X-153130137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130137
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130137
    reference: chr 0
allele count: 1
allele frequency: 1.140953380644867e-5
allele num: 87646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3069C>T
  hgvsp: ENST00000361699.4:c.3069C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3075C>T
  hgvsp: ENST00000543994.1:c.3075C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3054C>T
  hgvsp: ENST00000361981.3:c.3054C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3075C>T
  hgvsp: ENST00000538883.1:c.3075C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3069C>T
  hgvsp: ENST00000370057.3:c.3069C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3054C>T
  hgvsp: ENST00000370055.1:c.3054C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3069C>T
  hgvsp: ENST00000370060.1:c.3069C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7269
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
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genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 65
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7959
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile1023Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-153130140-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130140
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130140
    reference: chr 0
allele count: 2
allele frequency: 2.281932797079126e-5
allele num: 87645
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3072C>T
  hgvsp: ENST00000543994.1:c.3072C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3072C>T
  hgvsp: ENST00000538883.1:c.3072C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3066C>T
  hgvsp: ENST00000361699.4:c.3066C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3051C>T
  hgvsp: ENST00000361981.3:c.3051C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3066C>T
  hgvsp: ENST00000370057.3:c.3066C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3066C>T
  hgvsp: ENST00000370060.1:c.3066C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3051C>T
  hgvsp: ENST00000370055.1:c.3051C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7271
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 70
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genotype quality: GenotypeQuality
  all individuals: 204
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 53
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn1022Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-153130149-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130149
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130149
    reference: chr 0
allele count: 2
allele frequency: 2.28237549641667e-5
allele num: 87628
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3063T>G
  hgvsp: ENSP00000438430.1:p.Asp1021Glu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3057T>G
  hgvsp: ENSP00000359074.3:p.Asp1019Glu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3063T>G
  hgvsp: ENSP00000439645.1:p.Asp1021Glu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3042T>G
  hgvsp: ENSP00000359072.1:p.Asp1014Glu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3057T>G
  hgvsp: ENSP00000359077.1:p.Asp1019Glu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3042T>G
  hgvsp: ENSP00000354712.3:p.Asp1014Glu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3057T>G
  hgvsp: ENSP00000355380.4:p.Asp1019Glu
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 89
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp1019Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

X-153130161-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130161
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130161
    reference: chr 0
allele count: 1
allele frequency: 1.141748016212822e-5
allele num: 87585
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3032-2A>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3032-2A>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3053-2A>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3047-2A>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3047-2A>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3047-2A>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3053-2A>G
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
hgvs: c.3047-2A>G
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

X-153130166-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130166
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130166
    reference: chr 0
allele count: 20
allele frequency: 2.283626398721169e-4
allele num: 87580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3047-7C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3047-7C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3047-7C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3053-7C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3053-7C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3032-7C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3032-7C>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 5310
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
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genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1502
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genotype depth: GenotypeDepth
  all individuals: 2429
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 37354
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  variant carriers: 19
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 8.75e1
  variant carriers: 0
hgvs: c.3047-7C>A
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD

X-153130180-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130180
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130180
    reference: chr 0
allele count: 1
allele frequency: 1.142269689873779e-5
allele num: 87545
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3032-21C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3047-21C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3053-21C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3047-21C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3053-21C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3047-21C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3032-21C>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 164
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

X-153130182-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130182
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130182
    reference: chr 0
allele count: 1
allele frequency: 1.142139226771743e-5
allele num: 87555
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3047-23C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3047-23C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3032-23C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3053-23C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3047-23C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3053-23C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3032-23C>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

X-153130185-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130185
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130185
    reference: chr 0
allele count: 2
allele frequency: 2.284826467429799e-5
allele num: 87534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3032-26C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3047-26C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3032-26C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3053-26C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3047-26C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3053-26C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3047-26C>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3452
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

X-153130193-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130193
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130193
    reference: chr 0
allele count: 3
allele frequency: 3.427748768866901e-5
allele num: 87521
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3047-34G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3032-34G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3047-34G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
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  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3053-34G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000198910
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  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3032-34G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
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  ensembl gene: ENSG00000198910
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  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
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  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3047-34G>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

X-153130238-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130238
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130238
    reference: chr 0
allele count: 1
allele frequency: 1.143432125869008e-5
allele num: 87456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3031+38G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3031+38G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3046+38G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
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  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3046+38G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
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  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3052+38G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
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  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3052+38G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3046+38G>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
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X-153130239-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130239
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130239
    reference: chr 0
allele count: 1
allele frequency: 1.142426284943964e-5
allele num: 87533
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3052+37C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3046+37C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3031+37C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
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  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3031+37C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
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  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3046+37C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
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  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3046+37C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3052+37C>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
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site quality: ReadPosRankSum

X-153130246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130246
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130246
    reference: chr 0
allele count: 1
allele frequency: 1.141917507879231e-5
allele num: 87572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3052+30G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3046+30G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3046+30G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3031+30G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3031+30G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
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  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3046+30G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3052+30G>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 443
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 1437
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12636
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 21
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genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 29589
  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 139
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 89
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 95
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-153130249-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130249
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130249
    reference: chr 0
allele count: 1
allele frequency: 1.141748016212822e-5
allele num: 87585
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3046+27A>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3046+27A>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3031+27A>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3052+27A>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3031+27A>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3046+27A>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3052+27A>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 250
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3345
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8
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num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-153130300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130300
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130300
    reference: chr 0
allele count: 1
allele frequency: 1.139692055206683e-5
allele num: 87743
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3022G>A
  hgvsp: ENSP00000355380.4:p.Glu1008Lys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3007G>A
  hgvsp: ENSP00000359072.1:p.Glu1003Lys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3022G>A
  hgvsp: ENSP00000359077.1:p.Glu1008Lys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3022G>A
  hgvsp: ENSP00000359074.3:p.Glu1008Lys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3028G>A
  hgvsp: ENSP00000439645.1:p.Glu1010Lys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3028G>A
  hgvsp: ENSP00000438430.1:p.Glu1010Lys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3007G>A
  hgvsp: ENSP00000354712.3:p.Glu1003Lys
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14
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  variant carriers: 0
hgvs: p.Glu1008Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

X-153130302-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130302
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130302
    reference: chr 0
allele count: 2
allele frequency: 2.279358132749818e-5
allele num: 87744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3020G>A
  hgvsp: ENSP00000355380.4:p.Arg1007Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3005G>A
  hgvsp: ENSP00000354712.3:p.Arg1002Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3020G>A
  hgvsp: ENSP00000359074.3:p.Arg1007Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3026G>A
  hgvsp: ENSP00000438430.1:p.Arg1009Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3005G>A
  hgvsp: ENSP00000359072.1:p.Arg1002Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3020G>A
  hgvsp: ENSP00000359077.1:p.Arg1007Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3026G>A
  hgvsp: ENSP00000439645.1:p.Arg1009Gln
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1436
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 21
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  variant carriers: 0
hgvs: p.Arg1007Gln
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

X-153130306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130306
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130306
    reference: chr 0
allele count: 1
allele frequency: 1.13960113960114e-5
allele num: 87750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3016G>A
  hgvsp: ENSP00000355380.4:p.Val1006Ile
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3016G>A
  hgvsp: ENSP00000359077.1:p.Val1006Ile
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3022G>A
  hgvsp: ENSP00000438430.1:p.Val1008Ile
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3022G>A
  hgvsp: ENSP00000439645.1:p.Val1008Ile
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3016G>A
  hgvsp: ENSP00000359074.3:p.Val1006Ile
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3001G>A
  hgvsp: ENSP00000359072.1:p.Val1001Ile
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3001G>A
  hgvsp: ENSP00000354712.3:p.Val1001Ile
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val1006Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

X-153130307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130307
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130307
    reference: chr 0
allele count: 181
allele frequency: 2.062772092175142e-3
allele num: 87746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3015C>T
  hgvsp: ENST00000370057.3:c.3015C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3015C>T
  hgvsp: ENST00000370060.1:c.3015C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3015C>T
  hgvsp: ENST00000361699.4:c.3015C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.3000C>T
  hgvsp: ENST00000361981.3:c.3000C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3021C>T
  hgvsp: ENST00000543994.1:c.3021C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.3000C>T
  hgvsp: ENST00000370055.1:c.3000C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3021C>T
  hgvsp: ENST00000538883.1:c.3021C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11110
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12661
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29821
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10064
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile1005Ile
num of homozygotes: 1
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-153130319-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130319
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130319
    reference: chr 0
allele count: 3
allele frequency: 3.418725499133923e-5
allele num: 87752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3009T>G
  hgvsp: ENST00000543994.1:c.3009T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2988T>G
  hgvsp: ENST00000370055.1:c.2988T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3009T>G
  hgvsp: ENST00000538883.1:c.3009T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3003T>G
  hgvsp: ENST00000370057.3:c.3003T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3003T>G
  hgvsp: ENST00000361699.4:c.3003T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2988T>G
  hgvsp: ENST00000361981.3:c.2988T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3003T>G
  hgvsp: ENST00000370060.1:c.3003T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38705
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro1001Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-153130322-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130322
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130322
    reference: chr 0
allele count: 2
allele frequency: 2.279150332755949e-5
allele num: 87752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.3000C>T
  hgvsp: ENST00000370057.3:c.3000C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2985C>T
  hgvsp: ENST00000361981.3:c.2985C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.3006C>T
  hgvsp: ENST00000543994.1:c.3006C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.3000C>T
  hgvsp: ENST00000370060.1:c.3000C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.3006C>T
  hgvsp: ENST00000538883.1:c.3006C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.3000C>T
  hgvsp: ENST00000361699.4:c.3000C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2985C>T
  hgvsp: ENST00000370055.1:c.2985C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38692
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly1000Gly
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

X-153130334-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130334
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130334
    reference: chr 0
allele count: 1
allele frequency: 1.139614126656714e-5
allele num: 87749
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2994C>A
  hgvsp: ENST00000543994.1:c.2994C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2994C>A
  hgvsp: ENST00000538883.1:c.2994C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2973C>A
  hgvsp: ENST00000361981.3:c.2973C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2988C>A
  hgvsp: ENST00000370057.3:c.2988C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2973C>A
  hgvsp: ENST00000370055.1:c.2973C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2988C>A
  hgvsp: ENST00000370060.1:c.2988C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2988C>A
  hgvsp: ENST00000361699.4:c.2988C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2403
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr996Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

X-153130347-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130347
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130347
    reference: chr 0
allele count: 1
allele frequency: 1.139575166377974e-5
allele num: 87752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2975A>G
  hgvsp: ENSP00000359074.3:p.Gln992Arg
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2975A>G
  hgvsp: ENSP00000359077.1:p.Gln992Arg
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2981A>G
  hgvsp: ENSP00000438430.1:p.Gln994Arg
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2981A>G
  hgvsp: ENSP00000439645.1:p.Gln994Arg
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2975A>G
  hgvsp: ENSP00000355380.4:p.Gln992Arg
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2960A>G
  hgvsp: ENSP00000359072.1:p.Gln987Arg
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2960A>G
  hgvsp: ENSP00000354712.3:p.Gln987Arg
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10052
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln992Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

X-153130349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130349
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130349
    reference: chr 0
allele count: 1
allele frequency: 1.13954919433872e-5
allele num: 87754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2973C>T
  hgvsp: ENST00000361699.4:c.2973C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2979C>T
  hgvsp: ENST00000538883.1:c.2979C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2958C>T
  hgvsp: ENST00000370055.1:c.2958C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2979C>T
  hgvsp: ENST00000543994.1:c.2979C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2973C>T
  hgvsp: ENST00000370060.1:c.2973C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2973C>T
  hgvsp: ENST00000370057.3:c.2973C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2958C>T
  hgvsp: ENST00000361981.3:c.2958C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe991Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

X-153130352-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130352
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130352
    reference: chr 0
allele count: 2
allele frequency: 2.279124360420726e-5
allele num: 87753
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2976C>G
  hgvsp: ENST00000538883.1:c.2976C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2976C>G
  hgvsp: ENST00000543994.1:c.2976C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2955C>G
  hgvsp: ENST00000370055.1:c.2955C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2955C>G
  hgvsp: ENST00000361981.3:c.2955C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2970C>G
  hgvsp: ENST00000370057.3:c.2970C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2970C>G
  hgvsp: ENST00000370060.1:c.2970C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2970C>G
  hgvsp: ENST00000361699.4:c.2970C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29865
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg990Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

X-153130353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130353
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130353
    reference: chr 0
allele count: 1
allele frequency: 1.139575166377974e-5
allele num: 87752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2975G>A
  hgvsp: ENSP00000439645.1:p.Arg992His
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2969G>A
  hgvsp: ENSP00000355380.4:p.Arg990His
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2969G>A
  hgvsp: ENSP00000359074.3:p.Arg990His
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2975G>A
  hgvsp: ENSP00000438430.1:p.Arg992His
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
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  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2969G>A
  hgvsp: ENSP00000359077.1:p.Arg990His
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
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  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2954G>A
  hgvsp: ENSP00000354712.3:p.Arg985His
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2954G>A
  hgvsp: ENSP00000359072.1:p.Arg985His
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg990His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-153130354-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130354
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130354
    reference: chr 0
allele count: 4
allele frequency: 4.558300665511897e-5
allele num: 87752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2974C>T
  hgvsp: ENSP00000439645.1:p.Arg992Cys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2974C>T
  hgvsp: ENSP00000438430.1:p.Arg992Cys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2953C>T
  hgvsp: ENSP00000354712.3:p.Arg985Cys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2968C>T
  hgvsp: ENSP00000359077.1:p.Arg990Cys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2953C>T
  hgvsp: ENSP00000359072.1:p.Arg985Cys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
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  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2968C>T
  hgvsp: ENSP00000355380.4:p.Arg990Cys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
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  ensembl protein: ENSP00000359074
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  hgvsc: ENST00000370057.3:c.2968C>T
  hgvsp: ENSP00000359074.3:p.Arg990Cys
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg990Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-153130359-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130359
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130359
    reference: chr 0
allele count: 1
allele frequency: 1.139562180210363e-5
allele num: 87753
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2963G>T
  hgvsp: ENSP00000355380.4:p.Arg988Leu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2963G>T
  hgvsp: ENSP00000359074.3:p.Arg988Leu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2969G>T
  hgvsp: ENSP00000439645.1:p.Arg990Leu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2963G>T
  hgvsp: ENSP00000359077.1:p.Arg988Leu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2969G>T
  hgvsp: ENSP00000438430.1:p.Arg990Leu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2948G>T
  hgvsp: ENSP00000359072.1:p.Arg983Leu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
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  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2948G>T
  hgvsp: ENSP00000354712.3:p.Arg983Leu
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg988Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

X-153130359-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130359
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130359
    reference: chr 0
allele count: 1
allele frequency: 1.139562180210363e-5
allele num: 87753
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2969G>A
  hgvsp: ENSP00000438430.1:p.Arg990Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2969G>A
  hgvsp: ENSP00000439645.1:p.Arg990Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2963G>A
  hgvsp: ENSP00000359077.1:p.Arg988Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2948G>A
  hgvsp: ENSP00000354712.3:p.Arg983Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2963G>A
  hgvsp: ENSP00000355380.4:p.Arg988Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2948G>A
  hgvsp: ENSP00000359072.1:p.Arg983Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2963G>A
  hgvsp: ENSP00000359074.3:p.Arg988Gln
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10049
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg988Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-153130360-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130360
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130360
    reference: chr 0
allele count: 1
allele frequency: 1.13960113960114e-5
allele num: 87750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2968C>T
  hgvsp: ENSP00000438430.1:p.Arg990Trp
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2962C>T
  hgvsp: ENSP00000359077.1:p.Arg988Trp
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2962C>T
  hgvsp: ENSP00000359074.3:p.Arg988Trp
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2947C>T
  hgvsp: ENSP00000354712.3:p.Arg983Trp
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2947C>T
  hgvsp: ENSP00000359072.1:p.Arg983Trp
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2968C>T
  hgvsp: ENSP00000439645.1:p.Arg990Trp
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2962C>T
  hgvsp: ENSP00000355380.4:p.Arg988Trp
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12631
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11218
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genotype depth: GenotypeDepth
  all individuals: 83
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genotype depth: GenotypeDepth
  all individuals: 64
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 15
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genotype quality: GenotypeQuality
  all individuals: 691
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genotype quality: GenotypeQuality
  all individuals: 3089
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg988Trp
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

X-153130378-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130378
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130378
    reference: chr 0
allele count: 1
allele frequency: 1.139653089599526e-5
allele num: 87746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2929G>T
  hgvsp: ENSP00000354712.3:p.Asp977Tyr
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2950G>T
  hgvsp: ENSP00000438430.1:p.Asp984Tyr
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2944G>T
  hgvsp: ENSP00000355380.4:p.Asp982Tyr
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2929G>T
  hgvsp: ENSP00000359072.1:p.Asp977Tyr
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2944G>T
  hgvsp: ENSP00000359077.1:p.Asp982Tyr
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2944G>T
  hgvsp: ENSP00000359074.3:p.Asp982Tyr
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2950G>T
  hgvsp: ENSP00000439645.1:p.Asp984Tyr
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12625
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
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genotype depth: GenotypeDepth
  all individuals: 41
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genotype depth: GenotypeDepth
  all individuals: 46
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genotype depth: GenotypeDepth
  all individuals: 29877
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 3086
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genotype quality: GenotypeQuality
  all individuals: 11
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 23
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 663
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp982Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-153130379-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130379
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130379
    reference: chr 0
allele count: 2
allele frequency: 2.279358132749818e-5
allele num: 87744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2949C>T
  hgvsp: ENST00000538883.1:c.2949C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2943C>T
  hgvsp: ENST00000370060.1:c.2943C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2949C>T
  hgvsp: ENST00000543994.1:c.2949C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2928C>T
  hgvsp: ENST00000370055.1:c.2928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2928C>T
  hgvsp: ENST00000361981.3:c.2928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2943C>T
  hgvsp: ENST00000370057.3:c.2943C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2943C>T
  hgvsp: ENST00000361699.4:c.2943C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 11230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12627
  bin: 3.25e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 13
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38794
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3084
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr981Thr
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

X-153130380-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130380
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130380
    reference: chr 0
allele count: 3
allele frequency: 3.418959268798577e-5
allele num: 87746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2948C>T
  hgvsp: ENSP00000439645.1:p.Thr983Ile
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2927C>T
  hgvsp: ENSP00000354712.3:p.Thr976Ile
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2942C>T
  hgvsp: ENSP00000359077.1:p.Thr981Ile
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2927C>T
  hgvsp: ENSP00000359072.1:p.Thr976Ile
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2942C>T
  hgvsp: ENSP00000355380.4:p.Thr981Ile
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2948C>T
  hgvsp: ENSP00000438430.1:p.Thr983Ile
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2942C>T
  hgvsp: ENSP00000359074.3:p.Thr981Ile
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38781
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr981Ile
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153130391-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130391
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130391
    reference: chr 0
allele count: 1
allele frequency: 1.139757003806788e-5
allele num: 87738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2937A>G
  hgvsp: ENST00000543994.1:c.2937A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2931A>G
  hgvsp: ENST00000370060.1:c.2931A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2931A>G
  hgvsp: ENST00000361699.4:c.2931A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2916A>G
  hgvsp: ENST00000361981.3:c.2916A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2916A>G
  hgvsp: ENST00000370055.1:c.2916A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2931A>G
  hgvsp: ENST00000370057.3:c.2931A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2937A>G
  hgvsp: ENST00000538883.1:c.2937A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38794
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10031
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr977Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-153130402-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130402
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130402
    reference: chr 0
allele count: 1
allele frequency: 1.139899916787306e-5
allele num: 87727
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2905G>A
  hgvsp: ENSP00000354712.3:p.Glu969Lys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2905G>A
  hgvsp: ENSP00000359072.1:p.Glu969Lys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2926G>A
  hgvsp: ENSP00000438430.1:p.Glu976Lys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2920G>A
  hgvsp: ENSP00000359074.3:p.Glu974Lys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2920G>A
  hgvsp: ENSP00000359077.1:p.Glu974Lys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2920G>A
  hgvsp: ENSP00000355380.4:p.Glu974Lys
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2926G>A
  hgvsp: ENSP00000439645.1:p.Glu976Lys
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10018
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38816
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3266
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu974Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-153130403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130403
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130403
    reference: chr 0
allele count: 9
allele frequency: 1.025991792065663e-4
allele num: 87720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2904C>T
  hgvsp: ENST00000370055.1:c.2904C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2919C>T
  hgvsp: ENST00000361699.4:c.2919C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2925C>T
  hgvsp: ENST00000538883.1:c.2925C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2904C>T
  hgvsp: ENST00000361981.3:c.2904C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2919C>T
  hgvsp: ENST00000370060.1:c.2919C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2919C>T
  hgvsp: ENST00000370057.3:c.2919C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2925C>T
  hgvsp: ENST00000543994.1:c.2925C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro973Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-153130410-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130410
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130410
    reference: chr 0
allele count: 1
allele frequency: 1.140029868782562e-5
allele num: 87717
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2897G>A
  hgvsp: ENSP00000359072.1:p.Arg966Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2918G>A
  hgvsp: ENSP00000438430.1:p.Arg973Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2912G>A
  hgvsp: ENSP00000359077.1:p.Arg971Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2912G>A
  hgvsp: ENSP00000355380.4:p.Arg971Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2897G>A
  hgvsp: ENSP00000354712.3:p.Arg966Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2918G>A
  hgvsp: ENSP00000439645.1:p.Arg973Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2912G>A
  hgvsp: ENSP00000359074.3:p.Arg971Gln
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
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genotype quality: GenotypeQuality
  all individuals: 10
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3073
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg971Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

X-153130416-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130416
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130416
    reference: chr 0
allele count: 1
allele frequency: 1.140302864440795e-5
allele num: 87696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2906A>G
  hgvsp: ENSP00000355380.4:p.Asn969Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2912A>G
  hgvsp: ENSP00000439645.1:p.Asn971Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2912A>G
  hgvsp: ENSP00000438430.1:p.Asn971Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2891A>G
  hgvsp: ENSP00000359072.1:p.Asn964Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2891A>G
  hgvsp: ENSP00000354712.3:p.Asn964Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2906A>G
  hgvsp: ENSP00000359077.1:p.Asn969Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2906A>G
  hgvsp: ENSP00000359074.3:p.Asn969Ser
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn969Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

X-153130430-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130430
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130430
    reference: chr 0
allele count: 1
allele frequency: 1.141031492469192e-5
allele num: 87640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2892G>T
  hgvsp: ENST00000370057.3:c.2892G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2898G>T
  hgvsp: ENST00000543994.1:c.2898G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2892G>T
  hgvsp: ENST00000361699.4:c.2892G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2877G>T
  hgvsp: ENST00000370055.1:c.2877G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2877G>T
  hgvsp: ENST00000361981.3:c.2877G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2892G>T
  hgvsp: ENST00000370060.1:c.2892G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2898G>T
  hgvsp: ENST00000538883.1:c.2898G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.557G>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3064
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly964Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

X-153130430-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130430
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130430
    reference: chr 0
allele count: 3
allele frequency: 3.423094477407576e-5
allele num: 87640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2892G>A
  hgvsp: ENST00000361699.4:c.2892G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.557G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2898G>A
  hgvsp: ENST00000543994.1:c.2898G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2877G>A
  hgvsp: ENST00000370055.1:c.2877G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2892G>A
  hgvsp: ENST00000370060.1:c.2892G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2898G>A
  hgvsp: ENST00000538883.1:c.2898G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2892G>A
  hgvsp: ENST00000370057.3:c.2892G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2877G>A
  hgvsp: ENST00000361981.3:c.2877G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38684
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly964Gly
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-153130433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130433
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130433
    reference: chr 0
allele count: 1
allele frequency: 1.14105753212077e-5
allele num: 87638
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2889G>A
  hgvsp: ENST00000370060.1:c.2889G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2874G>A
  hgvsp: ENST00000370055.1:c.2874G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2889G>A
  hgvsp: ENST00000361699.4:c.2889G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2874G>A
  hgvsp: ENST00000361981.3:c.2874G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2889G>A
  hgvsp: ENST00000370057.3:c.2889G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2895G>A
  hgvsp: ENST00000538883.1:c.2895G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2895G>A
  hgvsp: ENST00000543994.1:c.2895G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.554G>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys963Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

X-153130445-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130445
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130445
    reference: chr 0
allele count: 3
allele frequency: 3.425439598081754e-5
allele num: 87580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2883T>G
  hgvsp: ENSP00000439645.1:p.Asp961Glu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2877T>G
  hgvsp: ENSP00000359074.3:p.Asp959Glu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2862T>G
  hgvsp: ENSP00000359072.1:p.Asp954Glu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2877T>G
  hgvsp: ENSP00000359077.1:p.Asp959Glu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2883T>G
  hgvsp: ENSP00000438430.1:p.Asp961Glu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.542T>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2862T>G
  hgvsp: ENSP00000354712.3:p.Asp954Glu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2877T>G
  hgvsp: ENSP00000355380.4:p.Asp959Glu
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp959Glu
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

X-153130446-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130446
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130446
    reference: chr 0
allele count: 7
allele frequency: 7.993878972672354e-5
allele num: 87567
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2876A>G
  hgvsp: ENSP00000359074.3:p.Asp959Gly
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2876A>G
  hgvsp: ENSP00000359077.1:p.Asp959Gly
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.541A>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2882A>G
  hgvsp: ENSP00000438430.1:p.Asp961Gly
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2882A>G
  hgvsp: ENSP00000439645.1:p.Asp961Gly
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2861A>G
  hgvsp: ENSP00000354712.3:p.Asp954Gly
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2876A>G
  hgvsp: ENSP00000355380.4:p.Asp959Gly
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2861A>G
  hgvsp: ENSP00000359072.1:p.Asp954Gly
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp959Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-153130457-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130457
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130457
    reference: chr 0
allele count: 1
allele frequency: 1.144243311897842e-5
allele num: 87394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2858-8C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2873-8C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2858-8C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2879-8C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.538-8C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2873-8C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2873-8C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2879-8C>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38431
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
hgvs: c.2873-8C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

X-153130464-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130464
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130464
    reference: chr 0
allele count: 1
allele frequency: 1.14590853358085e-5
allele num: 87267
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2873-15T>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2873-15T>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2879-15T>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.538-15T>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2873-15T>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2879-15T>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2858-15T>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2858-15T>G
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-153130466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130466
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130466
    reference: chr 0
allele count: 3
allele frequency: 3.439420343024855e-5
allele num: 87224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2879-17C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2873-17C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.538-17C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2858-17C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2858-17C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2879-17C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2873-17C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2873-17C>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9796
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

X-153130477-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130477
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130477
    reference: chr 0
allele count: 2
allele frequency: 2.302953537912373e-5
allele num: 86845
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2873-28C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2879-28C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2873-28C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2858-28C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2858-28C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.538-28C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2873-28C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2879-28C>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 194
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

X-153130492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130492
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130492
    reference: chr 0
allele count: 1
allele frequency: 1.161251364470353e-5
allele num: 86114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2873-43G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2858-43G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2879-43G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2858-43G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.538-43G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2879-43G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2873-43G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2873-43G>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 433
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19
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  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

X-153130494-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130494
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130494
    reference: chr 0
allele count: 1
allele frequency: 1.163047650062223e-5
allele num: 85981
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2879-45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2873-45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2879-45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2873-45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.538-45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2873-45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2858-45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2858-45G>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-153130498-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130498
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130498
    reference: chr 0
allele count: 12
allele frequency: 1.397640317264352e-4
allele num: 85859
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878+45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857+45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857+45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872+45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872+45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537+45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878+45G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872+45G>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11935
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8846
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-153130499-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130499
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130499
    reference: chr 0
allele count: 18
allele frequency: 2.100080503085952e-4
allele num: 85711
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878+44G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872+44G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878+44G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857+44G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537+44G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872+44G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857+44G>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872+44G>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12028
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10706
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26947
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8775
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

X-153130499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130499
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130499
    reference: chr 0
allele count: 3
allele frequency: 3.50013417180992e-5
allele num: 85711
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857+44G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878+44G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872+44G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857+44G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878+44G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872+44G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872+44G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537+44G>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26947
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34743
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2650
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-153130500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130500
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130500
    reference: chr 0
allele count: 2
allele frequency: 2.333504456993513e-5
allele num: 85708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872+43C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857+43C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857+43C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537+43C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872+43C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878+43C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872+43C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878+43C>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2922
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153130506-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130506
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130506
    reference: chr 0
allele count: 1
allele frequency: 1.172346686362091e-5
allele num: 85299
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857+37G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878+37G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872+37G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878+37G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872+37G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872+37G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857+37G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537+37G>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 8486
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-153130512-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130512
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130512
    reference: chr 0
allele count: 26
allele frequency: 3.064194882794546e-4
allele num: 84851
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878+31G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878+31G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537+31G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857+31G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857+31G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872+31G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872+31G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872+31G>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25829
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12485
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9945
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 9.75e1
  variant carriers: 24
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

X-153130516-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130516
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130516
    reference: chr 0
allele count: 1
allele frequency: 1.180163806736375e-5
allele num: 84734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878+27G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872+27G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878+27G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857+27G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872+27G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537+27G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872+27G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857+27G>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
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genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2503
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

X-153130519-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130519
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130518
    reference: chr 0
allele count: 1
allele frequency: 1.184497299346158e-5
allele num: 84424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872+23delG
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537+23delG
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878+23delG
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857+23delG
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878+23delG
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872+23delG
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857+23delG
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872+23delG
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12473
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: TC
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-153130529-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130529
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130529
    reference: chr 0
allele count: 1
allele frequency: 1.201821962094535e-5
allele num: 83207
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872+14C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857+14C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878+14C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872+14C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857+14C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537+14C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878+14C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872+14C>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12329
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7508
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-153130531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130531
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130531
    reference: chr 0
allele count: 1
allele frequency: 1.204093919325707e-5
allele num: 83050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857+12G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872+12G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872+12G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878+12G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878+12G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857+12G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872+12G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537+12G>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5899
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

X-153130532-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130532
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130532
    reference: chr 0
allele count: 1
allele frequency: 1.205051576207462e-5
allele num: 82984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878+11C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878+11C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872+11C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872+11C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857+11C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857+11C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872+11C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537+11C>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23433
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12595
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7345
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6069
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

X-153130534-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130534
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130534
    reference: chr 0
allele count: 1
allele frequency: 1.20981889011215e-5
allele num: 82657
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872+9G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878+9G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872+9G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872+9G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878+9G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537+9G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857+9G>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857+9G>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12674
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genotype depth: GenotypeDepth
  all individuals: 8496
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31130
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

X-153130543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130543
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130543
    reference: chr 0
allele count: 1
allele frequency: 1.225670441731627e-5
allele num: 81588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857C>T
  hgvsp: ENST00000361981.3:c.2857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872C>T
  hgvsp: ENST00000370057.3:c.2872C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878C>T
  hgvsp: ENST00000538883.1:c.2878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857C>T
  hgvsp: ENST00000370055.1:c.2857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872C>T
  hgvsp: ENST00000361699.4:c.2872C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878C>T
  hgvsp: ENST00000543994.1:c.2878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872C>T
  hgvsp: ENST00000370060.1:c.2872C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29812
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 8.25e1
  variant carriers: 0
hgvs: c.2872C>T
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

X-153130543-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130543
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130543
    reference: chr 0
allele count: 267
allele frequency: 3.272540079423445e-3
allele num: 81588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.537C>G
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2872C>G
  hgvsp: ENSP00000355380.4:p.Leu958Val
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2857C>G
  hgvsp: ENSP00000359072.1:p.Leu953Val
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2872C>G
  hgvsp: ENSP00000359074.3:p.Leu958Val
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2878C>G
  hgvsp: ENSP00000439645.1:p.Leu960Val
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2872C>G
  hgvsp: ENSP00000359077.1:p.Leu958Val
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2878C>G
  hgvsp: ENSP00000438430.1:p.Leu960Val
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2857C>G
  hgvsp: ENSP00000354712.3:p.Leu953Val
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21375
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 3.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 7944
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 9.75e1
  variant carriers: 207
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Leu958Val
num of homozygotes: 3
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

X-153130560-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130560
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130560
    reference: chr 0
allele count: 1
allele frequency: 1.256028938906752e-5
allele num: 79616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2855T>C
  hgvsp: ENSP00000355380.4:p.Val952Ala
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2861T>C
  hgvsp: ENSP00000439645.1:p.Val954Ala
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2861T>C
  hgvsp: ENSP00000438430.1:p.Val954Ala
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2855T>C
  hgvsp: ENSP00000359074.3:p.Val952Ala
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.520T>C
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2855T>C
  hgvsp: ENSP00000359077.1:p.Val952Ala
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2840T>C
  hgvsp: ENSP00000359072.1:p.Val947Ala
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2840T>C
  hgvsp: ENSP00000354712.3:p.Val947Ala
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11246
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val952Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

X-153130562-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130562
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130562
    reference: chr 0
allele count: 2
allele frequency: 2.522767981028785e-5
allele num: 79278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2853C>T
  hgvsp: ENST00000370057.3:c.2853C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2853C>T
  hgvsp: ENST00000370060.1:c.2853C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.518C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2838C>T
  hgvsp: ENST00000361981.3:c.2838C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2838C>T
  hgvsp: ENST00000370055.1:c.2838C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2859C>T
  hgvsp: ENST00000538883.1:c.2859C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2853C>T
  hgvsp: ENST00000361699.4:c.2853C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2859C>T
  hgvsp: ENST00000543994.1:c.2859C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9273
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5953
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr951Tyr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-153130571-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130571
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130571
    reference: chr 0
allele count: 1
allele frequency: 1.280294979963384e-5
allele num: 78107
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2850C>T
  hgvsp: ENST00000538883.1:c.2850C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2829C>T
  hgvsp: ENST00000370055.1:c.2829C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.509C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2844C>T
  hgvsp: ENST00000361699.4:c.2844C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2844C>T
  hgvsp: ENST00000370060.1:c.2844C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2844C>T
  hgvsp: ENST00000370057.3:c.2844C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2850C>T
  hgvsp: ENST00000543994.1:c.2850C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2829C>T
  hgvsp: ENST00000361981.3:c.2829C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5484
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu948Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153130577-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130577
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130577
    reference: chr 0
allele count: 1
allele frequency: 1.297706951816141e-5
allele num: 77059
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2838C>T
  hgvsp: ENST00000370057.3:c.2838C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2838C>T
  hgvsp: ENST00000370060.1:c.2838C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2844C>T
  hgvsp: ENST00000538883.1:c.2844C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2823C>T
  hgvsp: ENST00000361981.3:c.2823C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2823C>T
  hgvsp: ENST00000370055.1:c.2823C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.503C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2838C>T
  hgvsp: ENST00000361699.4:c.2838C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2844C>T
  hgvsp: ENST00000543994.1:c.2844C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly946Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-153130580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130580
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130580
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 76355
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.500C>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2820C>T
  hgvsp: ENST00000370055.1:c.2820C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2841C>T
  hgvsp: ENST00000538883.1:c.2841C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2835C>T
  hgvsp: ENST00000361699.4:c.2835C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2841C>T
  hgvsp: ENST00000543994.1:c.2841C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2835C>T
  hgvsp: ENST00000370057.3:c.2835C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2835C>T
  hgvsp: ENST00000370060.1:c.2835C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2820C>T
  hgvsp: ENST00000361981.3:c.2820C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9102
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20238
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn945Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-153130583-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130583
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130583
    reference: chr 0
allele count: 1
allele frequency: 1.319661638755823e-5
allele num: 75777
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2838C>A
  hgvsp: ENSP00000439645.1:p.His946Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.497C>A
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2817C>A
  hgvsp: ENSP00000359072.1:p.His939Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2832C>A
  hgvsp: ENSP00000355380.4:p.His944Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2817C>A
  hgvsp: ENSP00000354712.3:p.His939Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2832C>A
  hgvsp: ENSP00000359074.3:p.His944Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2832C>A
  hgvsp: ENSP00000359077.1:p.His944Gln
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2838C>A
  hgvsp: ENSP00000438430.1:p.His946Gln
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8662
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15087
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His944Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum

X-153130584-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130584
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130584
    reference: chr 0
allele count: 1
allele frequency: 1.319052392761041e-5
allele num: 75812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2831A>C
  hgvsp: ENSP00000359074.3:p.His944Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2816A>C
  hgvsp: ENSP00000354712.3:p.His939Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.496A>C
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2837A>C
  hgvsp: ENSP00000439645.1:p.His946Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2837A>C
  hgvsp: ENSP00000438430.1:p.His946Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2831A>C
  hgvsp: ENSP00000359077.1:p.His944Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2816A>C
  hgvsp: ENSP00000359072.1:p.His939Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2831A>C
  hgvsp: ENSP00000355380.4:p.His944Pro
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15219
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His944Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

X-153130590-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130590
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130590
    reference: chr 0
allele count: 3
allele frequency: 4.058661182964446e-5
allele num: 73916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2831T>C
  hgvsp: ENSP00000438430.1:p.Leu944Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2825T>C
  hgvsp: ENSP00000359074.3:p.Leu942Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2825T>C
  hgvsp: ENSP00000355380.4:p.Leu942Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2810T>C
  hgvsp: ENSP00000354712.3:p.Leu937Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2831T>C
  hgvsp: ENSP00000439645.1:p.Leu944Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2810T>C
  hgvsp: ENSP00000359072.1:p.Leu937Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2825T>C
  hgvsp: ENSP00000359077.1:p.Leu942Pro
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.490T>C
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 12169
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3985
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16717
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu942Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

X-153130595-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130595
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130595
    reference: chr 0
allele count: 1
allele frequency: 1.34823583341198e-5
allele num: 74171
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2805C>A
  hgvsp: ENST00000361981.3:c.2805C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2805C>A
  hgvsp: ENST00000370055.1:c.2805C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2820C>A
  hgvsp: ENST00000370060.1:c.2820C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2820C>A
  hgvsp: ENST00000361699.4:c.2820C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2826C>A
  hgvsp: ENST00000543994.1:c.2826C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2820C>A
  hgvsp: ENST00000370057.3:c.2820C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2826C>A
  hgvsp: ENST00000538883.1:c.2826C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.485C>A
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14485
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro940Pro
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS

X-153130597-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130597
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130597
    reference: chr 0
allele count: 1
allele frequency: 1.360562728744609e-5
allele num: 73499
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2824C>T
  hgvsp: ENSP00000439645.1:p.Pro942Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2824C>T
  hgvsp: ENSP00000438430.1:p.Pro942Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2818C>T
  hgvsp: ENSP00000359074.3:p.Pro940Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2803C>T
  hgvsp: ENSP00000359072.1:p.Pro935Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2803C>T
  hgvsp: ENSP00000354712.3:p.Pro935Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2818C>T
  hgvsp: ENSP00000359077.1:p.Pro940Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2818C>T
  hgvsp: ENSP00000355380.4:p.Pro940Ser
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.483C>T
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10580
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4447
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15666
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro940Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

X-153130599-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153130599
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153130599
    reference: chr 0
allele count: 1
allele frequency: 1.358991085018482e-5
allele num: 73584
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359077
  ensembl transcript: ENST00000370060
  gene symbol: L1CAM
  hgvsc: ENST00000370060.1:c.2816A>T
  hgvsp: ENSP00000359077.1:p.Gln939Leu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198910
  ensembl transcript: ENST00000474853
  gene symbol: L1CAM
  hgvsc: ENST00000474853.1:n.481A>T
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000439645
  ensembl transcript: ENST00000538883
  gene symbol: L1CAM
  hgvsc: ENST00000538883.1:c.2822A>T
  hgvsp: ENSP00000439645.1:p.Gln941Leu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000354712
  ensembl transcript: ENST00000361981
  gene symbol: L1CAM
  hgvsc: ENST00000361981.3:c.2801A>T
  hgvsp: ENSP00000354712.3:p.Gln934Leu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359072
  ensembl transcript: ENST00000370055
  gene symbol: L1CAM
  hgvsc: ENST00000370055.1:c.2801A>T
  hgvsp: ENSP00000359072.1:p.Gln934Leu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000359074
  ensembl transcript: ENST00000370057
  gene symbol: L1CAM
  hgvsc: ENST00000370057.3:c.2816A>T
  hgvsp: ENSP00000359074.3:p.Gln939Leu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000438430
  ensembl transcript: ENST00000543994
  gene symbol: L1CAM
  hgvsc: ENST00000543994.1:c.2822A>T
  hgvsp: ENSP00000438430.1:p.Gln941Leu
  variant of: http://identifiers.org/hgnc/6470
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198910
  ensembl protein: ENSP00000355380
  ensembl transcript: ENST00000361699
  gene symbol: L1CAM
  hgvsc: ENST00000361699.4:c.2816A>T
  hgvsp: ENSP00000355380.4:p.Gln939Leu
  variant of: http://identifiers.org/hgnc/6470
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln939Leu
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 1621
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37344
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2384
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086506562063138e-5
allele num: 47927
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.05e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 3.44327e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.686e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.545e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.804e0

GenotypeQuality
all individuals: 2547
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7955
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2384
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37344
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.173274351055838e-5
allele num: 47924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8495
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

DP
type: SiteQuality
SIO_000300: 3.443303e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.01e-1

FS
type: SiteQuality
SIO_000300: 6.117e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.755e0

QD
type: SiteQuality
SIO_000300: 1.182e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7842
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37343
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1621
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.173535610692598e-5
allele num: 47921
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.442374e6

FS
type: SiteQuality
SIO_000300: 5.28e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.25e-1

QD
type: SiteQuality
SIO_000300: 1.753e1

MQRankSum
type: SiteQuality
SIO_000300: -4.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.224e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37343
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087944210130705e-5
allele num: 47894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.226e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.74e-2

DP
type: SiteQuality
SIO_000300: 3.441261e6

GenotypeQuality
all individuals: 3464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 7.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10115
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.174603174603175e-3
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 3.312720848056537e-3
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.263963418453637e-5
allele num: 47893
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.22e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.047e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e0

QD
type: SiteQuality
SIO_000300: 1.816e1

DP
type: SiteQuality
SIO_000300: 3.441738e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.321e1

GenotypeQuality
all individuals: 3457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073767851390529e-4
allele num: 9313
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.436e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.51e0

VQSLOD
type: SiteQuality
SIO_000300: 4.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.44e-1

DP
type: SiteQuality
SIO_000300: 3.440349e6

GenotypeQuality
all individuals: 156
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2554
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.511258878645912e-4
allele num: 6617
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47881
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10115
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.041e0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

FS
type: SiteQuality
SIO_000300: 2.509e0

DP
type: SiteQuality
SIO_000300: 3.439986e6

QD
type: SiteQuality
SIO_000300: 1.436e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8467
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.177720218076995e-5
allele num: 47873
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.43e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.942e0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 3.439826e6

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37357
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8463
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10109
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.220957698088899e-4
allele num: 9314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47867
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.462e0

VQSLOD
type: SiteQuality
SIO_000300: 2.14e-1

DP
type: SiteQuality
SIO_000300: 3.4397e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.97e-1

QD
type: SiteQuality
SIO_000300: 1.531e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.67e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.752e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
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variant carriers: 0

GenotypeQuality
all individuals: 37463
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8381
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.511258878645912e-4
allele num: 6617
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 2.865e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.941e-1

DP
type: SiteQuality
SIO_000300: 1.764638e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.633e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.097e0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47897
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.187366421277606e-4
allele num: 8422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.783e1

FS
type: SiteQuality
SIO_000300: 1.118e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 1.765963e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: -5.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.73e-1

GenotypeQuality
all individuals: 38103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10002
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3285
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087421199849706e-5
allele num: 47906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8447
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.54e-2

DP
type: SiteQuality
SIO_000300: 1.768546e6

VQSLOD
type: SiteQuality
SIO_000300: -2.426e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

MQ
type: SiteQuality
SIO_000300: 5.881e1

MQRankSum
type: SiteQuality
SIO_000300: -9.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.119e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 3290
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10007
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8455
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087246921310791e-5
allele num: 47910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.32e1

DP
type: SiteQuality
SIO_000300: 1.76901e6

VQSLOD
type: SiteQuality
SIO_000300: 2.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.77e-2

MQ
type: SiteQuality
SIO_000300: 5.912e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 692
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084071441969031e-5
allele num: 47983
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 1.45e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.21e-1

DP
type: SiteQuality
SIO_000300: 1.774617e6

FS
type: SiteQuality
SIO_000300: 9.436999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.931e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2533
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.349348055914484e-4
allele num: 8513
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.748e0

MQ
type: SiteQuality
SIO_000300: 6.009e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.454e0

VQSLOD
type: SiteQuality
SIO_000300: -1.265e0

QD
type: SiteQuality
SIO_000300: 2.091e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.12e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.73e-1

DP
type: SiteQuality
SIO_000300: 1.774539e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2531
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 38615
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08389772229979e-5
allele num: 47987
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.65e-1

FS
type: SiteQuality
SIO_000300: 4.539e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.091e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.774414e6

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 174

GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 3289
bin: 7.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084071441969031e-5
allele num: 47983
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.145002145002145e-4
allele num: 9324
num of homozygotes: 0

South Asian
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allele count: 178
allele frequency: 1.758024691358025e-2
allele num: 10125
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.418e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.778081e6

VQSLOD
type: SiteQuality
SIO_000300: 6.704000000000001e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

QD
type: SiteQuality
SIO_000300: 2.223e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2407
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47988
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 2.963255630185698e-4
allele num: 10124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.309e-1

FS
type: SiteQuality
SIO_000300: 2.022e0

MQRankSum
type: SiteQuality
SIO_000300: 3.88e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.583e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 1.765885e6

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

QD
type: SiteQuality
SIO_000300: 2.168e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.178e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 2404
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.16770859381512e-5
allele num: 47988
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.932e1

MQRankSum
type: SiteQuality
SIO_000300: 8.44e-1

FS
type: SiteQuality
SIO_000300: 2.535e0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.262e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.315e0

DP
type: SiteQuality
SIO_000300: 1.765501e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.024e1

QD
type: SiteQuality
SIO_000300: 2.276e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.868e0

DP
type: SiteQuality
SIO_000300: 1.76496e6

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.907e-1

FS
type: SiteQuality
SIO_000300: 3.458e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3091
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47989
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.878494517435543e-5
allele num: 10123
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.764262e6

QD
type: SiteQuality
SIO_000300: 3.402e1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.594e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 692
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083810873325137e-5
allele num: 47989
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.764256e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.725e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.893e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 9.94e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.167621746650274e-5
allele num: 47989
num of homozygotes: 0

BaseQRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47989
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4529
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Latino
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allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 633
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East Asian
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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DP
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 633
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European (Non-Finnish)
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allele count: 4
allele frequency: 8.335243493300547e-5
allele num: 47989
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
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allele num: 47991
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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Other
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South Asian
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10122
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African
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allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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MQ
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VQSLOD
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.08385429690756e-5
allele num: 47988
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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VQSLOD
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 47985
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European (Finnish)
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allele count: 1
allele frequency: 2.20799293442261e-4
allele num: 4529
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Other
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allele num: 633
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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QD
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MQ
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 8.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

African
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allele num: 8516
num of homozygotes: 0

South Asian
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Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.332e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 6.251953735542357e-5
allele num: 47985
num of homozygotes: 0

Latino
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South Asian
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allele frequency: 0.0e0
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African
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DP
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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ClippingRankSum
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MQ
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QD
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47979
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South Asian
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allele num: 10120
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Other
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BaseQRankSum
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QD
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InbreedingCoeff
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FS
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DP
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele num: 4529
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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South Asian
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African
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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DP
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FS
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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African
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Latino
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South Asian
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FS
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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MQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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European (Finnish)
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Other
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BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.1e0

MQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.588e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.74e-1

QD
type: SiteQuality
SIO_000300: 1.454e1

FS
type: SiteQuality
SIO_000300: 1.805e0

DP
type: SiteQuality
SIO_000300: 1.759873e6

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10113
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073652566029633e-4
allele num: 9314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.986e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 1.757863e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.1e1

FS
type: SiteQuality
SIO_000300: 6.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10113
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.52147701582517e-4
allele num: 6635
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 6.04e-1

DP
type: SiteQuality
SIO_000300: 1.757863e6

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.986e0

QD
type: SiteQuality
SIO_000300: 1.1e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 3241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086811352253756e-5
allele num: 47920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10113
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 2.025e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 2.815e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: -2.006e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.465e0

MQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

DP
type: SiteQuality
SIO_000300: 1.757236e6

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.221995489206315e-4
allele num: 9311
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10105
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8491
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47897
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

FS
type: SiteQuality
SIO_000300: 9.78e-1

QD
type: SiteQuality
SIO_000300: 1.785e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.918e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.23e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

DP
type: SiteQuality
SIO_000300: 1.754176e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.58e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4513
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 6.927263730826323e-4
allele num: 10105
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47887
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.625e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

DP
type: SiteQuality
SIO_000300: 1.753716e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.014e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10089
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47789
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.509206157561123e-4
allele num: 6626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.01e-1

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-1

BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.51e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096172389217289e-5
allele num: 47706
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
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allele num: 10077
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47679
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.53035336756267e-4
allele num: 6622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.163e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.741936e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2317
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variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8399
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9267
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.216118219954888e-5
allele num: 47437
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10055
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

DP
type: SiteQuality
SIO_000300: 1.724979e6

QD
type: SiteQuality
SIO_000300: 1.872e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 5.55e0

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 502
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35542
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8325
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6579
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.128202945432876e-5
allele num: 46988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9235
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9993
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.685938e6

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.468e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.316e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 5.872e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

GenotypeQuality
all individuals: 34988
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.002004008016032e-4
allele num: 9980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46917
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

DP
type: SiteQuality
SIO_000300: 1.678489e6

QD
type: SiteQuality
SIO_000300: 3.27e1

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 426
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 598
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2756
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46843
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9969
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9221
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.826762064241133e-3
allele num: 6569
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4349
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

DP
type: SiteQuality
SIO_000300: 1.670326e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.339e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.86e-2

QD
type: SiteQuality
SIO_000300: 1.621e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
all individuals: 163
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2928
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34743
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4329
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.806866091146356e-3
allele num: 9962
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8277
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9213
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46757
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

QD
type: SiteQuality
SIO_000300: 2.377e1

VQSLOD
type: SiteQuality
SIO_000300: -7.86e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.66568e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.038e-1

GenotypeQuality
all individuals: 330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 468
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8775
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.011443485243927e-4
allele num: 9962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4329
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8277
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46757
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9213
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.66568e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.038e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.86e-2

FS
type: SiteQuality
SIO_000300: 5.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

QD
type: SiteQuality
SIO_000300: 2.377e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 456
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GenotypeQuality
all individuals: 625
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variant carriers: 1

GenotypeQuality
all individuals: 1465
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2241
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35222
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variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.138900177528715e-5
allele num: 46753
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8281
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6559
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.08542277216976e-4
allele num: 9213
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.643e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

DP
type: SiteQuality
SIO_000300: 1.663322e6

QD
type: SiteQuality
SIO_000300: 2.076e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
all individuals: 640
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 2628
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variant carriers: 0

GenotypeQuality
all individuals: 488
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variant carriers: 0

GenotypeQuality
all individuals: 575
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 1435
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GenotypeQuality
all individuals: 580
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GenotypeQuality
all individuals: 713
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GenotypeQuality
all individuals: 613
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GenotypeQuality
all individuals: 2229
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variant carriers: 1

GenotypeQuality
all individuals: 34189
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9185
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6551
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.149797918995614e-5
allele num: 46516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8218
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.296e1

FS
type: SiteQuality
SIO_000300: 1.512e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: 2.45e-1

DP
type: SiteQuality
SIO_000300: 1.643203e6

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
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GenotypeQuality
all individuals: 125
bin: 1.75e1
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GenotypeQuality
all individuals: 3655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 34090
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 590
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GenotypeQuality
all individuals: 2752
bin: 7.25e1
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GenotypeQuality
all individuals: 613
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 4.371584699453552e-4
allele num: 9150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.162021922902298e-5
allele num: 46253
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4244
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.573844833925726e-3
allele num: 8159
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.65e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.08e-1

FS
type: SiteQuality
SIO_000300: 2.417e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.162e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.628608e6

QD
type: SiteQuality
SIO_000300: 1.623e1

GenotypeQuality
all individuals: 301
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
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GenotypeQuality
all individuals: 796
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 598
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
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GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 236
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GenotypeQuality
all individuals: 3860
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34782
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.164549016212472e-5
allele num: 46199
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.175e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 1.622866e6

QD
type: SiteQuality
SIO_000300: 1.355e1

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2652
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34517
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6501
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9879
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.173298850324908e-5
allele num: 46013
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.009e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.614941e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

QD
type: SiteQuality
SIO_000300: 1.566e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 526
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5770
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2171
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2322
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6427
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7995
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4025
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.107665042091272e-4
allele num: 9028
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.174e0

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-2

FS
type: SiteQuality
SIO_000300: 2.507e0

DP
type: SiteQuality
SIO_000300: 1.565904e6

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

QD
type: SiteQuality
SIO_000300: 1.364e1

GenotypeQuality
all individuals: 1149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7367
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2276
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2498
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.208236722976703e-5
allele num: 45285
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9009
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9767
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7979
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6415
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.561374e6

QD
type: SiteQuality
SIO_000300: 3.008e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.069e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: -4.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.815e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 316
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31948
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4003
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.209993591018586e-5
allele num: 45249
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9761
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.845e1

DP
type: SiteQuality
SIO_000300: 1.555672e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.708e1

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

GenotypeQuality
all individuals: 6438
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2144
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7179
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 822
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.218918499123527e-5
allele num: 45067
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6387
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.543204e6

VQSLOD
type: SiteQuality
SIO_000300: -9.512e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

QD
type: SiteQuality
SIO_000300: 1.686e1

FS
type: SiteQuality
SIO_000300: 1.0104e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
all individuals: 1393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2220
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 152
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
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variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6756
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2295
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6329
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3818
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.269680040629761e-4
allele num: 7876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8881
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 4.504e0

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.998e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

QD
type: SiteQuality
SIO_000300: 1.568e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.500581e6

GenotypeQuality
all individuals: 6756
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 513
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2295
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 682
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1393
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 597
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 152
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 595
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 799
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 900
bin: 3.75e1
variant carriers: 7

GenotypeQuality
all individuals: 434
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 29812
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1446
bin: 2.75e1
variant carriers: 4

South Asian
type: Population
allele count: 1
allele frequency: 1.038421599169263e-4
allele num: 9630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6329
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3818
num of homozygotes: 0

African
type: Population
allele count: 251
allele frequency: 3.186896901980701e-2
allele num: 7876
num of homozygotes: 3

Latino
type: Population
allele count: 13
allele frequency: 1.463799121720527e-3
allele num: 8881
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.496402877697842e-5
allele num: 44480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.568e1

FS
type: SiteQuality
SIO_000300: 4.504e0

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.998e-1

DP
type: SiteQuality
SIO_000300: 1.500581e6

GenotypeQuality
all individuals: 446
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1085
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26141
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.057865227969957e-4
allele num: 9453
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8687
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7719
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 557
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.965e1

DP
type: SiteQuality
SIO_000300: 1.413357e6

VQSLOD
type: SiteQuality
SIO_000300: -1.077e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 140
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25747
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11630
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 669
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3487
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 549
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.622887918082426e-5
allele num: 43263
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6203
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.403566e6

FS
type: SiteQuality
SIO_000300: 5.598e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.531e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1024
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3341
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6121
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 539
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42661
num of homozygotes: 0

South Asian
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allele frequency: 1.074460083807887e-4
allele num: 9307
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.901e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.0196e1

DP
type: SiteQuality
SIO_000300: 1.348497e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.121e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 8417
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42055
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.332800213248034e-4
allele num: 7503
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3244
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.257e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.308383e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 5.881e1

QD
type: SiteQuality
SIO_000300: 1.469e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6031
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3155
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41675
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7423
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9193
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

QD
type: SiteQuality
SIO_000300: 1.894e1

FS
type: SiteQuality
SIO_000300: 2.473e0

VQSLOD
type: SiteQuality
SIO_000300: -6.571e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

DP
type: SiteQuality
SIO_000300: 1.289251e6

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.360174102285093e-4
allele num: 7352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 517
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.861e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.091e0

QD
type: SiteQuality
SIO_000300: 1.16e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.26207e6

MQRankSum
type: SiteQuality
SIO_000300: -1.725e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.202501202501203e-4
allele num: 8316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7355
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9161
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3097
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 517
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.086e1

FS
type: SiteQuality
SIO_000300: 2.077e0

VQSLOD
type: SiteQuality
SIO_000300: 3.41e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

DP
type: SiteQuality
SIO_000300: 1.261099e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8239
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.849814762040468e-4
allele num: 7018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.484780718101628e-5
allele num: 40245
num of homozygotes: 0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.279e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -6.011e1

QD
type: SiteQuality
SIO_000300: 3.1e-1

MQ
type: SiteQuality
SIO_000300: 5.726e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.185e0

DP
type: SiteQuality
SIO_000300: 1.224847e6

GenotypeQuality
all individuals: 920
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 501
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2931
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.476350849388341e-5
allele num: 40382
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9029
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 4.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.186e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

DP
type: SiteQuality
SIO_000300: 1.198211e6

MQ
type: SiteQuality
SIO_000300: 5.652e1

FS
type: SiteQuality
SIO_000300: 3.424e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1408
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5891
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2858
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.2306177701206e-4
allele num: 8126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39997
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.183862e6

MQRankSum
type: SiteQuality
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