X-11778971-AAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011778971
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011778968
    reference: chr 0
allele count: 1
allele frequency: 2.247898215168817e-5
allele num: 44486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.177_179delAAG
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-195_-193delAAG
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-195_-193delAAG
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.304_306delAAG
  hgvsp: ENSP00000312244.4:p.Lys102del
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.268_270delAAG
  hgvsp: ENSP00000381538.2:p.Lys90del
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.304_306delAAG
  hgvsp: ENSP00000418673.1:p.Lys102del
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.-61_-59delAAG
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.291_293delAAG
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.207_209delAAG
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-195_-193delAAG
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.354_356delAAG
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.304_306delAAG
  hgvsp: ENSP00000338078.2:p.Lys102del
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.479_481delAAG
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.268_270delAAG
  hgvsp: ENSP00000401809.2:p.Lys90del
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys102del
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: AAAG
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

X-11778978-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011778978
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011778978
    reference: chr 0
allele count: 1
allele frequency: 2.150907683042244e-5
allele num: 46492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.268A>C
  hgvsp: ENSP00000381538.2:p.Lys90Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.479A>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-195A>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.304A>C
  hgvsp: ENSP00000338078.2:p.Lys102Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.-61A>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.304A>C
  hgvsp: ENSP00000312244.4:p.Lys102Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-195A>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.207A>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.177A>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.304A>C
  hgvsp: ENSP00000418673.1:p.Lys102Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-195A>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.354A>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.268A>C
  hgvsp: ENSP00000401809.2:p.Lys90Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.291A>C
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys102Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

X-11778981-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011778981
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011778981
    reference: chr 0
allele count: 2
allele frequency: 4.237108597093343e-5
allele num: 47202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.-58C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.210C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-192C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.294C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.307C>T
  hgvsp: ENSP00000418673.1:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.271C>T
  hgvsp: ENSP00000401809.2:p.Arg91Cys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.307C>T
  hgvsp: ENSP00000338078.2:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.307C>T
  hgvsp: ENSP00000312244.4:p.Arg103Cys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.180C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-192C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.271C>T
  hgvsp: ENSP00000381538.2:p.Arg91Cys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.482C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.357C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-192C>T
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg103Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-11778982-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011778982
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011778982
    reference: chr 0
allele count: 2
allele frequency: 4.213897433736463e-5
allele num: 47462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.308G>A
  hgvsp: ENSP00000418673.1:p.Arg103His
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-191G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.-57G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.295G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.308G>A
  hgvsp: ENSP00000338078.2:p.Arg103His
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.272G>A
  hgvsp: ENSP00000381538.2:p.Arg91His
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.272G>A
  hgvsp: ENSP00000401809.2:p.Arg91His
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.211G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-191G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-191G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.308G>A
  hgvsp: ENSP00000312244.4:p.Arg103His
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.483G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.181G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.358G>A
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17555
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg103His
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

X-11778985-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011778985
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011778985
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 48356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.361G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.311G>T
  hgvsp: ENSP00000312244.4:p.Cys104Phe
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.311G>T
  hgvsp: ENSP00000338078.2:p.Cys104Phe
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.486G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.311G>T
  hgvsp: ENSP00000418673.1:p.Cys104Phe
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.298G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-188G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-188G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-188G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.275G>T
  hgvsp: ENSP00000401809.2:p.Cys92Phe
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.-54G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.275G>T
  hgvsp: ENSP00000381538.2:p.Cys92Phe
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.214G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.184G>T
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26303
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys104Phe
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-11779018-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779018
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779018
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 48977
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.344G>T
  hgvsp: ENSP00000312244.4:p.Gly115Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-155G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.331G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-155G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-155G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.-21G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.308G>T
  hgvsp: ENSP00000381538.2:p.Gly103Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.308G>T
  hgvsp: ENSP00000401809.2:p.Gly103Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.344G>T
  hgvsp: ENSP00000418673.1:p.Gly115Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.344G>T
  hgvsp: ENSP00000338078.2:p.Gly115Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.247G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.519G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.394G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.217G>T
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24779
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly115Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD

X-11779021-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779021
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779021
    reference: chr 0
allele count: 1
allele frequency: 2.074559674709043e-5
allele num: 48203
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-152T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.311T>C
  hgvsp: ENSP00000381538.2:p.Leu104Pro
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.311T>C
  hgvsp: ENSP00000401809.2:p.Leu104Pro
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.347T>C
  hgvsp: ENSP00000338078.2:p.Leu116Pro
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.347T>C
  hgvsp: ENSP00000312244.4:p.Leu116Pro
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.347T>C
  hgvsp: ENSP00000418673.1:p.Leu116Pro
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.397T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.250T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-152T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.522T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-152T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.220T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.334T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.-18T>C
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu116Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

X-11779022-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779022
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779022
    reference: chr 0
allele count: 1
allele frequency: 2.084810073802277e-5
allele num: 47966
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.312C>T
  hgvsp: ENST00000398527.2:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.398C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.221C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.-17C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.348C>T
  hgvsp: ENST00000468149.1:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-151C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-151C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.348C>T
  hgvsp: ENST00000337339.2:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.335C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.312C>T
  hgvsp: ENST00000421368.2:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.523C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.348C>T
  hgvsp: ENST00000312196.4:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.251C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-151C>T
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu116Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

X-11779032-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779032
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779032
    reference: chr 0
allele count: 2
allele frequency: 4.447607187333215e-5
allele num: 44968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.533G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.261G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-141G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-141G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.322G>A
  hgvsp: ENSP00000381538.2:p.Glu108Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.358G>A
  hgvsp: ENSP00000418673.1:p.Glu120Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.322G>A
  hgvsp: ENSP00000401809.2:p.Glu108Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.345G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.231G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.358G>A
  hgvsp: ENSP00000338078.2:p.Glu120Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-141G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.358G>A
  hgvsp: ENSP00000312244.4:p.Glu120Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.-7G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.408G>A
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10805
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu120Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-11779040-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779040
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779040
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 42406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-133T>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-133T>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.366T>A
  hgvsp: ENSP00000312244.4:p.Asp122Glu
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-133T>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.2T>A
  hgvsp: ENSP00000354562.2:p.Met1?
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.269T>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.366T>A
  hgvsp: ENSP00000338078.2:p.Asp122Glu
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.330T>A
  hgvsp: ENSP00000381538.2:p.Asp110Glu
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.239T>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.330T>A
  hgvsp: ENSP00000401809.2:p.Asp110Glu
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.366T>A
  hgvsp: ENSP00000418673.1:p.Asp122Glu
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.353T>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.416T>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.541T>A
  variant of: http://identifiers.org/hgnc/7370
canonical: false
consequence: start lost
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23077
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD

X-11779084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779084
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779084
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 26162
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.382+28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-117+28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.369+28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.382+28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-117+28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.18+28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.460G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.346+28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.346+28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.382+28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.557+28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.285+28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.255+28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-117+28G>A
  variant of: http://identifiers.org/hgnc/7370
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24267
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

X-11779091-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779091
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779091
    reference: chr 0
allele count: 1
allele frequency: 4.135820339964432e-5
allele num: 24179
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.346+35G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-117+35G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.557+35G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-117+35G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.255+35G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.382+35G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.346+35G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.382+35G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.369+35G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.382+35G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.467G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-117+35G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.18+35G>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.285+35G>C
  variant of: http://identifiers.org/hgnc/7370
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

X-11779108-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779108
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779108
    reference: chr 0
allele count: 1
allele frequency: 4.871632484045403e-5
allele num: 20527
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.346+52G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000478462
  gene symbol: MSL3
  hgvsc: ENST00000478462.1:n.484G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.369+52G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.557+52G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.346+52G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-117+52G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.255+52G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.382+52G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.382+52G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-117+52G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.18+52G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-117+52G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.382+52G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.285+52G>A
  variant of: http://identifiers.org/hgnc/7370
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18290
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25256
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum

X-11779569-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779569
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779569
    reference: chr 0
allele count: 1
allele frequency: 1.175461074606514e-5
allele num: 85073
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-116-50G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-116-50G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.347-50G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.286-50G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.558-50G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.256-50G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.347-50G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.383-50G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.382+513G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.383-50G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.370-50G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.18+513G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-116-50G>A
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15910
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

X-11779573-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779573
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779573
    reference: chr 0
allele count: 1
allele frequency: 1.175240042778738e-5
allele num: 85089
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.558-46G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.370-46G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-116-46G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.347-46G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-116-46G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.347-46G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.256-46G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.383-46G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-116-46G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.383-46G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.286-46G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.382+517G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.18+517G>A
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-11779588-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779588
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779588
    reference: chr 0
allele count: 1
allele frequency: 1.174646431424141e-5
allele num: 85132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.382+532C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.558-31C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.347-31C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.256-31C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.286-31C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.383-31C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.18+532C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.383-31C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.370-31C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.347-31C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-116-31C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-116-31C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-116-31C>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-11779588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779588
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779588
    reference: chr 0
allele count: 11
allele frequency: 1.292111074566556e-4
allele num: 85132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.256-31C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.383-31C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.286-31C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.370-31C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.383-31C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-116-31C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.382+532C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.558-31C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-116-31C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.347-31C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.18+532C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.347-31C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-116-31C>T
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

X-11779597-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779597
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779597
    reference: chr 0
allele count: 3
allele frequency: 3.514650233724241e-5
allele num: 85357
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-116-22C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-116-22C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.383-22C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.370-22C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.256-22C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.558-22C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.382+541C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.18+541C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.347-22C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-116-22C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.286-22C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.383-22C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.347-22C>T
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

X-11779598-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779598
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779598
    reference: chr 0
allele count: 1
allele frequency: 1.170138076293003e-5
allele num: 85460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.18+542G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.286-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.383-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.347-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.256-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.382+542G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-116-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.383-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.347-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-116-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.370-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.558-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-116-21G>A
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

X-11779620-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779620
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779620
    reference: chr 0
allele count: 4
allele frequency: 4.628611763616797e-5
allele num: 86419
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.257A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-115A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.348A>G
  hgvsp: ENST00000421368.2:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.287A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.18+564A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-115A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-115A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.384A>G
  hgvsp: ENST00000312196.4:c.384A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.384A>G
  hgvsp: ENST00000337339.2:c.384A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.348A>G
  hgvsp: ENST00000398527.2:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.382+564A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.371A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.559A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.384A>G
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

X-11779632-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779632
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779632
    reference: chr 0
allele count: 946
allele frequency: 1.088044165851975e-2
allele num: 86945
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.360C>T
  hgvsp: ENST00000398527.2:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.396C>T
  hgvsp: ENST00000312196.4:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-103C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.383C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.269C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-103C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.396C>T
  hgvsp: ENST00000337339.2:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.360C>T
  hgvsp: ENST00000421368.2:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-103C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.571C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.299C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.382+576C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.18+576C>T
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 15949
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24799
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8808
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 9.75e1
  variant carriers: 670
genotype quality: GenotypeQuality
hgvs: p.Ser132Ser
num of homozygotes: 38
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

X-11779637-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779637
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779637
    reference: chr 0
allele count: 104
allele frequency: 1.194345234677354e-3
allele num: 87077
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.304A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.365A>G
  hgvsp: ENSP00000401809.2:p.Asp122Gly
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.382+581A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.365A>G
  hgvsp: ENSP00000381538.2:p.Asp122Gly
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-98A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-98A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.274A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-98A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.576A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.401A>G
  hgvsp: ENSP00000312244.4:p.Asp134Gly
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.401A>G
  hgvsp: ENSP00000338078.2:p.Asp134Gly
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.388A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.18+581A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 9020
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25159
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 16198
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Asp134Gly
num of homozygotes: 2
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-11779668-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779668
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779668
    reference: chr 0
allele count: 1
allele frequency: 1.148778274305276e-5
allele num: 87049
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-581T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.432T>G
  hgvsp: ENSP00000312244.4:p.Ser144Arg
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.419T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.607T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-581T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.305T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.396T>G
  hgvsp: ENSP00000381538.2:p.Ser132Arg
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-67T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-67T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.335T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.396T>G
  hgvsp: ENSP00000401809.2:p.Ser132Arg
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.432T>G
  hgvsp: ENSP00000338078.2:p.Ser144Arg
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-67T>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser144Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

X-11779682-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779682
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779682
    reference: chr 0
allele count: 1
allele frequency: 1.153096641029485e-5
allele num: 86723
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.349T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.446T>C
  hgvsp: ENSP00000338078.2:p.Ile149Thr
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-567T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.446T>C
  hgvsp: ENSP00000312244.4:p.Ile149Thr
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.410T>C
  hgvsp: ENSP00000401809.2:p.Ile137Thr
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-53T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.410T>C
  hgvsp: ENSP00000381538.2:p.Ile137Thr
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.319T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-53T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-567T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.433T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.621T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-53T>C
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile149Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-11779686-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779686
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779686
    reference: chr 0
allele count: 1
allele frequency: 1.155975816985909e-5
allele num: 86507
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-49A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-563A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-49A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.450A>G
  hgvsp: ENST00000312196.4:c.450A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.353A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.625A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.414A>G
  hgvsp: ENST00000421368.2:c.414A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.414A>G
  hgvsp: ENST00000398527.2:c.414A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.450A>G
  hgvsp: ENST00000337339.2:c.450A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000473806
  gene symbol: MSL3
  hgvsc: ENST00000473806.1:n.437A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-49A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.323A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-563A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16066
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu150Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

X-11779707-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779707
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779707
    reference: chr 0
allele count: 4
allele frequency: 4.807634523623514e-5
allele num: 83201
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-34+6A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.465+6A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-34+6A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.338+6A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.429+6A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.368+6A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.429+6A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.640+6A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-34+6A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-542A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.465+6A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-542A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.465+6A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

X-11779715-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779715
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779715
    reference: chr 0
allele count: 3
allele frequency: 3.699638668623365e-5
allele num: 81089
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-34+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-34+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-534A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.429+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.429+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.338+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.465+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-34+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.465+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-534A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.640+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.368+14A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19109
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-11779719-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779719
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779719
    reference: chr 0
allele count: 1
allele frequency: 1.252881627743811e-5
allele num: 79816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-530T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.429+18T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-530T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-34+18T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.640+18T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.338+18T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-34+18T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.465+18T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-34+18T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.465+18T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.429+18T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.368+18T>C
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-11779720-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779720
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779720
    reference: chr 0
allele count: 1
allele frequency: 1.257007818588632e-5
allele num: 79554
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-529A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.465+19A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.338+19A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.429+19A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.368+19A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.465+19A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.429+19A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-34+19A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-529A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.640+19A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-34+19A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-34+19A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-11779725-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779725
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779725
    reference: chr 0
allele count: 2
allele frequency: 2.561016211232617e-5
allele num: 78094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.338+24C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.429+24C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.429+24C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-34+24C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.465+24C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-524C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-524C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-34+24C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.640+24C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.465+24C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-34+24C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.368+24C>A
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8372
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

X-11779740-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011779740
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011779740
    reference: chr 0
allele count: 2
allele frequency: 2.734145374509563e-5
allele num: 73149
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-34+39A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-34+39A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.338+39A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.429+39A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.465+39A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.429+39A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.640+39A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-509A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-509A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.465+39A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-34+39A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.368+39A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-11780205-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780205
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780205
    reference: chr 0
allele count: 1
allele frequency: 1.231057108739274e-5
allele num: 81231
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-33-44T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-44T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-33-44T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.369-44T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.641-44T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.430-44T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.466-44T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.339-44T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.430-44T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.466-44T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-44T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-33-44T>C
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

X-11780215-TTAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780215
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780211
    reference: chr 0
allele count: 1
allele frequency: 1.22955858846674e-5
allele num: 81330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.339-31_339-28delAATA
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.430-31_430-28delAATA
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.369-31_369-28delAATA
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-33-31_-33-28delAATA
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-33-31_-33-28delAATA
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-33-31_-33-28delAATA
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.430-31_430-28delAATA
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.466-31_466-28delAATA
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.466-31_466-28delAATA
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-31_383-28delAATA
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.641-31_641-28delAATA
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-31_19-28delAATA
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7084
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: TTAAA
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-11780217-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780217
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780217
    reference: chr 0
allele count: 2
allele frequency: 2.458210422812193e-5
allele num: 81360
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.466-32A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-33-32A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.430-32A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-33-32A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.430-32A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.339-32A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.466-32A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.369-32A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-32A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.641-32A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-33-32A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-32A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-11780227-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780227
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780227
    reference: chr 0
allele count: 1
allele frequency: 1.223810456236538e-5
allele num: 81712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-33-22A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.339-22A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-33-22A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-22A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.430-22A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.466-22A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.369-22A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.466-22A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-22A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-33-22A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.641-22A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.430-22A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6832
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-11780239-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780239
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780239
    reference: chr 0
allele count: 1
allele frequency: 1.212224067496636e-5
allele num: 82493
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-33-10G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-10G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.641-10G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-33-10G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.430-10G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-10G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.339-10G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.430-10G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-33-10G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.369-10G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.466-10G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.466-10G>A
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

X-11780243-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780243
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780243
    reference: chr 0
allele count: 1
allele frequency: 1.205908953873983e-5
allele num: 82925
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-33-6T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.466-6T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.430-6T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-33-6T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.339-6T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-33-6T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.383-6T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.430-6T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.19-6T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.369-6T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.466-6T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.641-6T>C
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.466-6T>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS

X-11780261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780261
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780261
    reference: chr 0
allele count: 1
allele frequency: 1.17978787414023e-5
allele num: 84761
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.653G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.351G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.478G>A
  hgvsp: ENSP00000312244.4:p.Glu160Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-21G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.478G>A
  hgvsp: ENSP00000338078.2:p.Glu160Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.31G>A
  hgvsp: ENSP00000354562.2:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.442G>A
  hgvsp: ENSP00000401809.2:p.Glu148Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.442G>A
  hgvsp: ENSP00000381538.2:p.Glu148Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.381G>A
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu160Lys
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

X-11780278-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780278
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780278
    reference: chr 0
allele count: 1
allele frequency: 1.162560889126568e-5
allele num: 86017
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.495G>A
  hgvsp: ENST00000337339.2:c.495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.459G>A
  hgvsp: ENST00000398527.2:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.495G>A
  hgvsp: ENST00000312196.4:c.495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.368G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.48G>A
  hgvsp: ENST00000361672.2:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.-4G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.-4G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.398G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.670G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.459G>A
  hgvsp: ENST00000421368.2:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg165Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

X-11780294-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780294
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780294
    reference: chr 0
allele count: 1
allele frequency: 1.153336024450724e-5
allele num: 86705
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.64A>G
  hgvsp: ENSP00000354562.2:p.Thr22Ala
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.475A>G
  hgvsp: ENSP00000401809.2:p.Thr159Ala
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.13A>G
  hgvsp: ENSP00000370068.2:p.Thr5Ala
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.475A>G
  hgvsp: ENSP00000381538.2:p.Thr159Ala
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.384A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.511A>G
  hgvsp: ENSP00000312244.4:p.Thr171Ala
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.13A>G
  hgvsp: ENSP00000419976.1:p.Thr5Ala
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.414A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*44A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.13A>G
  hgvsp: ENSP00000370069.3:p.Thr5Ala
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.511A>G
  hgvsp: ENSP00000338078.2:p.Thr171Ala
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.686A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr171Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

X-11780295-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780295
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780295
    reference: chr 0
allele count: 1
allele frequency: 1.15300357431108e-5
allele num: 86730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.65C>G
  hgvsp: ENSP00000354562.2:p.Thr22Arg
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.476C>G
  hgvsp: ENSP00000401809.2:p.Thr159Arg
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*45C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.512C>G
  hgvsp: ENSP00000312244.4:p.Thr171Arg
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.14C>G
  hgvsp: ENSP00000370069.3:p.Thr5Arg
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.14C>G
  hgvsp: ENSP00000419976.1:p.Thr5Arg
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.385C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.14C>G
  hgvsp: ENSP00000370068.2:p.Thr5Arg
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.476C>G
  hgvsp: ENSP00000381538.2:p.Thr159Arg
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.415C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.687C>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.512C>G
  hgvsp: ENSP00000338078.2:p.Thr171Arg
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr171Arg
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

X-11780297-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780297
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780297
    reference: chr 0
allele count: 4
allele frequency: 4.608294930875576e-5
allele num: 86800
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.689A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.478A>G
  hgvsp: ENSP00000381538.2:p.Ile160Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.16A>G
  hgvsp: ENSP00000419976.1:p.Ile6Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.16A>G
  hgvsp: ENSP00000370069.3:p.Ile6Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.16A>G
  hgvsp: ENSP00000370068.2:p.Ile6Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.478A>G
  hgvsp: ENSP00000401809.2:p.Ile160Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*47A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.514A>G
  hgvsp: ENSP00000338078.2:p.Ile172Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.514A>G
  hgvsp: ENSP00000312244.4:p.Ile172Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.67A>G
  hgvsp: ENSP00000354562.2:p.Ile23Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.417A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.387A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile172Val
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-11780303-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780303
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780303
    reference: chr 0
allele count: 19
allele frequency: 2.184209316227526e-4
allele num: 86988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.695A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.423A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.520A>G
  hgvsp: ENSP00000312244.4:p.Ile174Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.73A>G
  hgvsp: ENSP00000354562.2:p.Ile25Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.484A>G
  hgvsp: ENSP00000401809.2:p.Ile162Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.393A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.22A>G
  hgvsp: ENSP00000370068.2:p.Ile8Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.22A>G
  hgvsp: ENSP00000419976.1:p.Ile8Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.22A>G
  hgvsp: ENSP00000370069.3:p.Ile8Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.484A>G
  hgvsp: ENSP00000381538.2:p.Ile162Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.520A>G
  hgvsp: ENSP00000338078.2:p.Ile174Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*53A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7909
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile174Val
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

X-11780317-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780317
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780317
    reference: chr 0
allele count: 1
allele frequency: 1.145750982481467e-5
allele num: 87279
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*67A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.36A>G
  hgvsp: ENST00000380692.2:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.709A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.498A>G
  hgvsp: ENST00000398527.2:c.498A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.36A>G
  hgvsp: ENST00000380693.3:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.498A>G
  hgvsp: ENST00000421368.2:c.498A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.437A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.87A>G
  hgvsp: ENST00000361672.2:c.87A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.36A>G
  hgvsp: ENST00000476743.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.534A>G
  hgvsp: ENST00000337339.2:c.534A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.407A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.534A>G
  hgvsp: ENST00000312196.4:c.534A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu178Glu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ

X-11780327-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780327
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780327
    reference: chr 0
allele count: 1
allele frequency: 1.14386374295094e-5
allele num: 87423
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.97A>C
  hgvsp: ENSP00000354562.2:p.Lys33Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.417A>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.508A>C
  hgvsp: ENSP00000381538.2:p.Lys170Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000419976
  ensembl transcript: ENST00000476743
  gene symbol: MSL3
  hgvsc: ENST00000476743.1:c.46A>C
  hgvsp: ENSP00000419976.1:p.Lys16Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.719A>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.447A>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.46A>C
  hgvsp: ENSP00000370069.3:p.Lys16Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.508A>C
  hgvsp: ENSP00000401809.2:p.Lys170Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.544A>C
  hgvsp: ENSP00000338078.2:p.Lys182Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.46A>C
  hgvsp: ENSP00000370068.2:p.Lys16Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*77A>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.544A>C
  hgvsp: ENSP00000312244.4:p.Lys182Gln
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys182Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ

X-11780340-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780340
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780340
    reference: chr 0
allele count: 1
allele frequency: 1.142674314966748e-5
allele num: 87514
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.557A>G
  hgvsp: ENSP00000312244.4:p.Asp186Gly
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.732A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.59A>G
  hgvsp: ENSP00000370068.2:p.Asp20Gly
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.430A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*90A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.521A>G
  hgvsp: ENSP00000401809.2:p.Asp174Gly
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.110A>G
  hgvsp: ENSP00000354562.2:p.Asp37Gly
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.521A>G
  hgvsp: ENSP00000381538.2:p.Asp174Gly
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.59A>G
  hgvsp: ENSP00000370069.3:p.Asp20Gly
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.460A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.557A>G
  hgvsp: ENSP00000338078.2:p.Asp186Gly
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp186Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-11780351-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780351
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780351
    reference: chr 0
allele count: 2
allele frequency: 2.284774264302687e-5
allele num: 87536
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.568T>C
  hgvsp: ENSP00000338078.2:p.Tyr190His
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.441T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.532T>C
  hgvsp: ENSP00000401809.2:p.Tyr178His
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.568T>C
  hgvsp: ENSP00000312244.4:p.Tyr190His
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.121T>C
  hgvsp: ENSP00000354562.2:p.Tyr41His
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*101T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.70T>C
  hgvsp: ENSP00000370069.3:p.Tyr24His
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.471T>C
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.532T>C
  hgvsp: ENSP00000381538.2:p.Tyr178His
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.70T>C
  hgvsp: ENSP00000370068.2:p.Tyr24His
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.743T>C
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr190His
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

X-11780354-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780354
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780354
    reference: chr 0
allele count: 1
allele frequency: 1.142334932602239e-5
allele num: 87540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.474A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*104A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.571A>G
  hgvsp: ENSP00000312244.4:p.Ile191Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.73A>G
  hgvsp: ENSP00000370068.2:p.Ile25Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.535A>G
  hgvsp: ENSP00000381538.2:p.Ile179Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.73A>G
  hgvsp: ENSP00000370069.3:p.Ile25Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.444A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.535A>G
  hgvsp: ENSP00000401809.2:p.Ile179Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.746A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.124A>G
  hgvsp: ENSP00000354562.2:p.Ile42Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.571A>G
  hgvsp: ENSP00000338078.2:p.Ile191Val
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile191Val
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

X-11780365-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780365
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780365
    reference: chr 0
allele count: 1
allele frequency: 1.142961642207288e-5
allele num: 87492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.757G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.84G>A
  hgvsp: ENST00000380693.3:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.582G>A
  hgvsp: ENST00000337339.2:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.582G>A
  hgvsp: ENST00000312196.4:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.546G>A
  hgvsp: ENST00000421368.2:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.546G>A
  hgvsp: ENST00000398527.2:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.135G>A
  hgvsp: ENST00000361672.2:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.455G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.485G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.84G>A
  hgvsp: ENST00000380692.2:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*115G>A
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg194Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-11780374-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780374
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780374
    reference: chr 0
allele count: 9
allele frequency: 1.029053613693273e-4
allele num: 87459
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.552+3A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.141+3A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.461+3A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.90+3A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.588+3A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*121+3A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.763+3A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.588+3A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.90+3A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.491+3A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.552+3A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.588+3A>G
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

X-11780378-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780378
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780378
    reference: chr 0
allele count: 1
allele frequency: 1.14370675358838e-5
allele num: 87435
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.763+7A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.552+7A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.90+7A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.588+7A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.141+7A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.461+7A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*121+7A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.552+7A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.491+7A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.90+7A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.588+7A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.588+7A>G
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-11780385-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780385
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780385
    reference: chr 0
allele count: 1
allele frequency: 1.14417785100516e-5
allele num: 87399
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.90+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.491+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.141+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.552+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.461+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.588+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*121+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.763+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.552+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.90+14A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.588+14A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

X-11780391-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780391
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780391
    reference: chr 0
allele count: 1
allele frequency: 1.144492131616595e-5
allele num: 87375
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.588+20A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.461+20A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.588+20A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.552+20A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.552+20A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.141+20A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.90+20A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.90+20A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.491+20A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*121+20A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.763+20A>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

X-11780406-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780406
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780406
    reference: chr 0
allele count: 1
allele frequency: 1.145357294207928e-5
allele num: 87309
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.552+35T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.90+35T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.588+35T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.141+35T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.491+35T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.763+35T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*121+35T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.461+35T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.90+35T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.552+35T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.588+35T>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

X-11780418-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780418
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780418
    reference: chr 0
allele count: 1
allele frequency: 1.147052076164258e-5
allele num: 87180
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.588+47T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.588+47T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.763+47T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.491+47T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*121+47T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.90+47T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.461+47T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.90+47T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.552+47T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.552+47T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.141+47T>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

X-11780920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780920
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780920
    reference: chr 0
allele count: 1
allele frequency: 1.218486882988705e-5
allele num: 82069
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.462-36G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.553-36G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.91-36G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.553-36G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.142-36G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.764-36G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.589-36G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.492-36G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.589-36G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.91-36G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*122-36G>A
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS

X-11780926-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780926
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780926
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 82343
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.764-30T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.589-30T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.91-30T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.553-30T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.91-30T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.553-30T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.462-30T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*122-30T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.492-30T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.589-30T>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.142-30T>G
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-11780928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780928
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780928
    reference: chr 0
allele count: 1
allele frequency: 1.21410793419535e-5
allele num: 82365
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.553-28C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.764-28C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*122-28C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.589-28C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.462-28C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.91-28C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.589-28C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.142-28C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.553-28C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.91-28C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.492-28C>T
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-11780938-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780938
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780938
    reference: chr 0
allele count: 1
allele frequency: 1.2047321880346e-5
allele num: 83006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.142-18C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.462-18C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*122-18C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.553-18C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.91-18C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.589-18C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.91-18C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.764-18C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.553-18C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.492-18C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.589-18C>T
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

X-11780990-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780990
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780990
    reference: chr 0
allele count: 1
allele frequency: 1.154281229078653e-5
allele num: 86634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.798C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*156C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.623C>A
  hgvsp: ENSP00000312244.4:p.Thr208Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.125C>A
  hgvsp: ENSP00000370069.3:p.Thr42Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.587C>A
  hgvsp: ENSP00000381538.2:p.Thr196Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.623C>A
  hgvsp: ENSP00000338078.2:p.Thr208Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.176C>A
  hgvsp: ENSP00000354562.2:p.Thr59Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.587C>A
  hgvsp: ENSP00000401809.2:p.Thr196Lys
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.496C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.526C>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.125C>A
  hgvsp: ENSP00000370068.2:p.Thr42Lys
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr208Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-11780997-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011780997
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011780997
    reference: chr 0
allele count: 2
allele frequency: 2.301098774664902e-5
allele num: 86915
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.533G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.132G>T
  hgvsp: ENSP00000370069.3:p.Leu44Phe
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.503G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.594G>T
  hgvsp: ENSP00000401809.2:p.Leu198Phe
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.630G>T
  hgvsp: ENSP00000338078.2:p.Leu210Phe
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.594G>T
  hgvsp: ENSP00000381538.2:p.Leu198Phe
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.132G>T
  hgvsp: ENSP00000370068.2:p.Leu44Phe
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*163G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.183G>T
  hgvsp: ENSP00000354562.2:p.Leu61Phe
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.805G>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.630G>T
  hgvsp: ENSP00000312244.4:p.Leu210Phe
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu210Phe
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

X-11781007-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011781007
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011781007
    reference: chr 0
allele count: 1
allele frequency: 1.147486430972954e-5
allele num: 87147
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.543G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.142G>A
  hgvsp: ENSP00000370068.2:p.Val48Met
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370067
  ensembl transcript: ENST00000380691
  gene symbol: MSL3
  hgvsc: ENST00000380691.2:c.1G>A
  hgvsp: ENSP00000370067.2:p.Val1?
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*173G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.193G>A
  hgvsp: ENSP00000354562.2:p.Val65Met
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.513G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.604G>A
  hgvsp: ENSP00000401809.2:p.Val202Met
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.604G>A
  hgvsp: ENSP00000381538.2:p.Val202Met
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.640G>A
  hgvsp: ENSP00000312244.4:p.Val214Met
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.815G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.640G>A
  hgvsp: ENSP00000338078.2:p.Val214Met
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.142G>A
  hgvsp: ENSP00000370069.3:p.Val48Met
  variant of: http://identifiers.org/hgnc/7370
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val1?
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

X-11781009-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011781009
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011781009
    reference: chr 0
allele count: 2
allele frequency: 2.294104152328516e-5
allele num: 87180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.606G>A
  hgvsp: ENST00000398527.2:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.515G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370067
  ensembl transcript: ENST00000380691
  gene symbol: MSL3
  hgvsc: ENST00000380691.2:c.3G>A
  hgvsp: ENST00000380691.2:c.3G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.545G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000482871
  gene symbol: MSL3
  hgvsc: ENST00000482871.1:n.817G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.642G>A
  hgvsp: ENST00000312196.4:c.642G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.606G>A
  hgvsp: ENST00000421368.2:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.144G>A
  hgvsp: ENST00000380693.3:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.642G>A
  hgvsp: ENST00000337339.2:c.642G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*175G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.144G>A
  hgvsp: ENST00000380692.2:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.195G>A
  hgvsp: ENST00000361672.2:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val214Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

X-11781029-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011781029
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011781029
    reference: chr 0
allele count: 1
allele frequency: 1.1446755417177e-5
allele num: 87361
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.662C>T
  hgvsp: ENSP00000338078.2:p.Ala221Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.164C>T
  hgvsp: ENSP00000370068.2:p.Ala55Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000483645
  gene symbol: MSL3
  hgvsc: ENST00000483645.1:n.535C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370067
  ensembl transcript: ENST00000380691
  gene symbol: MSL3
  hgvsc: ENST00000380691.2:c.23C>T
  hgvsp: ENSP00000370067.2:p.Ala8Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*195C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.626C>T
  hgvsp: ENSP00000401809.2:p.Ala209Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.565C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.215C>T
  hgvsp: ENSP00000354562.2:p.Ala72Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.626C>T
  hgvsp: ENSP00000381538.2:p.Ala209Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.164C>T
  hgvsp: ENSP00000370069.3:p.Ala55Val
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.662C>T
  hgvsp: ENSP00000312244.4:p.Ala221Val
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24632
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala221Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

X-11781044-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011781044
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011781044
    reference: chr 0
allele count: 1
allele frequency: 1.144610031362315e-5
allele num: 87366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.230A>G
  hgvsp: ENSP00000354562.2:p.Asn77Ser
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370067
  ensembl transcript: ENST00000380691
  gene symbol: MSL3
  hgvsc: ENST00000380691.2:c.38A>G
  hgvsp: ENSP00000370067.2:p.Asn13Ser
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.179A>G
  hgvsp: ENSP00000370069.3:p.Asn60Ser
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.641A>G
  hgvsp: ENSP00000381538.2:p.Asn214Ser
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.641A>G
  hgvsp: ENSP00000401809.2:p.Asn214Ser
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.179A>G
  hgvsp: ENSP00000370068.2:p.Asn60Ser
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*210A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.677A>G
  hgvsp: ENSP00000338078.2:p.Asn226Ser
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.580A>G
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.677A>G
  hgvsp: ENSP00000312244.4:p.Asn226Ser
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn226Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

X-11781048-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011781048
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011781048
    reference: chr 0
allele count: 5
allele frequency: 5.725278248522878e-5
allele num: 87332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.183G>A
  hgvsp: ENST00000380693.3:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.681G>A
  hgvsp: ENST00000312196.4:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.645G>A
  hgvsp: ENST00000421368.2:c.645G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*214G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.183G>A
  hgvsp: ENST00000380692.2:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.234G>A
  hgvsp: ENST00000361672.2:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.645G>A
  hgvsp: ENST00000398527.2:c.645G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370067
  ensembl transcript: ENST00000380691
  gene symbol: MSL3
  hgvsc: ENST00000380691.2:c.42G>A
  hgvsp: ENST00000380691.2:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.584G>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.681G>A
  hgvsp: ENST00000337339.2:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu227Glu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

X-11781063-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011781063
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011781063
    reference: chr 0
allele count: 1
allele frequency: 1.148039722174387e-5
allele num: 87105
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.660T>A
  hgvsp: ENSP00000381538.2:p.His220Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000354562
  ensembl transcript: ENST00000361672
  gene symbol: MSL3
  hgvsc: ENST00000361672.2:c.249T>A
  hgvsp: ENSP00000354562.2:p.His83Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.696T>A
  hgvsp: ENSP00000338078.2:p.His232Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.696T>A
  hgvsp: ENSP00000312244.4:p.His232Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.198T>A
  hgvsp: ENSP00000370068.2:p.His66Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000418673
  ensembl transcript: ENST00000468149
  gene symbol: MSL3
  hgvsc: ENST00000468149.1:c.*229T>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000401809
  ensembl transcript: ENST00000421368
  gene symbol: MSL3
  hgvsc: ENST00000421368.2:c.660T>A
  hgvsp: ENSP00000401809.2:p.His220Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.599T>A
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370067
  ensembl transcript: ENST00000380691
  gene symbol: MSL3
  hgvsc: ENST00000380691.2:c.57T>A
  hgvsp: ENSP00000370067.2:p.His19Gln
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370069
  ensembl transcript: ENST00000380693
  gene symbol: MSL3
  hgvsc: ENST00000380693.3:c.198T>A
  hgvsp: ENSP00000370069.3:p.His66Gln
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His232Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

X-11781066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24011781066
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24011781066
    reference: chr 0
allele count: 1
allele frequency: 1.149464924077842e-5
allele num: 86997
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370068
  ensembl transcript: ENST00000380692
  gene symbol: MSL3
  hgvsc: ENST00000380692.2:c.201C>T
  hgvsp: ENST00000380692.2:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000005302
  ensembl transcript: ENST00000494268
  gene symbol: MSL3
  hgvsc: ENST00000494268.1:n.602C>T
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000381538
  ensembl transcript: ENST00000398527
  gene symbol: MSL3
  hgvsc: ENST00000398527.2:c.663C>T
  hgvsp: ENST00000398527.2:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000370067
  ensembl transcript: ENST00000380691
  gene symbol: MSL3
  hgvsc: ENST00000380691.2:c.60C>T
  hgvsp: ENST00000380691.2:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000312244
  ensembl transcript: ENST00000312196
  gene symbol: MSL3
  hgvsc: ENST00000312196.4:c.699C>T
  hgvsp: ENST00000312196.4:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000005302
  ensembl protein: ENSP00000338078
  ensembl transcript: ENST00000337339
  gene symbol: MSL3
  hgvsc: ENST00000337339.2:c.699C>T
  hgvsp: ENST00000337339.2:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7370
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.His233His
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 104
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 661
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15863
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16650
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5902
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 302
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 327
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5063
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5699
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.63371998039536e-4
allele num: 6121
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

DP
type: SiteQuality
SIO_000300: 9.86079e5

QD
type: SiteQuality
SIO_000300: 2.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 670
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1054
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 189
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17137
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17812
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26683
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5287
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6295
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1731
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5937
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.374070510016621e-5
allele num: 22862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 333
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.816e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.010021e6

GenotypeDepth
all individuals: 26750
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 297
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1055
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 167
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 234
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18079
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5093
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26373
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 339
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1775
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.293688278231e-5
allele num: 23290
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.667778519012675e-4
allele num: 5996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5326
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.217e1

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

DP
type: SiteQuality
SIO_000300: 1.020572e6

GenotypeDepth
all individuals: 703
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1054
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26077
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5052
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17830
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23460
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.836759371221282e-4
allele num: 4135
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1781
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.023544e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.607e1

GenotypeDepth
all individuals: 713
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3144
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1054
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26301
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19070
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4856
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1293
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6445
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4233
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

DP
type: SiteQuality
SIO_000300: 1.034319e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.586e1

VQSLOD
type: SiteQuality
SIO_000300: -5.59e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

GenotypeDepth
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5637
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 764
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1054
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5797
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27245
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1328
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24211
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.023878e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.711e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

GenotypeDepth
all individuals: 6318
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3964
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14352
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6381
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1042
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27412
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1841
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5435
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.550868486352357e-4
allele num: 6448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23741
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6165
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 355
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.006811e6

VQSLOD
type: SiteQuality
SIO_000300: -5.564e-1

MQ
type: SiteQuality
SIO_000300: 5.833e1

QD
type: SiteQuality
SIO_000300: 2.587e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

GenotypeDepth
all individuals: 3965
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 194
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1054
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2955
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27386
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15773
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6549
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1834
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.554726368159204e-4
allele num: 6432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

DP
type: SiteQuality
SIO_000300: 1.003289e6

VQSLOD
type: SiteQuality
SIO_000300: -1.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.723e1

GenotypeDepth
all individuals: 23829
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3546
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 194
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1054
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 408
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8990
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 382
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27467
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11933
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22119
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.524229074889868e-4
allele num: 5675
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1673
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 337
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5132
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.44901e5

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

FS
type: SiteQuality
SIO_000300: 2.556e0

QD
type: SiteQuality
SIO_000300: 1.066e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

GenotypeDepth
all individuals: 194
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1054
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1223
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9518
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2955
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11236
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 319
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3609
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20907
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4915
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1539
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5861
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.05e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.833e1

DP
type: SiteQuality
SIO_000300: 8.94859e5

VQSLOD
type: SiteQuality
SIO_000300: -2.567e-1

GenotypeDepth
all individuals: 17326
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23189
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15650
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2955
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 211
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4317
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.03e-1

DP
type: SiteQuality
SIO_000300: 6.64869e5

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.95e-1

FS
type: SiteQuality
SIO_000300: 6.465e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.51e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.429e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.453e1

GenotypeDepth
all individuals: 25130
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1015
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1508
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2955
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 216
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2736
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2761
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4301
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23494
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11756
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.436647173489279e-4
allele num: 4104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1743
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 199
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2371
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.79e-2

DP
type: SiteQuality
SIO_000300: 6.4354e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 1.108e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 431
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6977
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 916
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5704
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6765
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 893
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20508
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6005
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10213
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 183
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3598
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.347538574577516e-4
allele num: 1361
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.421e1

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.31e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.20443e5

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeDepth
all individuals: 1580
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 550
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8214
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36733
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4453
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 708
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.110149820637265e-5
allele num: 47390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8489
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8137
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.332e0

DP
type: SiteQuality
SIO_000300: 1.873276e6

QD
type: SiteQuality
SIO_000300: 3.122e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

GenotypeDepth
all individuals: 178
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5600
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1579
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4446
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075731497418244e-4
allele num: 9296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

DP
type: SiteQuality
SIO_000300: 1.8737e6

FS
type: SiteQuality
SIO_000300: 2.489e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-2

QD
type: SiteQuality
SIO_000300: 1.738e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

GenotypeDepth
all individuals: 152
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4442
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1975
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37365
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8485
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8191
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.109882690522407e-5
allele num: 47396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.246e-1

FS
type: SiteQuality
SIO_000300: 3.482e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.751e0

DP
type: SiteQuality
SIO_000300: 1.879285e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.279999999999999e-2

GenotypeDepth
all individuals: 781
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 900
bin: 9.75e1
variant carriers: 6

GenotypeDepth
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1939
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37365
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4442
bin: 9.75e1
variant carriers: 10

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.509661835748792e-3
allele num: 6624
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178550383028874e-4
allele num: 8485
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8191
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.879285e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.279999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.246e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

FS
type: SiteQuality
SIO_000300: 3.482e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.751e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

GenotypeDepth
all individuals: 1577
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24424
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8238
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4430
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 37949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.107215104517869e-5
allele num: 47456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.35599010484156e-4
allele num: 8489
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8343
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.885362e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 4.045e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeDepth
all individuals: 280
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 547
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1862
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.106149957877001e-5
allele num: 47480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

FS
type: SiteQuality
SIO_000300: 8.457000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

VQSLOD
type: SiteQuality
SIO_000300: -1.688e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.886099e6

QD
type: SiteQuality
SIO_000300: 7.61e0

MQ
type: SiteQuality
SIO_000300: 5.826e1

GenotypeDepth
all individuals: 389
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 280
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 113
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 150
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 145
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8334
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39734
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9145
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073998496402105e-4
allele num: 9311
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.290890790135883e-5
allele num: 47688
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: -4.901e-1

QD
type: SiteQuality
SIO_000300: 2.566e1

FS
type: SiteQuality
SIO_000300: 1.442e0

DP
type: SiteQuality
SIO_000300: 1.908408e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.262e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 101
bin: 8.75e1
variant carriers: 24

GenotypeDepth
all individuals: 384
bin: 5.75e1
variant carriers: 21

GenotypeDepth
all individuals: 93
bin: 9.25e1
variant carriers: 20

GenotypeDepth
all individuals: 165
bin: 7.25e1
variant carriers: 18

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40564
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4480
bin: 9.75e1
variant carriers: 891

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1857
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1949
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 857
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8372
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1156
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 628
bin: 9.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9559
num of homozygotes: 0

Latino
type: Population
allele count: 37
allele frequency: 3.972088030059044e-3
allele num: 9315
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.205128205128205e-3
allele num: 624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 3.138797631254054e-4
allele num: 47789
num of homozygotes: 0

African
type: Population
allele count: 892
allele frequency: 1.049411764705882e-1
allele num: 8500
num of homozygotes: 38

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.408e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.960778e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

QD
type: SiteQuality
SIO_000300: 1.699e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.086e0

VQSLOD
type: SiteQuality
SIO_000300: 2.592e1

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

GenotypeDepth
all individuals: 76
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 85
bin: 1.75e1
variant carriers: 9

GenotypeDepth
all individuals: 152
bin: 7.25e1
variant carriers: 4

GenotypeDepth
all individuals: 4647
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 41215
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1190
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 457
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1996
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 8498
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3713
bin: 9.75e1
variant carriers: 71

GenotypeQuality
all individuals: 640
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1903
bin: 7.25e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8491
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.14638334406525e-4
allele num: 9318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

South Asian
type: Population
allele count: 102
allele frequency: 1.054699617412884e-2
allele num: 9671
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47814
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.121e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.694e1

DP
type: SiteQuality
SIO_000300: 1.855938e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

QD
type: SiteQuality
SIO_000300: 1.85e1

GenotypeDepth
all individuals: 205
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25229
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8846
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 375
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8460
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3642
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41121
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07469102632993e-4
allele num: 9305
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47777
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8443
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.129e0

DP
type: SiteQuality
SIO_000300: 1.848216e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.247e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 3.617e1

QD
type: SiteQuality
SIO_000300: 1.25e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.156e0

GenotypeDepth
all individuals: 115
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1588
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 375
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40613
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1955
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3634
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 635
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09819555182543e-5
allele num: 47660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.506e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 2.875e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-1

DP
type: SiteQuality
SIO_000300: 1.838556e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

GenotypeDepth
all individuals: 115
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 363
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3626
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8367
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.078748651564186e-4
allele num: 9270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8389
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47581
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6597
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0337e1

VQSLOD
type: SiteQuality
SIO_000300: -2.323e0

MQRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 1.83138e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 3.376e1

GenotypeDepth
all individuals: 3801
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 518
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33957
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6697
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.690928843020098e-5
allele num: 46025
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8116
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.182e0

FS
type: SiteQuality
SIO_000300: 8.968999999999999e0

QD
type: SiteQuality
SIO_000300: 2.353e1

VQSLOD
type: SiteQuality
SIO_000300: -8.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.67644e6

GenotypeDepth
all individuals: 255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3603
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 28337
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6069
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12226
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.685087797486407e-5
allele num: 44876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6209
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8962
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.206e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-2

QD
type: SiteQuality
SIO_000300: 3.403e1

DP
type: SiteQuality
SIO_000300: 1.56229e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

GenotypeDepth
all individuals: 5182
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2220
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25634
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3596
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 985
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14001
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5270
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8891
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44121
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6129
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4309
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7857
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.258653241032096e-4
allele num: 7945
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: -3.478e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.054e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.28e0

QD
type: SiteQuality
SIO_000300: 8.960000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

DP
type: SiteQuality
SIO_000300: 1.496491e6

GenotypeDepth
all individuals: 6183
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24810
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14408
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2369
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 592
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4303
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8881
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.274433097550436e-5
allele num: 43967
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7829
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.479729e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

FS
type: SiteQuality
SIO_000300: 6.537e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

QD
type: SiteQuality
SIO_000300: 1.565e1

GenotypeDepth
all individuals: 375
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3592
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15965
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 19940
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4837
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4263
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43149
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.610625244746117e-4
allele num: 7661
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8785
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.043e0

QD
type: SiteQuality
SIO_000300: 2.214e1

MQRankSum
type: SiteQuality
SIO_000300: -4.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.812e0

DP
type: SiteQuality
SIO_000300: 1.389657e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.858e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 375
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9957
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4098
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2539
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6563
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4513
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3590
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14491
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.586157432311279e-4
allele num: 5577
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4133
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.654e1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.403e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

QD
type: SiteQuality
SIO_000300: 1.565e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

DP
type: SiteQuality
SIO_000300: 1.175939e6

GenotypeDepth
all individuals: 6890
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6395
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29856
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3927
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7913
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6581
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 567
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46134
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.077934677158564e-4
allele num: 9277
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 4.546e0

QD
type: SiteQuality
SIO_000300: 2.146e1

DP
type: SiteQuality
SIO_000300: 2.817084e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

VQSLOD
type: SiteQuality
SIO_000300: -1.934e0

GenotypeDepth
all individuals: 1271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29853
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1758
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2566
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3880
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6857
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.260875047282814e-4
allele num: 7931
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9277
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 1.596e1

MQ
type: SiteQuality
SIO_000300: 5.61e1

DP
type: SiteQuality
SIO_000300: 2.820632e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.072e0

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

GenotypeDepth
all individuals: 1609
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3159
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2712
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1683
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29852
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3882
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.330691611450349e-5
allele num: 46182
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

DP
type: SiteQuality
SIO_000300: 2.821692e6

FS
type: SiteQuality
SIO_000300: 5.17e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 1.875e1

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

GenotypeDepth
all individuals: 873
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3169
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3510
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29856
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7942
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3956
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.160107141314209e-5
allele num: 46294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6461
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 573
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

DP
type: SiteQuality
SIO_000300: 2.831466e6

QD
type: SiteQuality
SIO_000300: 1.825e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

FS
type: SiteQuality
SIO_000300: 3.651e0

MQRankSum
type: SiteQuality
SIO_000300: 6.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.424e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 1270
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3778
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29861
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 596
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3987
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9283
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8089
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 2.513e0

VQSLOD
type: SiteQuality
SIO_000300: -1.314e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

QD
type: SiteQuality
SIO_000300: 2.029e1

DP
type: SiteQuality
SIO_000300: 2.844145e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.401e0

GenotypeDepth
all individuals: 2603
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 873
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3590
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1609
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29863
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3716
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 351
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4026
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8873
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8149
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46771
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.427755568246716e-4
allele num: 7004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.875e1

VQSLOD
type: SiteQuality
SIO_000300: -1.277e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

DP
type: SiteQuality
SIO_000300: 2.849999e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 2337
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2957
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10145
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29863
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2359
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2717
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8085
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.114164904862579e-5
allele num: 47300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 1.857e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.289e1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.957e0

DP
type: SiteQuality
SIO_000300: 2.874571e6

GenotypeDepth
all individuals: 2338
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 873
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2877
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.186380353541345e-4
allele num: 8429
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8944
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.24e-1

DP
type: SiteQuality
SIO_000300: 2.894985e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.127e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.146e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeDepth
all individuals: 2024
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4439
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7027
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2889
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4339
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9419
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8459
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094898921127055e-5
allele num: 47735
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.922e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

DP
type: SiteQuality
SIO_000300: 2.908232e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 8.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

FS
type: SiteQuality
SIO_000300: 3.439e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.79e-1

GenotypeDepth
all individuals: 2716
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2339
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 873
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4336
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12136
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2885
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29868
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094898921127055e-5
allele num: 47735
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8461
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.353e-1

DP
type: SiteQuality
SIO_000300: 2.909276e6

QD
type: SiteQuality
SIO_000300: 1.783e1

GenotypeDepth
all individuals: 4440
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7725
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2761
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4355
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29872
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12201
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.107037505267594e-4
allele num: 9492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.188744842607913e-5
allele num: 47747
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8463
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.153e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.065e0

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-2

FS
type: SiteQuality
SIO_000300: 5.600000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.54e0

DP
type: SiteQuality
SIO_000300: 2.910302e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.066e-1

QD
type: SiteQuality
SIO_000300: 2.284e1

GenotypeDepth
all individuals: 3359
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 2339
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3586
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4372
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12563
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2888
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29877
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 3247
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07342206955775e-4
allele num: 9316
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.246494234964163e-3
allele num: 9627
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.6e-3
allele num: 625
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.046200200870439e-4
allele num: 47792
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

FS
type: SiteQuality
SIO_000300: 1.183e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.641e-1

QD
type: SiteQuality
SIO_000300: 2.393e1

VQSLOD
type: SiteQuality
SIO_000300: 1.642e1

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

DP
type: SiteQuality
SIO_000300: 2.914789e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.87e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

GenotypeDepth
all individuals: 8327
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1607
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 874
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2897
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29870
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1640
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089471154850707e-5
allele num: 47859
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.371e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

QD
type: SiteQuality
SIO_000300: 2.024e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.63e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-1

DP
type: SiteQuality
SIO_000300: 2.921765e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 1607
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1270
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2340
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29871
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3275
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13286
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47894
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.008267795926598e-4
allele num: 9918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8495
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.127e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.25e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 2.924865e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 3357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13458
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2901
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29870
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086811352253756e-5
allele num: 47920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

DP
type: SiteQuality
SIO_000300: 2.926867e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: -2.113e0

FS
type: SiteQuality
SIO_000300: 1.05e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: -2.084e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.495e1

GenotypeDepth
all individuals: 2340
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13447
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29869
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3280
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4421
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47925
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.00160128102482e-4
allele num: 9992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.926996e6

VQSLOD
type: SiteQuality
SIO_000300: -6.487000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.611e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 3.336e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

GenotypeDepth
all individuals: 2955
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13442
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2901
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4418
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072961373390558e-4
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47927
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.363e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e-1

FS
type: SiteQuality
SIO_000300: 8.374000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

MQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-1

DP
type: SiteQuality
SIO_000300: 2.9269e6

GenotypeDepth
all individuals: 7118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4409
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2213
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3270
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47909
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.001101211332466e-4
allele num: 9989
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.675e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.251e0

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 2.925942e6

QD
type: SiteQuality
SIO_000300: 7.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeDepth
all individuals: 3360
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 1271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4394
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13063
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29873
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2899
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8463
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.878914405010439e-4
allele num: 47900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 1.777e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

QD
type: SiteQuality
SIO_000300: 1.808e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.499e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.924088e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.71e0

GenotypeDepth
all individuals: 1608
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 872
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12909
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4394
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088118605136772e-5
allele num: 47890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

VQSLOD
type: SiteQuality
SIO_000300: -1.392e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.25e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.404e0

DP
type: SiteQuality
SIO_000300: 2.92242e6

GenotypeQuality
all individuals: 199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3260
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29867
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2896
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47879
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9957
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.344e1

DP
type: SiteQuality
SIO_000300: 2.918806e6

MQ
type: SiteQuality
SIO_000300: 5.926e1

VQSLOD
type: SiteQuality
SIO_000300: 6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.13e-2

GenotypeQuality
all individuals: 4343
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2898
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12188
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29867
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.004621257785815e-4
allele num: 9954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.27e-1

QD
type: SiteQuality
SIO_000300: 1.302e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 1.792e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.916116e6

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 744
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2372
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10563
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3247
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47855
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.187507421921387e-4
allele num: 8421
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 6.894e0

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.009e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 1.428e1

DP
type: SiteQuality
SIO_000300: 2.902212e6

GenotypeQuality
all individuals: 537
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29864
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2886
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.091262704420929e-5
allele num: 47818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8387
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.89255e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 2.841e1

GenotypeQuality
all individuals: 1102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2395
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9884
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22587
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3701
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46081
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8365
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4484
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.469723691945914e-4
allele num: 6804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9201
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

DP
type: SiteQuality
SIO_000300: 1.772589e6

QD
type: SiteQuality
SIO_000300: 2.775e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.032e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 278
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4710
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9887
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8375
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4491
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9209
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.955e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 1.794822e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 248
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4703
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3817
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9887
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25429
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6561
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9207
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4493
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6903
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8379
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.16277007591323e-5
allele num: 46237
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.36e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.313e0

QD
type: SiteQuality
SIO_000300: 1.573e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

DP
type: SiteQuality
SIO_000300: 1.802608e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.54e-1

GenotypeQuality
all individuals: 124
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4874
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3803
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9887
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 133
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2788
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28236
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9237
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.149613069647463e-5
allele num: 46520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4497
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6587
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

DP
type: SiteQuality
SIO_000300: 1.83368e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.569e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

FS
type: SiteQuality
SIO_000300: 1.484e0

QD
type: SiteQuality
SIO_000300: 1.203e1

GenotypeDepth
all individuals: 601
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33339
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9888
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5331
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.097315436241611e-5
allele num: 47680
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.507e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.27e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

FS
type: SiteQuality
SIO_000300: 4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

DP
type: SiteQuality
SIO_000300: 1.916616e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.01e-1

GenotypeDepth
all individuals: 707
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33622
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5366
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9888
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 219
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074806534823732e-4
allele num: 9304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094898921127055e-5
allele num: 47735
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.241e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.141e0

VQSLOD
type: SiteQuality
SIO_000300: -2.756e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.922499e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
all individuals: 6780
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 169
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33912
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9887
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2865
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9735
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507613447911955e-4
allele num: 6633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.928129e6

QD
type: SiteQuality
SIO_000300: 3.01e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.73e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeDepth
all individuals: 336
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 169
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6787
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2045
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9887
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.182350480970305e-5
allele num: 47820
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.026e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e0

QD
type: SiteQuality
SIO_000300: 1.985e1

DP
type: SiteQuality
SIO_000300: 1.929191e6

GenotypeDepth
all individuals: 1404
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5402
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9886
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2044
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47877
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.011940902651285e-4
allele num: 9882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.81e-2

MQ
type: SiteQuality
SIO_000300: 5.922e1

DP
type: SiteQuality
SIO_000300: 1.934603e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.734e1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9886
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2044
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2864
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5423
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47879
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.011429149388085e-4
allele num: 9887
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.038e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.906e0

VQSLOD
type: SiteQuality
SIO_000300: -2.317e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

DP
type: SiteQuality
SIO_000300: 1.935288e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e0

MQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

QD
type: SiteQuality
SIO_000300: 2.009e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5418
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9888
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2046
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9863
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.044539149327317e-4
allele num: 47868
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

FS
type: SiteQuality
SIO_000300: 1.716e0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 1.934866e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.484e0

QD
type: SiteQuality
SIO_000300: 1.245e1

GenotypeQuality
all individuals: 33559
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9883
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9691
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.091131511260743e-5
allele num: 47821
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.93029e6

FS
type: SiteQuality
SIO_000300: 1.3697e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.061e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.057e0