87-28G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.87-673G>A
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.232-472G>A
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

17-39674537-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39674537
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39674537
    reference: chr 17
allele count: 2
allele frequency: 1.768190257271682e-5
allele num: 113110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.86+45C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.231+45C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.86+45C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.498+45C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.222+45C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.498+45C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.86+45C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.86+45C>G
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.86+45C>G
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9864
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2838
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

17-39674540-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39674540
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 39674540
    reference: chr 17
allele count: 33778
allele frequency: 2.981972915232092e-1
allele num: 113274
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000474031
  gene symbol: KRT15
  hgvsc: ENST00000474031.1:n.222+42T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl transcript: ENST00000463447
  gene symbol: KRT15
  hgvsc: ENST00000463447.1:n.231+42T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000466687
  ensembl transcript: ENST00000497016
  gene symbol: KRT15
  hgvsc: ENST00000497016.1:c.86+42T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377544
  ensembl transcript: ENST00000393974
  gene symbol: KRT15
  hgvsc: ENST00000393974.3:c.86+42T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000254043
  ensembl transcript: ENST00000254043
  gene symbol: KRT15
  hgvsc: ENST00000254043.3:c.498+42T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377546
  ensembl transcript: ENST00000393976
  gene symbol: KRT15
  hgvsc: ENST00000393976.2:c.498+42T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000377550
  ensembl transcript: ENST00000393981
  gene symbol: KRT15
  hgvsc: ENST00000393981.3:c.86+42T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000467875
  ensembl transcript: ENST00000470004
  gene symbol: KRT15
  hgvsc: ENST00000470004.1:c.86+42T>C
  variant of: http://identifiers.org/hgnc/6421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171346
  ensembl protein: ENSP00000409282
  ensembl transcript: ENST00000458290
  gene symbol: KRT15
  hgvsc: ENST00000458290.1:c.86+42T>C
  variant of: http://identifiers.org/hgnc/6421
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 9508
  bin: 3.25e1
  variant carriers: 4208
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 7.5e0
  variant carriers: 966
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 4.25e1
  variant carriers: 3704
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 9.75e1
  variant carriers: 1105
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 4.75e1
  variant carriers: 2582
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 2.75e1
  variant carriers: 3285
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.5e0
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 8457
  bin: 3.75e1
  variant carriers: 4380
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 1.75e1
  variant carriers: 1054
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.25e1
  variant carriers: 371
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 6.25e1
  variant carriers: 720
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 1.25e1
  variant carriers: 957
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 1700
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 5.75e1
  variant carriers: 1102
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 2.25e1
  variant carriers: 1974
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.75e1
  variant carriers: 509
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 1.75e1
  variant carriers: 139
num of homozygotes: 5565
reference allele: A

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9505
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44276
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
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DP
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ClippingRankSum
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SIO_000300: 3.48e-1

VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
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SIO_000300: -2.844e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -2.274e0

FS
type: SiteQuality
SIO_000300: 8.952999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.92e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.485e0

ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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SIO_000300: 1.343e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.083e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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QD
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -3.32e-1

BaseQRankSum
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DP
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QD
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 10
allele frequency: 1.511944360447536e-3
allele num: 6614
num of homozygotes: 0

Other
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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European (Non-Finnish)
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allele count: 39
allele frequency: 5.843572070722206e-4
allele num: 66740
num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
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BaseQRankSum
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QD
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ClippingRankSum
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SIO_000300: -4.18e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Latino
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African
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Other
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European (Non-Finnish)
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allele num: 66740
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MQRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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QD
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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Other
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Latino
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African
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East Asian
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South Asian
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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FS
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Non-Finnish)
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African
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Other
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European (Finnish)
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South Asian
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MQ
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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FS
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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Latino
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South Asian
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Other
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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MQ
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FS
type: SiteQuality
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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ClippingRankSum
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MQRankSum
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FS
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ClippingRankSum
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DP
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FS
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VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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QD
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8654
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South Asian
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -9.7e-2

ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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QD
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66738
num of homozygotes: 0

Latino
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East Asian
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South Asian
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African
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European (Finnish)
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Other
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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African
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European (Finnish)
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Other
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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DP
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ClippingRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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Other
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European (Finnish)
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DP
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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FS
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VQSLOD
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MQRankSum
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QD
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DP
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ReadPosRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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allele frequency: 5.993586862057598e-5
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East Asian
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African
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European (Finnish)
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InbreedingCoeff
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DP
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QD
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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ClippingRankSum
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MQ
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DP
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ReadPosRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Other
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Latino
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ReadPosRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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MQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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DP
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993946114424431e-5
allele num: 66734
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 3.633720930232558e-4
allele num: 16512
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BaseQRankSum
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MQRankSum
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DP
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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SIO_000300: 1.0e-4

FS
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.81e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
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InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
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FS
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SIO_000300: 6.939e0

MQRankSum
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QD
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BaseQRankSum
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SIO_000300: -1.27e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

VQSLOD
type: SiteQuality
SIO_000300: -8.231000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

DP
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SIO_000300: 1.748028e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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MQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

MQ
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SIO_000300: 5.962e1

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

FS
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ClippingRankSum
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ReadPosRankSum
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DP
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VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.72e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.617234083477592e-4
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.49265719594797e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.49e-1

DP
type: SiteQuality
SIO_000300: 1.74926e6

QD
type: SiteQuality
SIO_000300: 1.191e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 2
allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.49265719594797e-5
allele num: 66732
num of homozygotes: 0

Latino
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allele frequency: 5.182242183451373e-4
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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QD
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MQRankSum
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

DP
type: SiteQuality
SIO_000300: 1.749319e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519248883352071e-5
allele num: 65822
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African
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East Asian
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allele frequency: 0.0e0
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South Asian
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Other
type: Population
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allele num: 866
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Latino
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allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: 2.11e0

BaseQRankSum
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MQ
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FS
type: SiteQuality
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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East Asian
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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DP
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FS
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VQSLOD
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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South Asian
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African
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allele frequency: 9.620935154897056e-5
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
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allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 148
allele frequency: 1.71019181881211e-2
allele num: 8654
num of homozygotes: 1

European (Non-Finnish)
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allele count: 3
allele frequency: 4.496268097479092e-5
allele num: 66722
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 5.450581395348837e-4
allele num: 16512
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MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

FS
type: SiteQuality
SIO_000300: 5.3e-1

BaseQRankSum
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SIO_000300: -7.46e-1

ReadPosRankSum
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SIO_000300: 6.54e-1

VQSLOD
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ClippingRankSum
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SIO_000300: -1.57e-1

DP
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InbreedingCoeff
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.995743022454058e-5
allele num: 66714
num of homozygotes: 0

InbreedingCoeff
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FS
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QD
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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SIO_000300: 1.25e0

BaseQRankSum
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66714
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 1.742408e6

InbreedingCoeff
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MQRankSum
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SIO_000300: -1.001e0

FS
type: SiteQuality
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MQ
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BaseQRankSum
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SIO_000300: 3.88e0

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66710
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East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.141e0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
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DP
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

Other
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African
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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FS
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VQSLOD
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ReadPosRankSum
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MQ
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QD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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Latino
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African
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European (Non-Finnish)
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InbreedingCoeff
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DP
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QD
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
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allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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FS
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SIO_000300: 4.031e0

VQSLOD
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BaseQRankSum
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SIO_000300: -5.194e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

MQRankSum
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SIO_000300: -4.43e-1

QD
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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MQ
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SIO_000300: 5.983e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.001290554938624e-5
allele num: 66638
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.403051875882371e-4
allele num: 66582
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.63e0

MQRankSum
type: SiteQuality
SIO_000300: -2.027e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

MQ
type: SiteQuality
SIO_000300: 5.617e1

DP
type: SiteQuality
SIO_000300: 1.735214e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.099e1

BaseQRankSum
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SIO_000300: 7.69e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.7602e1

DP
type: SiteQuality
SIO_000300: 1.733272e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.56e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66404
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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QD
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MQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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allele num: 15608
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Other
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European (Non-Finnish)
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African
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Latino
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South Asian
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East Asian
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.058233053153535e-4
allele num: 66148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.09e-1

QD
type: SiteQuality
SIO_000300: 1.469e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.78e-1

DP
type: SiteQuality
SIO_000300: 1.702067e6

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 385
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2423
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513867021920794e-5
allele num: 66056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.76e-1

FS
type: SiteQuality
SIO_000300: 2.062e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.481e1

DP
type: SiteQuality
SIO_000300: 1.695171e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.18e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

GenotypeQuality
all individuals: 238
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 255
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GenotypeQuality
all individuals: 41368
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.336362421488708e-4
allele num: 14966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.311e0

FS
type: SiteQuality
SIO_000300: 1.791e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

DP
type: SiteQuality
SIO_000300: 1.692202e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.79e-1

GenotypeQuality
all individuals: 526
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
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GenotypeQuality
all individuals: 40480
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 725
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variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52151421094273e-5
allele num: 65724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.038e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.12e0

FS
type: SiteQuality
SIO_000300: 7.912e0

DP
type: SiteQuality
SIO_000300: 1.676554e6

MQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.04e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1749
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variant carriers: 0

GenotypeQuality
all individuals: 511
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 1289
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GenotypeQuality
all individuals: 720
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GenotypeQuality
all individuals: 303
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GenotypeQuality
all individuals: 546
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GenotypeQuality
all individuals: 1924
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GenotypeQuality
all individuals: 111
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GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8940
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525180733916969e-5
allele num: 65566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.052e0

VQSLOD
type: SiteQuality
SIO_000300: 3.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.89e0

DP
type: SiteQuality
SIO_000300: 1.670685e6

QD
type: SiteQuality
SIO_000300: 1.369e1

GenotypeQuality
all individuals: 166
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
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GenotypeQuality
all individuals: 8795
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GenotypeQuality
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GenotypeQuality
all individuals: 106
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GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 249
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GenotypeQuality
all individuals: 714
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GenotypeQuality
all individuals: 558
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GenotypeQuality
all individuals: 1906
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GenotypeQuality
all individuals: 227
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GenotypeQuality
all individuals: 601
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GenotypeQuality
all individuals: 1730
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GenotypeQuality
all individuals: 1286
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GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528724737823707e-5
allele num: 65414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.341e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.422e1

DP
type: SiteQuality
SIO_000300: 1.66113e6

MQRankSum
type: SiteQuality
SIO_000300: -1.044e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.352e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.45e-1

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
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GenotypeQuality
all individuals: 113
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 244
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GenotypeQuality
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GenotypeQuality
all individuals: 164
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GenotypeQuality
all individuals: 706
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 102
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GenotypeQuality
all individuals: 8766
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GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 1896
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.12369871402327e-5
allele num: 65320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14014
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

DP
type: SiteQuality
SIO_000300: 1.657721e6

FS
type: SiteQuality
SIO_000300: 5.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

QD
type: SiteQuality
SIO_000300: 1.514e1

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.75e1
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GenotypeQuality
all individuals: 644
bin: 2.75e1
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GenotypeQuality
all individuals: 117
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 1698
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GenotypeQuality
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GenotypeQuality
all individuals: 8650
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GenotypeQuality
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GenotypeQuality
all individuals: 39070
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 145
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GenotypeQuality
all individuals: 1879
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GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536617597344725e-5
allele num: 65078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.67e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 3.739e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

QD
type: SiteQuality
SIO_000300: 1.818e1

DP
type: SiteQuality
SIO_000300: 1.648276e6

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 137
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GenotypeQuality
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GenotypeQuality
all individuals: 172
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1644
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 346
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GenotypeQuality
all individuals: 111
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GenotypeQuality
all individuals: 8349
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.790436005625879e-5
allele num: 11376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64766
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.444e0

MQRankSum
type: SiteQuality
SIO_000300: -1.255e0

QD
type: SiteQuality
SIO_000300: 1.044e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.636e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.062e0

DP
type: SiteQuality
SIO_000300: 1.631044e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.082652134423252e-5
allele num: 11010
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 1.526286e6

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.622797053000552e-5
allele num: 61622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7988
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025851456709069e-4
allele num: 9748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.444e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.03e-1

DP
type: SiteQuality
SIO_000300: 1.456835e6

FS
type: SiteQuality
SIO_000300: 9.843e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.64e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.062e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.679543164259321e-5
allele num: 59540
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.1e-1

DP
type: SiteQuality
SIO_000300: 1.322919e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.029e0

QD
type: SiteQuality
SIO_000300: 1.34e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.699928602998674e-5
allele num: 58826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

QD
type: SiteQuality
SIO_000300: 1.412e1

DP
type: SiteQuality
SIO_000300: 1.274714e6

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.852e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.586117720078618e-4
allele num: 58002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.009630818619583e-4
allele num: 9968
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.034126163391934e-4
allele num: 9670
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

BaseQRankSum
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SIO_000300: -1.92e0

InbreedingCoeff
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SIO_000300: -4.1e-3

ReadPosRankSum
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SIO_000300: 2.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

DP
type: SiteQuality
SIO_000300: 1.199504e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8976
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.074344649763644e-4
allele num: 9308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6996
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5914
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.79e-1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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FS
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DP
type: SiteQuality
SIO_000300: 1.065258e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 240
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.515151515151515e-3
allele num: 660
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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QD
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DP
type: SiteQuality
SIO_000300: 2.9376e4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.344e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.6471e4

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.68e-2

VQSLOD
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GenotypeQuality
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bin: 6.25e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.380952380952381e-2
allele num: 42
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.25e-2
allele num: 16
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.425000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.018e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.206e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.328e1

GenotypeQuality
all individuals: 22879
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4463
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3666
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.154155986818015e-5
allele num: 10924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180358829084042e-4
allele num: 8472
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.11e-1

FS
type: SiteQuality
SIO_000300: 1.633e0

DP
type: SiteQuality
SIO_000300: 2.186905e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.57e1