X-153051841-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051841
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051841
    reference: chr 0
allele count: 6
allele frequency: 9.729992702505473e-5
allele num: 61665
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.988C>A
  hgvsp: ENSP00000359110.3:p.Leu330Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.814C>A
  hgvsp: ENSP00000408529.2:p.Leu272Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.988C>A
  hgvsp: ENSP00000359111.1:p.Leu330Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.404C>A
  hgvsp: ENSP00000400115.1:p.Leu136Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.988C>A
  hgvsp: ENSP00000217901.5:p.Leu330Met
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu330Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

X-153051845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051845
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051845
    reference: chr 0
allele count: 1
allele frequency: 1.695317532973926e-5
allele num: 58986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.810C>T
  hgvsp: ENST00000427365.2:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.984C>T
  hgvsp: ENST00000370092.3:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.984C>T
  hgvsp: ENST00000370093.1:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.984C>T
  hgvsp: ENST00000217901.5:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.400C>T
  hgvsp: ENST00000454076.1:c.400C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Thr328Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

X-153051845-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051845
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051845
    reference: chr 0
allele count: 1
allele frequency: 1.695317532973926e-5
allele num: 58986
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.984C>A
  hgvsp: ENST00000217901.5:c.984C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.810C>A
  hgvsp: ENST00000427365.2:c.810C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.984C>A
  hgvsp: ENST00000370093.1:c.984C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.984C>A
  hgvsp: ENST00000370092.3:c.984C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.400C>A
  hgvsp: ENST00000454076.1:c.400C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Thr328Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

X-153051846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051846
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051846
    reference: chr 0
allele count: 54
allele frequency: 9.147735935355999e-4
allele num: 59031
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.983C>T
  hgvsp: ENSP00000359110.3:p.Thr328Ile
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.983C>T
  hgvsp: ENSP00000359111.1:p.Thr328Ile
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.399C>T
  hgvsp: ENSP00000400115.1:p.Thr134Ile
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.809C>T
  hgvsp: ENSP00000408529.2:p.Thr270Ile
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.983C>T
  hgvsp: ENSP00000217901.5:p.Thr328Ile
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr328Ile
num of homozygotes: 2
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

X-153051851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051851
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051851
    reference: chr 0
allele count: 69
allele frequency: 1.217081473903304e-3
allele num: 56693
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.978G>A
  hgvsp: ENST00000217901.5:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.804G>A
  hgvsp: ENST00000427365.2:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.978G>A
  hgvsp: ENST00000370092.3:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.978G>A
  hgvsp: ENST00000370093.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.394G>A
  hgvsp: ENST00000454076.1:c.394G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19168
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7585
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 216
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13187
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 105
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genotype depth: GenotypeDepth
  all individuals: 85
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 161
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5436
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1600
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 9.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.5e0
  variant carriers: 2
hgvs: p.Thr326Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

X-153051852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051852
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051852
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 56065
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.977C>T
  hgvsp: ENSP00000359111.1:p.Thr326Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.803C>T
  hgvsp: ENSP00000408529.2:p.Thr268Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.393C>T
  hgvsp: ENSP00000400115.1:p.Thr132Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.977C>T
  hgvsp: ENSP00000217901.5:p.Thr326Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.977C>T
  hgvsp: ENSP00000359110.3:p.Thr326Met
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13231
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 470
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14660
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genotype quality: GenotypeQuality
  all individuals: 27634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr326Met
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-153051862-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051862
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051862
    reference: chr 0
allele count: 1
allele frequency: 1.952629215238318e-5
allele num: 51213
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.793G>A
  hgvsp: ENSP00000408529.2:p.Ala265Thr
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.383G>A
  hgvsp: ENSP00000400115.1:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.967G>A
  hgvsp: ENSP00000217901.5:p.Ala323Thr
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.967G>A
  hgvsp: ENSP00000359110.3:p.Ala323Thr
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.967G>A
  hgvsp: ENSP00000359111.1:p.Ala323Thr
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20216
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 310
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2072
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 231
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Ala323Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

X-153051878-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051878
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051878
    reference: chr 0
allele count: 11
allele frequency: 2.494670476708849e-4
allele num: 44094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.951C>T
  hgvsp: ENST00000370093.1:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.367C>T
  hgvsp: ENST00000454076.1:c.367C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.951C>T
  hgvsp: ENST00000370092.3:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.951C>T
  hgvsp: ENST00000217901.5:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.777C>T
  hgvsp: ENST00000427365.2:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 412
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 93
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19643
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 812
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25257
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Ile317Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum

X-153051889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051889
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051889
    reference: chr 0
allele count: 1
allele frequency: 2.63275675960298e-5
allele num: 37983
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.940G>A
  hgvsp: ENSP00000359111.1:p.Gly314Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.940G>A
  hgvsp: ENSP00000217901.5:p.Gly314Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.356G>A
  hgvsp: ENSP00000400115.1:p.Gly120Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.766G>A
  hgvsp: ENSP00000408529.2:p.Gly256Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.940G>A
  hgvsp: ENSP00000359110.3:p.Gly314Ser
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
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genotype depth: GenotypeDepth
  all individuals: 304
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genotype depth: GenotypeDepth
  all individuals: 379
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 161
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11448
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly314Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

X-153051899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051899
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051899
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 33566
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.930G>A
  hgvsp: ENST00000217901.5:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.930G>A
  hgvsp: ENST00000370093.1:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.930G>A
  hgvsp: ENST00000370092.3:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.346G>A
  hgvsp: ENST00000454076.1:c.346G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.756G>A
  hgvsp: ENST00000427365.2:c.756G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18826
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2074
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3326
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genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr310Thr
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

X-153051907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051907
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051907
    reference: chr 0
allele count: 13354
allele frequency: 4.403627370156636e-1
allele num: 30325
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.925-3C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.925-3C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.925-3C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.341-3C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.751-3C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.25e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 18288
  bin: 7.5e0
  variant carriers: 9144
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 549
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 2.25e1
  variant carriers: 914
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 189
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
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  variant carriers: 50
genotype depth: GenotypeDepth
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  variant carriers: 3494
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 4922
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 2111
genotype depth: GenotypeDepth
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  variant carriers: 1449
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 156
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  variant carriers: 74
genotype quality: GenotypeQuality
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  variant carriers: 1692
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 949
genotype quality: GenotypeQuality
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  variant carriers: 7740
genotype quality: GenotypeQuality
  all individuals: 10525
  bin: 2.25e1
  variant carriers: 2332
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 1130
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 5.75e1
  variant carriers: 396
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 560
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 539
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 6.25e1
  variant carriers: 501
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 2.5e0
  variant carriers: 54
hgvs: c.925-3C>T
num of homozygotes: 2094
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

X-153051910-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051910
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051910
    reference: chr 0
allele count: 2
allele frequency: 9.11410864017499e-5
allele num: 21944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.925-6C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.925-6C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.925-6C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.341-6C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.751-6C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28021
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14338
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 9.75e1
  variant carriers: 1
hgvs: c.925-6C>T
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-153051919-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051919
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051919
    reference: chr 0
allele count: 2
allele frequency: 1.067805659369995e-4
allele num: 18730
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.925-15G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.925-15G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.925-15G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.751-15G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.341-15G>A
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

X-153051920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051920
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051920
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 18055
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.925-16C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.925-16C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.751-16C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.925-16C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.341-16C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS

X-153051922-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051922
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051922
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 17825
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.925-18T>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.751-18T>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.925-18T>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.341-18T>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.925-18T>G
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-153051933-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051933
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051933
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.925-29A>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.751-29A>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.341-29A>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.925-29A>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.925-29A>G
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-153051939-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051939
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051939
    reference: chr 0
allele count: 1
allele frequency: 7.272198385571959e-5
allele num: 13751
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.925-35C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.341-35C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.925-35C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.751-35C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.925-35C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27399
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-153051942-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051942
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051942
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.341-38C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.751-38C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.925-38C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.925-38C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.925-38C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD

X-153051951-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051951
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051951
    reference: chr 0
allele count: 1
allele frequency: 8.18464560484531e-5
allele num: 12218
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.925-47G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.341-47G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.751-47G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.925-47G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.925-47G>A
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-153051952-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153051952
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153051952
    reference: chr 0
allele count: 1
allele frequency: 8.159268929503917e-5
allele num: 12256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.751-48C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.925-48C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.341-48C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.925-48C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.925-48C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8619
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3621
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

X-153052213-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052213
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052213
    reference: chr 0
allele count: 5
allele frequency: 6.114936343512665e-5
allele num: 81767
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.340+43G>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.750+43G>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.924+43G>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.924+43G>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.924+43G>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9932
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genotype quality: GenotypeQuality
  all individuals: 350
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3096
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 36786
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
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genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-153052215-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052215
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052215
    reference: chr 0
allele count: 1
allele frequency: 1.222673252799922e-5
allele num: 81788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.924+41C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.750+41C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.924+41C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.924+41C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.340+41C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
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genotype quality: GenotypeQuality
  all individuals: 583
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7337
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
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genotype quality: GenotypeQuality
  all individuals: 2045
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genotype quality: GenotypeQuality
  all individuals: 705
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

X-153052216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052216
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052216
    reference: chr 0
allele count: 1
allele frequency: 1.222463998435246e-5
allele num: 81802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.924+40C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.340+40C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.750+40C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.924+40C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.924+40C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10955
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9925
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 341
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7329
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

X-153052217-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052217
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052217
    reference: chr 0
allele count: 3
allele frequency: 3.668423433888895e-5
allele num: 81779
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.924+39T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.924+39T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.340+39T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.924+39T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.750+39T>C
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27437
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

X-153052224-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052224
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052224
    reference: chr 0
allele count: 7
allele frequency: 8.589167832339444e-5
allele num: 81498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.750+32G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.924+32G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.340+32G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.924+32G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.924+32G>A
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

X-153052225-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052225
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052225
    reference: chr 0
allele count: 2
allele frequency: 2.443583759942331e-5
allele num: 81847
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.924+31C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.340+31C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.750+31C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.924+31C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.924+31C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 36958
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

X-153052232-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052232
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052232
    reference: chr 0
allele count: 1
allele frequency: 1.216485815775388e-5
allele num: 82204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.750+24G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.924+24G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.340+24G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.924+24G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.924+24G>A
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

X-153052233-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052233
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052233
    reference: chr 0
allele count: 223
allele frequency: 2.710191779490047e-3
allele num: 82282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.924+23C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.924+23C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.340+23C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.750+23C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.924+23C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9912
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
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  variant carriers: 13
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 9
genotype depth: GenotypeDepth
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  variant carriers: 10
genotype depth: GenotypeDepth
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  variant carriers: 12
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 9.75e1
  variant carriers: 199
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 2
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

X-153052234-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052234
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052234
    reference: chr 0
allele count: 3
allele frequency: 3.647549454691357e-5
allele num: 82247
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.924+22G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.924+22G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.340+22G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.750+22G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.924+22G>A
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 154
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 171
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 122
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 86
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7383
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

X-153052235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052235
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052235
    reference: chr 0
allele count: 6
allele frequency: 7.276343394899284e-5
allele num: 82459
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.924+21C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.924+21C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.924+21C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.750+21C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.340+21C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28038
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1032
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-153052236-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052236
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052236
    reference: chr 0
allele count: 1
allele frequency: 1.212473931810466e-5
allele num: 82476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.340+20C>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.924+20C>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.924+20C>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.924+20C>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.750+20C>A
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9958
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

X-153052248-GCACT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052248
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052244
    reference: chr 0
allele count: 1
allele frequency: 1.20167754184842e-5
allele num: 83217
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.750+4_750+7delAGTG
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.924+4_924+7delAGTG
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.924+4_924+7delAGTG
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.340+4_340+7delAGTG
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.924+4_924+7delAGTG
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3605
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39402
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.25e1
  variant carriers: 0
hgvs: c.924+4_924+7delAGTG
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: GCACT
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-153052268-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052268
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052268
    reference: chr 0
allele count: 1
allele frequency: 1.183852255238546e-5
allele num: 84470
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.912G>A
  hgvsp: ENST00000217901.5:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.328G>A
  hgvsp: ENST00000454076.1:c.328G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.912G>A
  hgvsp: ENST00000370092.3:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.912G>A
  hgvsp: ENST00000370093.1:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.843G>A
  hgvsp: ENST00000444450.1:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.738G>A
  hgvsp: ENST00000427365.2:c.738G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala304Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

X-153052271-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052271
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052271
    reference: chr 0
allele count: 2
allele frequency: 2.357851054548884e-5
allele num: 84823
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.735C>T
  hgvsp: ENST00000427365.2:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.909C>T
  hgvsp: ENST00000370092.3:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.840C>T
  hgvsp: ENST00000444450.1:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.909C>T
  hgvsp: ENST00000370093.1:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.909C>T
  hgvsp: ENST00000217901.5:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.325C>T
  hgvsp: ENST00000454076.1:c.325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7646
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr303Tyr
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-153052275-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052275
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052275
    reference: chr 0
allele count: 2
allele frequency: 2.349927739722004e-5
allele num: 85109
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.321T>C
  hgvsp: ENSP00000400115.1:p.Val108Ala
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.905T>C
  hgvsp: ENSP00000217901.5:p.Val302Ala
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.731T>C
  hgvsp: ENSP00000408529.2:p.Val244Ala
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.836T>C
  hgvsp: ENSP00000401862.1:p.Val279Ala
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.905T>C
  hgvsp: ENSP00000359110.3:p.Val302Ala
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.905T>C
  hgvsp: ENSP00000359111.1:p.Val302Ala
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28870
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7667
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val302Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

X-153052277-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052277
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052277
    reference: chr 0
allele count: 5
allele frequency: 5.867787022802221e-5
allele num: 85211
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.319T>C
  hgvsp: ENST00000454076.1:c.319T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.834T>C
  hgvsp: ENST00000444450.1:c.834T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.729T>C
  hgvsp: ENST00000427365.2:c.729T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.903T>C
  hgvsp: ENST00000370092.3:c.903T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.903T>C
  hgvsp: ENST00000370093.1:c.903T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.903T>C
  hgvsp: ENST00000217901.5:c.903T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7680
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His301His
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

X-153052310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052310
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052310
    reference: chr 0
allele count: 4
allele frequency: 4.61968447555032e-5
allele num: 86586
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.870C>T
  hgvsp: ENST00000217901.5:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.870C>T
  hgvsp: ENST00000370093.1:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.801C>T
  hgvsp: ENST00000444450.1:c.801C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.696C>T
  hgvsp: ENST00000427365.2:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.286C>T
  hgvsp: ENST00000454076.1:c.286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.870C>T
  hgvsp: ENST00000370092.3:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7860
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Gly290Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

X-153052311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052311
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052311
    reference: chr 0
allele count: 1
allele frequency: 1.154894442647942e-5
allele num: 86588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.695G>A
  hgvsp: ENSP00000408529.2:p.Gly232Asp
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.869G>A
  hgvsp: ENSP00000217901.5:p.Gly290Asp
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.285G>A
  hgvsp: ENSP00000400115.1:p.Gly96Asp
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.869G>A
  hgvsp: ENSP00000359111.1:p.Gly290Asp
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.869G>A
  hgvsp: ENSP00000359110.3:p.Gly290Asp
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.800G>A
  hgvsp: ENSP00000401862.1:p.Gly267Asp
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7862
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly290Asp
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-153052321-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052321
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052320
    reference: chr 0
allele count: 1
allele frequency: 1.152684602439081e-5
allele num: 86754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.684delA
  hgvsp: ENSP00000408529.2:p.Leu229TrpfsTer48
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.858delA
  hgvsp: ENSP00000359111.1:p.Leu287TrpfsTer48
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.858delA
  hgvsp: ENSP00000217901.5:p.Leu287TrpfsTer48
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.274delA
  hgvsp: ENSP00000400115.1:p.Leu93TrpfsTer48
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.789delA
  hgvsp: ENSP00000401862.1:p.Leu264TrpfsTer?
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.858delA
  hgvsp: ENSP00000359110.3:p.Leu287TrpfsTer48
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu287TrpfsTer48
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: GT
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

X-153052325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052325
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052325
    reference: chr 0
allele count: 1
allele frequency: 1.152087005610664e-5
allele num: 86799
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.271G>A
  hgvsp: ENST00000454076.1:c.271G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.786G>A
  hgvsp: ENST00000444450.1:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.855G>A
  hgvsp: ENST00000370092.3:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.681G>A
  hgvsp: ENST00000427365.2:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.855G>A
  hgvsp: ENST00000217901.5:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.855G>A
  hgvsp: ENST00000370093.1:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29934
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala285Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

X-153052326-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052326
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052326
    reference: chr 0
allele count: 1
allele frequency: 1.151901212951977e-5
allele num: 86813
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.270C>T
  hgvsp: ENSP00000400115.1:p.Ala91Val
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.854C>T
  hgvsp: ENSP00000217901.5:p.Ala285Val
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.785C>T
  hgvsp: ENSP00000401862.1:p.Ala262Val
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.680C>T
  hgvsp: ENSP00000408529.2:p.Ala227Val
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.854C>T
  hgvsp: ENSP00000359110.3:p.Ala285Val
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.854C>T
  hgvsp: ENSP00000359111.1:p.Ala285Val
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
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genotype depth: GenotypeDepth
  all individuals: 440
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala285Val
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

X-153052343-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052343
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052343
    reference: chr 0
allele count: 8
allele frequency: 9.199526224399444e-5
allele num: 86961
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.768C>T
  hgvsp: ENST00000444450.1:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.837C>T
  hgvsp: ENST00000370093.1:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.837C>T
  hgvsp: ENST00000217901.5:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.663C>T
  hgvsp: ENST00000427365.2:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.253C>T
  hgvsp: ENST00000454076.1:c.253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.837C>T
  hgvsp: ENST00000370092.3:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10274
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 395
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 23
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 44312
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile279Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-153052345-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052345
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052345
    reference: chr 0
allele count: 2
allele frequency: 2.299855109128125e-5
allele num: 86962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.835A>G
  hgvsp: ENSP00000359110.3:p.Ile279Val
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.835A>G
  hgvsp: ENSP00000359111.1:p.Ile279Val
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.661A>G
  hgvsp: ENSP00000408529.2:p.Ile221Val
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.835A>G
  hgvsp: ENSP00000217901.5:p.Ile279Val
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.251A>G
  hgvsp: ENSP00000400115.1:p.Ile85Val
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.766A>G
  hgvsp: ENSP00000401862.1:p.Ile256Val
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10269
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile279Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

X-153052359-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052359
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052359
    reference: chr 0
allele count: 1
allele frequency: 1.150350857011388e-5
allele num: 86930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.237A>G
  hgvsp: ENSP00000400115.1:p.Asn80Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.752A>G
  hgvsp: ENSP00000401862.1:p.Asn251Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.647A>G
  hgvsp: ENSP00000408529.2:p.Asn216Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.821A>G
  hgvsp: ENSP00000359111.1:p.Asn274Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.821A>G
  hgvsp: ENSP00000217901.5:p.Asn274Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.821A>G
  hgvsp: ENSP00000359110.3:p.Asn274Ser
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44010
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn274Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

X-153052373-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052373
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052373
    reference: chr 0
allele count: 1
allele frequency: 1.152126826121019e-5
allele num: 86796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.633C>G
  hgvsp: ENST00000427365.2:c.633C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.223C>G
  hgvsp: ENST00000454076.1:c.223C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.807C>G
  hgvsp: ENST00000370092.3:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.807C>G
  hgvsp: ENST00000217901.5:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.807C>G
  hgvsp: ENST00000370093.1:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.738C>G
  hgvsp: ENST00000444450.1:c.738C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
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genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7799
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
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genotype quality: GenotypeQuality
  all individuals: 28
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43347
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genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val269Val
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-153052392-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052392
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052392
    reference: chr 0
allele count: 1
allele frequency: 1.159259001646148e-5
allele num: 86262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.788G>A
  hgvsp: ENSP00000359110.3:p.Arg263Gln
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.719G>A
  hgvsp: ENSP00000401862.1:p.Arg240Gln
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.788G>A
  hgvsp: ENSP00000217901.5:p.Arg263Gln
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.204G>A
  hgvsp: ENSP00000400115.1:p.Arg69Gln
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.788G>A
  hgvsp: ENSP00000359111.1:p.Arg263Gln
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.614G>A
  hgvsp: ENSP00000408529.2:p.Arg205Gln
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29530
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41408
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg263Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

X-153052399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052399
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052399
    reference: chr 0
allele count: 1
allele frequency: 1.16122439500209e-5
allele num: 86116
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.781G>A
  hgvsp: ENSP00000217901.5:p.Val261Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.781G>A
  hgvsp: ENSP00000359111.1:p.Val261Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.781G>A
  hgvsp: ENSP00000359110.3:p.Val261Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.712G>A
  hgvsp: ENSP00000401862.1:p.Val238Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.197G>A
  hgvsp: ENSP00000400115.1:p.Val67Met
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.607G>A
  hgvsp: ENSP00000408529.2:p.Val203Met
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val261Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

X-153052406-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052406
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052406
    reference: chr 0
allele count: 3
allele frequency: 3.492473719135263e-5
allele num: 85899
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.778-4G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.709-4G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.194-4G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.778-4G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.604-4G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.778-4G>A
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1210
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 35
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 179
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 86
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genotype quality: GenotypeQuality
  all individuals: 7608
  bin: 6.75e1
  variant carriers: 0
hgvs: c.778-4G>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

X-153052407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052407
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052407
    reference: chr 0
allele count: 121
allele frequency: 1.408745866902622e-3
allele num: 85892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.194-5C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.709-5C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.778-5C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.604-5C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.778-5C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.778-5C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29197
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 31
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2081
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  variant carriers: 1
hgvs: c.778-5C>T
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

X-153052412-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052412
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052412
    reference: chr 0
allele count: 2
allele frequency: 2.3288580444579e-5
allele num: 85879
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.778-10T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.778-10T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.778-10T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.604-10T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.709-10T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.194-10T>C
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD

X-153052417-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052417
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052417
    reference: chr 0
allele count: 1
allele frequency: 1.164930919596468e-5
allele num: 85842
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.778-15C>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.778-15C>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.778-15C>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.194-15C>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.709-15C>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.604-15C>A
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1147
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genotype quality: GenotypeQuality
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-153052420-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052420
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052420
    reference: chr 0
allele count: 10
allele frequency: 1.165433249810617e-4
allele num: 85805
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.778-18C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.778-18C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.194-18C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.778-18C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
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  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.709-18C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.604-18C>G
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 775
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-153052436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052436
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052436
    reference: chr 0
allele count: 2
allele frequency: 2.333994631812347e-5
allele num: 85690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.604-34C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.778-34C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.778-34C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.778-34C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.709-34C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.194-34C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-153052440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052440
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052440
    reference: chr 0
allele count: 1
allele frequency: 1.168674839599378e-5
allele num: 85567
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.778-38G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.778-38G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.778-38G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.194-38G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.604-38G>A
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.709-38G>A
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 105
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

X-153052441-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052441
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052441
    reference: chr 0
allele count: 147
allele frequency: 1.716948736816286e-3
allele num: 85617
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.778-39C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.778-39C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.778-39C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.604-39C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.194-39C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.709-39C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 7
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 7556
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153052447-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052447
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052447
    reference: chr 0
allele count: 1
allele frequency: 1.167651386002195e-5
allele num: 85642
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.778-45T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.709-45T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.194-45T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.604-45T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.778-45T>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.778-45T>C
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 64
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 27
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genotype depth: GenotypeDepth
  all individuals: 611
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 201
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 402
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 181
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 750
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genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-153052455-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052455
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052455
    reference: chr 0
allele count: 6
allele frequency: 7.005908316013171e-5
allele num: 85642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.777+51C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.603+51C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.708+51C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.193+51C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.777+51C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.777+51C>G
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13205
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 344
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

X-153052459-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052459
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052459
    reference: chr 0
allele count: 147
allele frequency: 1.716788321167883e-3
allele num: 85625
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.777+47T>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.708+47T>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.777+47T>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.777+47T>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.603+47T>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.193+47T>G
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 338
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  variant carriers: 1
num of homozygotes: 2
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

X-153052467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052467
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052467
    reference: chr 0
allele count: 47
allele frequency: 5.489307529694818e-4
allele num: 85621
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.603+39C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.193+39C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.777+39C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.777+39C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.777+39C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.708+39C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 13384
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29270
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
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genotype depth: GenotypeDepth
  all individuals: 1704
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genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 759
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7429
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

X-153052470-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052470
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052470
    reference: chr 0
allele count: 1
allele frequency: 1.167924131648408e-5
allele num: 85622
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.603+36G>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.777+36G>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.193+36G>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.777+36G>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.777+36G>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.708+36G>C
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13477
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 71
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genotype depth: GenotypeDepth
  all individuals: 582
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genotype depth: GenotypeDepth
  all individuals: 9953
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29338
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genotype depth: GenotypeDepth
  all individuals: 1691
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genotype depth: GenotypeDepth
  all individuals: 20
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genotype quality: GenotypeQuality
  all individuals: 212
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 200
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genotype quality: GenotypeQuality
  all individuals: 2374
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genotype quality: GenotypeQuality
  all individuals: 94
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 891
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

X-153052472-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052472
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052472
    reference: chr 0
allele count: 1
allele frequency: 1.168074196072934e-5
allele num: 85611
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.777+34G>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.708+34G>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.603+34G>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.777+34G>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.777+34G>C
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.193+34G>C
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7428
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
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genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 888
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genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-153052472-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052472
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052470
    reference: chr 0
allele count: 1
allele frequency: 1.168074196072934e-5
allele num: 85611
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.708+32_708+33delCT
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.193+32_193+33delCT
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.777+32_777+33delCT
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.777+32_777+33delCT
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.603+32_603+33delCT
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.777+32_777+33delCT
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29334
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7428
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 199
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genotype quality: GenotypeQuality
  all individuals: 723
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: CAG
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-153052474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052474
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052474
    reference: chr 0
allele count: 1
allele frequency: 1.166765841763216e-5
allele num: 85707
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.603+32C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.708+32C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.193+32C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.777+32C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.777+32C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.777+32C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7399
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

X-153052481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052481
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052481
    reference: chr 0
allele count: 1
allele frequency: 1.166112763104192e-5
allele num: 85755
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.708+25C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.777+25C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.777+25C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.603+25C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.193+25C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.777+25C>T
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9875
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
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genotype depth: GenotypeDepth
  all individuals: 6
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genotype depth: GenotypeDepth
  all individuals: 28
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
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genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
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genotype quality: GenotypeQuality
  all individuals: 7375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
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genotype quality: GenotypeQuality
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 878
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genotype quality: GenotypeQuality
  all individuals: 161
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 217
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genotype quality: GenotypeQuality
  all individuals: 1967
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genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-153052483-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052483
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052483
    reference: chr 0
allele count: 1
allele frequency: 1.165840862722238e-5
allele num: 85775
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.777+23C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.708+23C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.777+23C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.193+23C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.603+23C>G
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.777+23C>G
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9852
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13827
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7359
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41441
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

X-153052534-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052534
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052534
    reference: chr 0
allele count: 1
allele frequency: 1.157769210285622e-5
allele num: 86373
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.749A>G
  hgvsp: ENSP00000359110.3:p.Asn250Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.165A>G
  hgvsp: ENSP00000400115.1:p.Asn56Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.680A>G
  hgvsp: ENSP00000401862.1:p.Asn227Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.749A>G
  hgvsp: ENSP00000359111.1:p.Asn250Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.749A>G
  hgvsp: ENSP00000217901.5:p.Asn250Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.575A>G
  hgvsp: ENSP00000408529.2:p.Asn192Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000402747
  ensembl transcript: ENST00000444338
  gene symbol: IDH3G
  hgvsc: ENST00000444338.1:c.569A>G
  hgvsp: ENSP00000402747.1:p.Asn190Ser
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16628
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29574
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44553
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn250Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

X-153052539-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052539
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052539
    reference: chr 0
allele count: 4
allele frequency: 4.631291319802244e-5
allele num: 86369
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.744C>T
  hgvsp: ENST00000217901.5:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.675C>T
  hgvsp: ENST00000444450.1:c.675C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.744C>T
  hgvsp: ENST00000370092.3:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.570C>T
  hgvsp: ENST00000427365.2:c.570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.744C>T
  hgvsp: ENST00000370093.1:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.160C>T
  hgvsp: ENST00000454076.1:c.160C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000402747
  ensembl transcript: ENST00000444338
  gene symbol: IDH3G
  hgvsc: ENST00000444338.1:c.564C>T
  hgvsp: ENST00000444338.1:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe248Phe
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

X-153052543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052543
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052543
    reference: chr 0
allele count: 1
allele frequency: 1.158735124737836e-5
allele num: 86301
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.740C>T
  hgvsp: ENSP00000217901.5:p.Thr247Ile
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.740C>T
  hgvsp: ENSP00000359111.1:p.Thr247Ile
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.740C>T
  hgvsp: ENSP00000359110.3:p.Thr247Ile
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.156C>T
  hgvsp: ENSP00000400115.1:p.Thr53Ile
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.566C>T
  hgvsp: ENSP00000408529.2:p.Thr189Ile
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.671C>T
  hgvsp: ENSP00000401862.1:p.Thr224Ile
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000402747
  ensembl transcript: ENST00000444338
  gene symbol: IDH3G
  hgvsc: ENST00000444338.1:c.560C>T
  hgvsp: ENSP00000402747.1:p.Thr187Ile
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 27
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 286
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr247Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

X-153052553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052553
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052553
    reference: chr 0
allele count: 1
allele frequency: 1.163169403991997e-5
allele num: 85972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000402747
  ensembl transcript: ENST00000444338
  gene symbol: IDH3G
  hgvsc: ENST00000444338.1:c.550C>T
  hgvsp: ENSP00000402747.1:p.Pro184Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.730C>T
  hgvsp: ENSP00000359111.1:p.Pro244Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.661C>T
  hgvsp: ENSP00000401862.1:p.Pro221Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.730C>T
  hgvsp: ENSP00000217901.5:p.Pro244Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.730C>T
  hgvsp: ENSP00000359110.3:p.Pro244Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.146C>T
  hgvsp: ENSP00000400115.1:p.Pro50Ser
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.556C>T
  hgvsp: ENSP00000408529.2:p.Pro186Ser
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6960
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro244Ser
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

X-153052559-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052559
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052559
    reference: chr 0
allele count: 2
allele frequency: 2.333640596011808e-5
allele num: 85703
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.724C>T
  hgvsp: ENSP00000217901.5:p.Arg242Cys
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.550C>T
  hgvsp: ENSP00000408529.2:p.Arg184Cys
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.140C>T
  hgvsp: ENSP00000400115.1:p.Arg48Cys
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.724C>T
  hgvsp: ENSP00000359110.3:p.Arg242Cys
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.724C>T
  hgvsp: ENSP00000359111.1:p.Arg242Cys
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.655C>T
  hgvsp: ENSP00000401862.1:p.Arg219Cys
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000402747
  ensembl transcript: ENST00000444338
  gene symbol: IDH3G
  hgvsc: ENST00000444338.1:c.544C>T
  hgvsp: ENSP00000402747.1:p.Arg182Cys
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43649
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg242Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153052560-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052560
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052560
    reference: chr 0
allele count: 2
allele frequency: 2.334457763822908e-5
allele num: 85673
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.139C>T
  hgvsp: ENST00000454076.1:c.139C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.723C>T
  hgvsp: ENST00000370092.3:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.723C>T
  hgvsp: ENST00000370093.1:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.723C>T
  hgvsp: ENST00000217901.5:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.654C>T
  hgvsp: ENST00000444450.1:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000402747
  ensembl transcript: ENST00000444338
  gene symbol: IDH3G
  hgvsc: ENST00000444338.1:c.543C>T
  hgvsp: ENST00000444338.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.549C>T
  hgvsp: ENST00000427365.2:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala241Ala
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

X-153052582-TGGAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052582
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052578
    reference: chr 0
allele count: 1
allele frequency: 1.205821707202373e-5
allele num: 82931
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.697_700delCTCC
  hgvsp: ENSP00000359111.1:p.Leu233SerfsTer18
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.628_631delCTCC
  hgvsp: ENSP00000401862.1:p.Leu210SerfsTer18
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.697_700delCTCC
  hgvsp: ENSP00000359110.3:p.Leu233SerfsTer18
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.113_116delCTCC
  hgvsp: ENSP00000400115.1:p.Leu39SerfsTer18
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067829
  ensembl transcript: ENST00000497043
  gene symbol: IDH3G
  hgvsc: ENST00000497043.1:n.847_850delCTCC
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000402747
  ensembl transcript: ENST00000444338
  gene symbol: IDH3G
  hgvsc: ENST00000444338.1:c.517_520delCTCC
  hgvsp: ENSP00000402747.1:p.Leu173SerfsTer18
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.697_700delCTCC
  hgvsp: ENSP00000217901.5:p.Leu233SerfsTer18
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.523_526delCTCC
  hgvsp: ENSP00000408529.2:p.Leu175SerfsTer18
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5710
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu233SerfsTer18
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: TGGAG
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153052599-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052599
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153052599
    reference: chr 0
allele count: 7
allele frequency: 8.94854586129754e-5
allele num: 78225
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000400115
  ensembl transcript: ENST00000454076
  gene symbol: IDH3G
  hgvsc: ENST00000454076.1:c.100C>T
  hgvsp: ENST00000454076.1:c.100C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067829
  ensembl transcript: ENST00000497043
  gene symbol: IDH3G
  hgvsc: ENST00000497043.1:n.834C>T
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359111
  ensembl transcript: ENST00000370093
  gene symbol: IDH3G
  hgvsc: ENST00000370093.1:c.684C>T
  hgvsp: ENST00000370093.1:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000402747
  ensembl transcript: ENST00000444338
  gene symbol: IDH3G
  hgvsc: ENST00000444338.1:c.504C>T
  hgvsp: ENST00000444338.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000401862
  ensembl transcript: ENST00000444450
  gene symbol: IDH3G
  hgvsc: ENST00000444450.1:c.615C>T
  hgvsp: ENST00000444450.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000217901
  ensembl transcript: ENST00000217901
  gene symbol: IDH3G
  hgvsc: ENST00000217901.5:c.684C>T
  hgvsp: ENST00000217901.5:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000408529
  ensembl transcript: ENST00000427365
  gene symbol: IDH3G
  hgvsc: ENST00000427365.2:c.510C>T
  hgvsp: ENST00000427365.2:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067829
  ensembl protein: ENSP00000359110
  ensembl transcript: ENST00000370092
  gene symbol: IDH3G
  hgvsc: ENST00000370092.3:c.684C>T
  hgvsp: ENST00000370092.3:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5386
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11831
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly228Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-153052602-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153052602
allele count: 7
allele frequency: 9.051060913639948e-5
allele num: 77339
alternate allele: A
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Leu227Leu
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18565
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2409
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.212121212121212e-3
allele num: 4950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 417
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33551
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6361
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.783e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.668e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 2.301e1

FS
type: SiteQuality
SIO_000300: 2.808e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.45e-1

DP
type: SiteQuality
SIO_000300: 1.055185e6

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

GenotypeQuality
all individuals: 490
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4500
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4735
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.123926150385805e-5
allele num: 32011
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7219
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6465
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.427e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e0

QD
type: SiteQuality
SIO_000300: 1.543e1

FS
type: SiteQuality
SIO_000300: 9.55e-1

DP
type: SiteQuality
SIO_000300: 1.007914e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.47e-1

GenotypeQuality
all individuals: 1857
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2079
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4735
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6465
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7219
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.123926150385805e-5
allele num: 32011
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.427e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.57e-1

FS
type: SiteQuality
SIO_000300: 9.55e-1

DP
type: SiteQuality
SIO_000300: 1.007914e6

QD
type: SiteQuality
SIO_000300: 1.543e1

GenotypeQuality
all individuals: 310
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1081
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16407
bin: 6.25e1
variant carriers: 2

East Asian
type: Population
allele count: 54
allele frequency: 1.140925417282907e-2
allele num: 4733
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6465
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 399
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32035
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2239
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

QD
type: SiteQuality
SIO_000300: 1.655e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.343e0

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

DP
type: SiteQuality
SIO_000300: 1.00711e6

GenotypeQuality
all individuals: 280
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1864
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14898
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2093
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7120
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 7.127583749109052e-4
allele num: 5612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.796238244514106e-5
allele num: 30624
num of homozygotes: 0

African
type: Population
allele count: 61
allele frequency: 9.661070636680393e-3
allele num: 6314
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.193944712593243e-4
allele num: 4558
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

QD
type: SiteQuality
SIO_000300: 1.623e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

DP
type: SiteQuality
SIO_000300: 9.74355e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7093
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6223
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30281
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5517
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.592e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

DP
type: SiteQuality
SIO_000300: 9.64773e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.807e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.44e-1

GenotypeQuality
all individuals: 8126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27951
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5851
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1767
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6767
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.641660597232338e-5
allele num: 27460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4132
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.74e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.252e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.349e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.959e1

MQRankSum
type: SiteQuality
SIO_000300: -1.038e0

DP
type: SiteQuality
SIO_000300: 8.84917e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
all individuals: 2248
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13552
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7249
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1938
bin: 3.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23297
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3602
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.608492842206852e-3
allele num: 6217
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4049
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.903311762466692e-4
allele num: 5254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1369
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.41e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

QD
type: SiteQuality
SIO_000300: 1.675e1

DP
type: SiteQuality
SIO_000300: 7.67151e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

GenotypeQuality
all individuals: 2520
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4713
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3185
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1042
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.122241086587436e-4
allele num: 4712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19874
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

FS
type: SiteQuality
SIO_000300: 1.3744e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.54e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 6.88872e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.15e-1

QD
type: SiteQuality
SIO_000300: 2.092e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.171e0

GenotypeQuality
all individuals: 429
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4307
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2561
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 841
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 251
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.244e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.83e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 6.47123e5

FS
type: SiteQuality
SIO_000300: 1.2022e1

QD
type: SiteQuality
SIO_000300: 2.34e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.054e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 337
bin: 7.25e1
variant carriers: 243

GenotypeQuality
all individuals: 695
bin: 6.75e1
variant carriers: 445

GenotypeQuality
all individuals: 434
bin: 7.75e1
variant carriers: 316

GenotypeQuality
all individuals: 468
bin: 8.25e1
variant carriers: 342

GenotypeQuality
all individuals: 526
bin: 4.75e1
variant carriers: 500

GenotypeQuality
all individuals: 404
bin: 8.75e1
variant carriers: 357

Latino
type: Population
allele count: 1249
allele frequency: 5.933491686460808e-1
allele num: 2105
num of homozygotes: 314

African
type: Population
allele count: 1490
allele frequency: 3.73153017781117e-1
allele num: 3993
num of homozygotes: 210

South Asian
type: Population
allele count: 3452
allele frequency: 6.546557936658449e-1
allele num: 5273
num of homozygotes: 519

European (Finnish)
type: Population
allele count: 308
allele frequency: 4.173441734417344e-1
allele num: 738
num of homozygotes: 45

Other
type: Population
allele count: 102
allele frequency: 4.657534246575342e-1
allele num: 219
num of homozygotes: 15

East Asian
type: Population
allele count: 1532
allele frequency: 6.232709519934907e-1
allele num: 2458
num of homozygotes: 403

European (Non-Finnish)
type: Population
allele count: 5221
allele frequency: 3.359933071626231e-1
allele num: 15539
num of homozygotes: 588

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

QD
type: SiteQuality
SIO_000300: 2.233e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.18795e5

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 185
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11656
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.055498458376156e-3
allele num: 973
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3958
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.679e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.88446e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

FS
type: SiteQuality
SIO_000300: 5.493e0

QD
type: SiteQuality
SIO_000300: 1.167e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeQuality
all individuals: 143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.364737550471063e-4
allele num: 2972
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.483679525222552e-3
allele num: 674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.13e-1

FS
type: SiteQuality
SIO_000300: 6.224e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.487e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.98e-2

QD
type: SiteQuality
SIO_000300: 2.242e1

DP
type: SiteQuality
SIO_000300: 5.50474e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 2597
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2883
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1141
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.41609e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.15e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2861
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 259
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.624e0

DP
type: SiteQuality
SIO_000300: 5.36856e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.17e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.758e1

MQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7923
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2967
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2591
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 431
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7921
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.98817e5

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.84e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.031e1

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.41643059490085e-3
allele num: 706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 105
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 365
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2485
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7289
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2669
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.099999999999999e-2

DP
type: SiteQuality
SIO_000300: 4.78671e5

VQSLOD
type: SiteQuality
SIO_000300: -2.049e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.435e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 663
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 99
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7161
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 127
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.263e0

MQRankSum
type: SiteQuality
SIO_000300: -1.067e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.16e-2

DP
type: SiteQuality
SIO_000300: 4.72871e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.065e1

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 309
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 4.543389368468878e-4
allele num: 2201
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.62467e5

QD
type: SiteQuality
SIO_000300: 1.838e1

VQSLOD
type: SiteQuality
SIO_000300: -1.785e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.679999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.51e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 313
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517680983457277e-4
allele num: 6589
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 107
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2217
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 4.62634e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.63e0

FS
type: SiteQuality
SIO_000300: 2.539e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.64e-2

QD
type: SiteQuality
SIO_000300: 1.9e1

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7360
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8043
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45435
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.6103500761035e-4
allele num: 6570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7355
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 1.56314e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.101e0

QD
type: SiteQuality
SIO_000300: 1.199e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7387
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.200607367633467e-5
allele num: 45442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.562902e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

QD
type: SiteQuality
SIO_000300: 3.047e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.709e0

VQSLOD
type: SiteQuality
SIO_000300: -1.562e0

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

FS
type: SiteQuality
SIO_000300: 2.136e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9259
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8037
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.200558941971261e-5
allele num: 45443
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: -4.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.69e-1

FS
type: SiteQuality
SIO_000300: 1.644e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

DP
type: SiteQuality
SIO_000300: 1.563061e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9259
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6567
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45422
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.060638873849486e-4
allele num: 7388
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.38e-1

DP
type: SiteQuality
SIO_000300: 1.563527e6

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

FS
type: SiteQuality
SIO_000300: 3.023e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7202
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GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9253
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.546175424646036e-4
allele num: 45273
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.566541e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.739e0

FS
type: SiteQuality
SIO_000300: 4.077e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.48e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.04e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeQuality
all individuals: 2015
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7255
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 341
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8037
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.406451044328897e-5
allele num: 45388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.624e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.821e1

DP
type: SiteQuality
SIO_000300: 1.566716e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 842
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7325
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.194907813871818e-5
allele num: 45560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7603
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 2.352e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.169e0

MQRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.379e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.574689e6

VQSLOD
type: SiteQuality
SIO_000300: 8.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-2

GenotypeQuality
all individuals: 199
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1028
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 38179
bin: 6.25e1
variant carriers: 1

African
type: Population
allele count: 10
allele frequency: 1.234263144902493e-3
allele num: 8102
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 3.264986287057594e-3
allele num: 7657
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.21141088014153e-4
allele num: 4522
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.697792869269949e-3
allele num: 589
num of homozygotes: 0

East Asian
type: Population
allele count: 166
allele frequency: 2.528945764777575e-2
allele num: 6564
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 4.387504387504388e-4
allele num: 45584
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

FS
type: SiteQuality
SIO_000300: 2.868e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

DP
type: SiteQuality
SIO_000300: 1.581684e6

VQSLOD
type: SiteQuality
SIO_000300: 9.08e0

QD
type: SiteQuality
SIO_000300: 1.647e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.602e-1

GenotypeQuality
all individuals: 395
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.389622931390193e-5
allele num: 45562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.522997258604935e-4
allele num: 6566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7641
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.112e0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.143e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.937e0

DP
type: SiteQuality
SIO_000300: 1.570941e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.652e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.095554240890467e-4
allele num: 45639
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.290822253775655e-4
allele num: 7747
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

DP
type: SiteQuality
SIO_000300: 1.573044e6

FS
type: SiteQuality
SIO_000300: 6.485e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: -1.728e0

QD
type: SiteQuality
SIO_000300: 2.504e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.98e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

GenotypeQuality
all individuals: 3889
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6569
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.190244650327442e-5
allele num: 45657
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

DP
type: SiteQuality
SIO_000300: 1.573788e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.363e0

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2067
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7471
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.178079804844049e-5
allele num: 45912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8193
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.64e-1

DP
type: SiteQuality
SIO_000300: 1.587835e6

VQSLOD
type: SiteQuality
SIO_000300: 4.57e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

FS
type: SiteQuality
SIO_000300: 1.0217e1

MQ
type: SiteQuality
SIO_000300: 5.544e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.493e0

MQRankSum
type: SiteQuality
SIO_000300: -3.795e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

GenotypeQuality
all individuals: 2761
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7581
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.518372304889159e-4
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8881
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.74e-1

FS
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.23e0

DP
type: SiteQuality
SIO_000300: 1.612619e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.83e-1

GenotypeQuality
all individuals: 2450
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41527
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8257
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.30737422467264e-5
allele num: 46432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6589
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9283
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9129
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

FS
type: SiteQuality
SIO_000300: 5.322e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.45e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

QD
type: SiteQuality
SIO_000300: 1.657e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.44e-1

DP
type: SiteQuality
SIO_000300: 1.619966e6

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.14938205265986e-5
allele num: 46525
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.208968411751712e-4
allele num: 4527
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8265
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -2.929e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 1.623888e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.48e-2

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 3.157e1

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
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variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9285
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.591065292096221e-5
allele num: 46560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.208968411751712e-4
allele num: 4527
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

DP
type: SiteQuality
SIO_000300: 1.6264e6

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

FS
type: SiteQuality
SIO_000300: 5.570000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.64e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.48e-1

QD
type: SiteQuality
SIO_000300: 1.67e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.539951573849879e-4
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8359
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10005
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47161
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.605136436597111e-3
allele num: 623
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.469e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.867e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-2

QD
type: SiteQuality
SIO_000300: 1.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

DP
type: SiteQuality
SIO_000300: 1.648671e6

MQ
type: SiteQuality
SIO_000300: 5.926e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 362
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1040
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8361
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47159
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.9930048965724e-5
allele num: 10007
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.141e0

DP
type: SiteQuality
SIO_000300: 1.6489e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

QD
type: SiteQuality
SIO_000300: 1.363e1

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43981
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7869
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8379
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.115909523708766e-5
allele num: 47261
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 1.65235e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

FS
type: SiteQuality
SIO_000300: 5.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 2.036e1

MQ
type: SiteQuality
SIO_000300: 6.017e1

GenotypeQuality
all individuals: 146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7866
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2122
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.51148730350665e-4
allele num: 6616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47291
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.005e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.012e0

QD
type: SiteQuality
SIO_000300: 2.942e1

MQRankSum
type: SiteQuality
SIO_000300: -1.313e0

DP
type: SiteQuality
SIO_000300: 1.653099e6

GenotypeQuality
all individuals: 364
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 787
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44113
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7864
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8387
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10053
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.114030822569393e-5
allele num: 47303
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 1.044e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.742e1

VQSLOD
type: SiteQuality
SIO_000300: -9.556e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.487e0

DP
type: SiteQuality
SIO_000300: 1.653594e6

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1040
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.219142248380904e-5
allele num: 47403
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.743270484999407e-4
allele num: 8433
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.989653800238758e-4
allele num: 10052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.52e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.656594e6

QD
type: SiteQuality
SIO_000300: 1.392e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.39e-1

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7882
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44293
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
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variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.219231256065145e-5
allele num: 47402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8435
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.05e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.82e-2

FS
type: SiteQuality
SIO_000300: 2.891e0

DP
type: SiteQuality
SIO_000300: 1.655645e6

QD
type: SiteQuality
SIO_000300: 2.165e1

VQSLOD
type: SiteQuality
SIO_000300: -1.969e0

MQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

GenotypeQuality
all individuals: 377
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
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GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.986019572598362e-5
allele num: 10014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.830000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.65325e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.662e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

GenotypeQuality
all individuals: 1032
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 365
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8429
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.111129876710015e-5
allele num: 47368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.346e1

FS
type: SiteQuality
SIO_000300: 2.294e0

MQRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.841e0

DP
type: SiteQuality
SIO_000300: 1.646166e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47203
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.190334483990001e-4
allele num: 8401
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9593
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.25e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e0

VQSLOD
type: SiteQuality
SIO_000300: -2.383e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

QD
type: SiteQuality
SIO_000300: 2.581e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-1

DP
type: SiteQuality
SIO_000300: 1.625395e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e-2

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.190051172200405e-4
allele num: 8403
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9479
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.445e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 8.047000000000001e0

DP
type: SiteQuality
SIO_000300: 1.618395e6

MQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

MQ
type: SiteQuality
SIO_000300: 5.776e1

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

GenotypeQuality
all individuals: 132
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40451
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.368074718743367e-5
allele num: 47110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9337
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

VQSLOD
type: SiteQuality
SIO_000300: -1.389e0

FS
type: SiteQuality
SIO_000300: 2.608e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.29e-2

DP
type: SiteQuality
SIO_000300: 1.614218e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

QD
type: SiteQuality
SIO_000300: 2.047e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

GenotypeQuality
all individuals: 40181
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 800
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 3

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2120
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
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variant carriers: 0

GenotypeQuality
all individuals: 1018
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variant carriers: 2

GenotypeQuality
all individuals: 372
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.628664495114007e-3
allele num: 614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 16
allele frequency: 3.541389995573263e-3
allele num: 4518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8395
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.377500537750054e-4
allele num: 9298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 80
allele frequency: 1.698730199176116e-3
allele num: 47094
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 2.031868249385092e-3
allele num: 9351
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 2.587e0

QD
type: SiteQuality
SIO_000300: 1.825e1

DP
type: SiteQuality
SIO_000300: 1.616383e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.392e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 7.8e0

GenotypeQuality
all individuals: 2083
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2489
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.245383145828911e-5
allele num: 47110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

QD
type: SiteQuality
SIO_000300: 2.228e1

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

DP
type: SiteQuality
SIO_000300: 1.606789e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: -1.328e0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40556
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8407
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.080613788631943e-4
allele num: 9254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47128
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -2.201e0

VQSLOD
type: SiteQuality
SIO_000300: -1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.592e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 5.964e0

DP
type: SiteQuality
SIO_000300: 1.606012e6

QD
type: SiteQuality
SIO_000300: 1.365e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.52e-1

GenotypeQuality
all individuals: 7591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
all individuals: 40246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.189484953015344e-3
allele num: 8407
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9293
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47123
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.605032e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.111e0

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

FS
type: SiteQuality
SIO_000300: 5.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.312e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
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variant carriers: 0

GenotypeQuality
all individuals: 2118
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variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.122060945590357e-5
allele num: 47124
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.186521120075937e-4
allele num: 8428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

DP
type: SiteQuality
SIO_000300: 1.602285e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.619e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 1.2378e1

VQSLOD
type: SiteQuality
SIO_000300: -1.147e0

QD
type: SiteQuality
SIO_000300: 1.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
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variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 7.25e1
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GenotypeQuality
all individuals: 1132
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4509
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9027
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.124269782262347e-5
allele num: 47075
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8431
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.524e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 1.602281e6

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 2.876e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.68e0

QD
type: SiteQuality
SIO_000300: 2.782e1

GenotypeQuality
all individuals: 2062
bin: 7.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 9.75e1
variant carriers: 136

GenotypeQuality
all individuals: 767
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variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40384
bin: 6.25e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9043
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.278688524590164e-3
allele num: 610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8433
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 132
allele frequency: 2.802428771602055e-3
allele num: 47102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 13
allele frequency: 2.883762200532387e-3
allele num: 4508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.142e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.825e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

DP
type: SiteQuality
SIO_000300: 1.604007e6

QD
type: SiteQuality
SIO_000300: 1.999e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
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variant carriers: 0

GenotypeQuality
all individuals: 40729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4507
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8441
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.509433962264151e-4
allele num: 6625
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9047
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.935e1

MQRankSum
type: SiteQuality
SIO_000300: -1.198e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.1e-2

QD
type: SiteQuality
SIO_000300: 1.308e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e-1

DP
type: SiteQuality
SIO_000300: 1.595699e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2092
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variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2052
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.220248667850799e-4
allele num: 4504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8449
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.060355431140518e-4
allele num: 47154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.103e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

DP
type: SiteQuality
SIO_000300: 1.594393e6

QD
type: SiteQuality
SIO_000300: 2.234e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 9.75e1
variant carriers: 131

GenotypeQuality
all individuals: 40559
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 806
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 1

Latino
type: Population
allele count: 5
allele frequency: 5.380972879896685e-4
allele num: 9292
num of homozygotes: 0

African
type: Population
allele count: 139
allele frequency: 1.645359848484848e-2
allele num: 8448
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.120935756855925e-5
allele num: 47149
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.221728504776716e-4
allele num: 9002
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.349e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

QD
type: SiteQuality
SIO_000300: 1.734e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

DP
type: SiteQuality
SIO_000300: 1.59612e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.428e0

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeQuality
all individuals: 255
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2050
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 9.75e1
variant carriers: 40

GenotypeQuality
all individuals: 782
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 337
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 6.457167455876022e-4
allele num: 9292
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.633986928104575e-3
allele num: 612
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.331852509995558e-4
allele num: 9004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.449388209121246e-4
allele num: 4495
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.183572020357439e-4
allele num: 8449
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 7.211181573310144e-4
allele num: 47149
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.967e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

DP
type: SiteQuality
SIO_000300: 1.589268e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.353e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.25e0

QD
type: SiteQuality
SIO_000300: 1.891e1

GenotypeQuality
all individuals: 960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7453
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.510802235987309e-4
allele num: 6619
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9007
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.14e-1

FS
type: SiteQuality
SIO_000300: 7.224e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.194e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 3.421e1

MQ
type: SiteQuality
SIO_000300: 5.915e1

DP
type: SiteQuality
SIO_000300: 1.587596e6

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9001
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.511030522816561e-4
allele num: 6618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.147e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

QD
type: SiteQuality
SIO_000300: 2.52e1

DP
type: SiteQuality
SIO_000300: 1.587788e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 166
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9001
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.121250689406474e-5
allele num: 47142
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
type: SiteQuality
SIO_000300: 2.147e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 1.587788e6

QD
type: SiteQuality
SIO_000300: 2.52e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

GenotypeQuality
all individuals: 150
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.183151916706105e-4
allele num: 8452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47193
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

FS
type: SiteQuality
SIO_000300: 5.677e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.215e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

DP
type: SiteQuality
SIO_000300: 1.587462e6

QD
type: SiteQuality
SIO_000300: 1.031e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
all individuals: 757
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41479
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4485
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.182732111176818e-4
allele num: 8455
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.587906e6

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

QD
type: SiteQuality
SIO_000300: 3.105e1

GenotypeQuality
all individuals: 877
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.101079057476327e-4
allele num: 9082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8461
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47221
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4483
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-2

DP
type: SiteQuality
SIO_000300: 1.587627e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

FS
type: SiteQuality
SIO_000300: 1.356e0

QD
type: SiteQuality
SIO_000300: 1.432e1

GenotypeQuality
all individuals: 240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7197
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4393
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8461
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9289
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.1134499957731e-5
allele num: 47316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9695
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.059e0

DP
type: SiteQuality
SIO_000300: 1.605379e6

VQSLOD
type: SiteQuality
SIO_000300: -3.911e0

FS
type: SiteQuality
SIO_000300: 1.9506e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.544e1

GenotypeQuality
all individuals: 1872
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.114299004165169e-5
allele num: 47297
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.364625206904706e-4
allele num: 8458
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9733
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.785e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.133e-1

QD
type: SiteQuality
SIO_000300: 1.754e1

DP
type: SiteQuality
SIO_000300: 1.604978e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.13e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 44772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7103
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.116178182202941e-5
allele num: 47255
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9741
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4353
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e0

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.111e0

DP
type: SiteQuality
SIO_000300: 1.601351e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.924e1

QD
type: SiteQuality
SIO_000300: 1.099e1

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9255
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.18595825426945e-4
allele num: 8432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47055
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6583
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4301
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.088e0

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

QD
type: SiteQuality
SIO_000300: 1.3e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 1.588779e6

GenotypeQuality
all individuals: 229
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9235
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.029760065904644e-4
allele num: 9711
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8421
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.13196887325445e-5
allele num: 46905
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6575
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.987e0

VQSLOD
type: SiteQuality
SIO_000300: -7.556e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.329e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.577461e6

QD
type: SiteQuality
SIO_000300: 1.288e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
all individuals: 1736
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6793
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9233
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.265210808044188e-5
allele num: 46891
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.683e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

FS
type: SiteQuality
SIO_000300: 2.726e0

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.004e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

DP
type: SiteQuality
SIO_000300: 1.575149e6

GenotypeQuality
all individuals: 515
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38814
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7500
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8265
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9015
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.202788730532855e-5
allele num: 45397
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6423
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.649e0

QD
type: SiteQuality
SIO_000300: 4.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.668e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.474571e6

VQSLOD
type: SiteQuality
SIO_000300: -2.703e-1

MQ
type: SiteQuality
SIO_000300: 5.667e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.157e0

GenotypeQuality
all individuals: 364
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4101
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29412
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3632
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.633186346562143e-4
allele num: 6123
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.349726520499275e-5
allele num: 42782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8597
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.330187580100198e-4
allele num: 8583
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.678e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 2.353e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.286055e6

QD
type: SiteQuality
SIO_000300: 1.204e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2