19-3546290-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546290
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546290
    reference: chr 19
allele count: 1
allele frequency: 1.027263575288147e-5
allele num: 97346
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1638G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1157C>G
  hgvsp: ENSP00000374046.2:p.Ser386Trp
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.194C>G
  hgvsp: ENSP00000467635.1:p.Ser65Trp
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1157C>G
  hgvsp: ENSP00000381566.3:p.Ser386Trp
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-124C>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1157C>G
  hgvsp: ENSP00000347583.1:p.Ser386Trp
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1130C>G
  hgvsp: ENSP00000467207.1:p.Ser377Trp
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10111
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15978
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21251
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser386Trp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

19-3546291-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546291
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546291
    reference: chr 19
allele count: 1
allele frequency: 1.025094308676398e-5
allele num: 97552
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1156T>C
  hgvsp: ENSP00000347583.1:p.Ser386Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1639A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1156T>C
  hgvsp: ENSP00000374046.2:p.Ser386Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1129T>C
  hgvsp: ENSP00000467207.1:p.Ser377Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1156T>C
  hgvsp: ENSP00000381566.3:p.Ser386Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.193T>C
  hgvsp: ENSP00000467635.1:p.Ser65Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-125T>C
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser386Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

19-3546295-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546295
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546295
    reference: chr 19
allele count: 1
allele frequency: 1.032417922775139e-5
allele num: 96860
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1125C>G
  hgvsp: ENST00000588918.1:c.1125C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1152C>G
  hgvsp: ENST00000398558.4:c.1152C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1152C>G
  hgvsp: ENST00000389395.3:c.1152C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1643G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.189C>G
  hgvsp: ENST00000589063.1:c.189C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-129C>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1152C>G
  hgvsp: ENST00000355415.2:c.1152C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4025
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21353
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3744
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val384Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

19-3546297-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546297
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546297
    reference: chr 19
allele count: 14
allele frequency: 1.449065352847413e-4
allele num: 96614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1150G>A
  hgvsp: ENSP00000347583.1:p.Val384Ile
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.187G>A
  hgvsp: ENSP00000467635.1:p.Val63Ile
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1123G>A
  hgvsp: ENSP00000467207.1:p.Val375Ile
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1150G>A
  hgvsp: ENSP00000374046.2:p.Val384Ile
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1645C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1150G>A
  hgvsp: ENSP00000381566.3:p.Val384Ile
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-131G>A
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9847
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15997
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13596
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9758
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4023
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val384Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

19-3546298-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546298
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546298
    reference: chr 19
allele count: 7
allele frequency: 7.276356000914742e-5
allele num: 96202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-132C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1646G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1149C>T
  hgvsp: ENST00000355415.2:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1149C>T
  hgvsp: ENST00000389395.3:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1149C>T
  hgvsp: ENST00000398558.4:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1122C>T
  hgvsp: ENST00000588918.1:c.1122C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.186C>T
  hgvsp: ENST00000589063.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15586
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13700
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5942
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9942
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4069
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu383Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

19-3546300-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546300
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546300
    reference: chr 19
allele count: 1
allele frequency: 1.03868046034318e-5
allele num: 96276
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1648G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.184C>T
  hgvsp: ENSP00000467635.1:p.Leu62Phe
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1120C>T
  hgvsp: ENSP00000467207.1:p.Leu374Phe
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1147C>T
  hgvsp: ENSP00000347583.1:p.Leu383Phe
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-134C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1147C>T
  hgvsp: ENSP00000374046.2:p.Leu383Phe
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1147C>T
  hgvsp: ENSP00000381566.3:p.Leu383Phe
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16731
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4072
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu383Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

19-3546303-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546303
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546303
    reference: chr 19
allele count: 56
allele frequency: 5.839659631267206e-4
allele num: 95896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1144A>G
  hgvsp: ENSP00000374046.2:p.Ile382Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.181A>G
  hgvsp: ENSP00000467635.1:p.Ile61Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1651T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1117A>G
  hgvsp: ENSP00000467207.1:p.Ile373Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1144A>G
  hgvsp: ENSP00000347583.1:p.Ile382Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-137A>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1144A>G
  hgvsp: ENSP00000381566.3:p.Ile382Val
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10204
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14850
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 13994
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16906
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20343
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Ile382Val
num of homozygotes: 1
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

19-3546304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546304
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546304
    reference: chr 19
allele count: 5
allele frequency: 5.229687892226592e-5
allele num: 95608
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1143C>T
  hgvsp: ENST00000398558.4:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.180C>T
  hgvsp: ENST00000589063.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1116C>T
  hgvsp: ENST00000588918.1:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1143C>T
  hgvsp: ENST00000389395.3:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-138C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1652G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1143C>T
  hgvsp: ENST00000355415.2:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14003
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14695
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr381Thr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-3546308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546308
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546308
    reference: chr 19
allele count: 1
allele frequency: 1.060422896651184e-5
allele num: 94302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.176C>T
  hgvsp: ENSP00000467635.1:p.Ala59Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1139C>T
  hgvsp: ENSP00000347583.1:p.Ala380Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1139C>T
  hgvsp: ENSP00000381566.3:p.Ala380Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1112C>T
  hgvsp: ENSP00000467207.1:p.Ala371Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1139C>T
  hgvsp: ENSP00000374046.2:p.Ala380Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-142C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1656G>A
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16663
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16955
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4616
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala380Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

19-3546308-GCACAGCCAGCACCCAGCAGCACAGCCGCTGCGTA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546308
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546274
    reference: chr 19
allele count: 1
allele frequency: 1.060422896651184e-5
allele num: 94302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsp: ENSP00000467635.1:p.Tyr48ProfsTer10
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsp: ENSP00000467207.1:p.Tyr360ProfsTer10
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsp: ENSP00000347583.1:p.Tyr369ProfsTer10
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsp: ENSP00000381566.3:p.Tyr369ProfsTer10
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsp: ENSP00000374046.2:p.Tyr369ProfsTer10
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9090
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4616
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr369ProfsTer10
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: GCACAGCCAGCACCCAGCAGCACAGCCGCTGCGTA
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

19-3546313-GCCAGCAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546313
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546306
    reference: chr 19
allele count: 2
allele frequency: 2.124314908442027e-5
allele num: 94148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1127_1133delGTGCTGG
  hgvsp: ENSP00000347583.1:p.Gly376AlafsTer12
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.164_170delGTGCTGG
  hgvsp: ENSP00000467635.1:p.Gly55AlafsTer12
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1100_1106delGTGCTGG
  hgvsp: ENSP00000467207.1:p.Gly367AlafsTer12
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1127_1133delGTGCTGG
  hgvsp: ENSP00000374046.2:p.Gly376AlafsTer12
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1127_1133delGTGCTGG
  hgvsp: ENSP00000381566.3:p.Gly376AlafsTer12
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4618
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17599
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly376AlafsTer12
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: GCCAGCAC
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-3546331-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546331
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546331
    reference: chr 19
allele count: 136
allele frequency: 1.496314225987457e-3
allele num: 90890
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1116T>G
  hgvsp: ENST00000398558.4:c.1116T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1089T>G
  hgvsp: ENST00000588918.1:c.1089T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.153T>G
  hgvsp: ENST00000589063.1:c.153T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-165T>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1679A>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1116T>G
  hgvsp: ENST00000389395.3:c.1116T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1116T>G
  hgvsp: ENST00000355415.2:c.1116T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7507
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11381
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9000
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12179
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 14669
  bin: 1.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3648
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala372Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

19-3546334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546334
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546334
    reference: chr 19
allele count: 11
allele frequency: 1.218161683277962e-4
allele num: 90300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1086G>A
  hgvsp: ENST00000588918.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-168G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1113G>A
  hgvsp: ENST00000389395.3:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1113G>A
  hgvsp: ENST00000355415.2:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1113G>A
  hgvsp: ENST00000398558.4:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1682C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.150G>A
  hgvsp: ENST00000589063.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11544
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8895
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14512
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4973
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala371Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

19-3546335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546335
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546335
    reference: chr 19
allele count: 33
allele frequency: 3.673442126589042e-4
allele num: 89834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1112C>T
  hgvsp: ENSP00000347583.1:p.Ala371Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1112C>T
  hgvsp: ENSP00000381566.3:p.Ala371Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1112C>T
  hgvsp: ENSP00000374046.2:p.Ala371Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1683G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.149C>T
  hgvsp: ENSP00000467635.1:p.Ala50Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1085C>T
  hgvsp: ENSP00000467207.1:p.Ala362Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-169C>T
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12440
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7430
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11679
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8776
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14443
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3542
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13989
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4879
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 9.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 18504
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala371Val
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

19-3546338-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546338
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546338
    reference: chr 19
allele count: 3
allele frequency: 3.33889816360601e-5
allele num: 89850
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1109C>T
  hgvsp: ENSP00000381566.3:p.Ala370Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1686G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.146C>T
  hgvsp: ENSP00000467635.1:p.Ala49Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-172C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1082C>T
  hgvsp: ENSP00000467207.1:p.Ala361Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1109C>T
  hgvsp: ENSP00000374046.2:p.Ala370Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1109C>T
  hgvsp: ENSP00000347583.1:p.Ala370Val
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14399
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13439
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3553
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4897
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala370Val
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-3546338-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546338
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546338
    reference: chr 19
allele count: 19
allele frequency: 2.11463550361714e-4
allele num: 89850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1082C>A
  hgvsp: ENSP00000467207.1:p.Ala361Glu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1109C>A
  hgvsp: ENSP00000347583.1:p.Ala370Glu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-172C>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1109C>A
  hgvsp: ENSP00000374046.2:p.Ala370Glu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1686G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.146C>A
  hgvsp: ENSP00000467635.1:p.Ala49Glu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1109C>A
  hgvsp: ENSP00000381566.3:p.Ala370Glu
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11792
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12646
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14399
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3553
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala370Glu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

19-3546339-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546339
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546339
    reference: chr 19
allele count: 2
allele frequency: 2.233389168062535e-5
allele num: 89550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1108G>A
  hgvsp: ENSP00000347583.1:p.Ala370Thr
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1687C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1108G>A
  hgvsp: ENSP00000374046.2:p.Ala370Thr
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1108G>A
  hgvsp: ENSP00000381566.3:p.Ala370Thr
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1081G>A
  hgvsp: ENSP00000467207.1:p.Ala361Thr
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-173G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.145G>A
  hgvsp: ENSP00000467635.1:p.Ala49Thr
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14341
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala370Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

19-3546340-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546340
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546340
    reference: chr 19
allele count: 18124
allele frequency: 2.010337866317634e-1
allele num: 90154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1080C>T
  hgvsp: ENST00000588918.1:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1107C>T
  hgvsp: ENST00000389395.3:c.1107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1107C>T
  hgvsp: ENST00000355415.2:c.1107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1688G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.144C>T
  hgvsp: ENST00000589063.1:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-174C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1107C>T
  hgvsp: ENST00000398558.4:c.1107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 2.5e0
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 9505
  bin: 1.75e1
  variant carriers: 4197
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 13559
  bin: 1.25e1
  variant carriers: 3313
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.75e1
  variant carriers: 490
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 11966
  bin: 7.5e0
  variant carriers: 1340
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 2.25e1
  variant carriers: 3307
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 2.75e1
  variant carriers: 1773
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 3.25e1
  variant carriers: 918
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.75e1
  variant carriers: 446
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 9.25e1
  variant carriers: 229
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 236
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 1.25e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 6.75e1
  variant carriers: 229
genotype quality: GenotypeQuality
  all individuals: 15246
  bin: 2.25e1
  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 2.5e0
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 4.25e1
  variant carriers: 145
genotype quality: GenotypeQuality
  all individuals: 10454
  bin: 6.25e1
  variant carriers: 248
hgvs: p.Tyr369Tyr
num of homozygotes: 1761
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

19-3546345-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546345
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546345
    reference: chr 19
allele count: 1
allele frequency: 1.166126361452527e-5
allele num: 85754
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1693C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.139G>C
  hgvsp: ENSP00000467635.1:p.Val47Leu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1102G>C
  hgvsp: ENSP00000347583.1:p.Val368Leu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-179G>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1102G>C
  hgvsp: ENSP00000381566.3:p.Val368Leu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1075G>C
  hgvsp: ENSP00000467207.1:p.Val359Leu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1102G>C
  hgvsp: ENSP00000374046.2:p.Val368Leu
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20637
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val368Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

19-3546345-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546345
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546345
    reference: chr 19
allele count: 91
allele frequency: 1.061174988921799e-3
allele num: 85754
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1102G>A
  hgvsp: ENSP00000381566.3:p.Val368Met
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.139G>A
  hgvsp: ENSP00000467635.1:p.Val47Met
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-179G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1102G>A
  hgvsp: ENSP00000374046.2:p.Val368Met
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1075G>A
  hgvsp: ENSP00000467207.1:p.Val359Met
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1102G>A
  hgvsp: ENSP00000347583.1:p.Val368Met
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1693C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14201
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 14545
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11309
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14496
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 9.75e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Val368Met
num of homozygotes: 1
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-3546346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546346
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546346
    reference: chr 19
allele count: 20
allele frequency: 2.332252722905054e-4
allele num: 85754
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1101C>T
  hgvsp: ENST00000398558.4:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1101C>T
  hgvsp: ENST00000389395.3:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1074C>T
  hgvsp: ENST00000588918.1:c.1074C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1694G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1101C>T
  hgvsp: ENST00000355415.2:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.138C>T
  hgvsp: ENST00000589063.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-180C>T
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14655
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11631
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14128
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15643
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4120
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala367Ala
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

19-3546346-GGCCACACCCAGTCCCTCCGCCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546346
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546324
    reference: chr 19
allele count: 1
allele frequency: 1.166126361452527e-5
allele num: 85754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsp: ENSP00000467207.1:p.Leu351ProfsTer23
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsp: ENSP00000374046.2:p.Leu360ProfsTer23
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsp: ENSP00000467635.1:p.Leu39ProfsTer23
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsp: ENSP00000347583.1:p.Leu360ProfsTer23
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsp: ENSP00000381566.3:p.Leu360ProfsTer23
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu360ProfsTer23
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: GGCCACACCCAGTCCCTCCGCCA
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

19-3546348-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546348
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546348
    reference: chr 19
allele count: 1
allele frequency: 1.172470395122523e-5
allele num: 85290
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1099G>C
  hgvsp: ENSP00000381566.3:p.Ala367Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.136G>C
  hgvsp: ENSP00000467635.1:p.Ala46Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-182G>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1072G>C
  hgvsp: ENSP00000467207.1:p.Ala358Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1696C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1099G>C
  hgvsp: ENSP00000374046.2:p.Ala367Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1099G>C
  hgvsp: ENSP00000347583.1:p.Ala367Pro
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala367Pro
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD

19-3546353-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546353
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546353
    reference: chr 19
allele count: 1
allele frequency: 1.184216759035574e-5
allele num: 84444
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-187G>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.131G>C
  hgvsp: ENSP00000467635.1:p.Gly44Ala
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1701C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1067G>C
  hgvsp: ENSP00000467207.1:p.Gly356Ala
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1094G>C
  hgvsp: ENSP00000374046.2:p.Gly365Ala
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1094G>C
  hgvsp: ENSP00000347583.1:p.Gly365Ala
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1094G>C
  hgvsp: ENSP00000381566.3:p.Gly365Ala
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7248
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly365Ala
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/19-3546354-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546354
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546354
    reference: chr 19
allele count: 1
allele frequency: 1.185705138846072e-5
allele num: 84338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1093G>T
  hgvsp: ENSP00000347583.1:p.Gly365Cys
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1066G>T
  hgvsp: ENSP00000467207.1:p.Gly356Cys
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1093G>T
  hgvsp: ENSP00000374046.2:p.Gly365Cys
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1093G>T
  hgvsp: ENSP00000381566.3:p.Gly365Cys
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-188G>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.130G>T
  hgvsp: ENSP00000467635.1:p.Gly44Cys
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1702C>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11733
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15329
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4004
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly365Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

19-3546357-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546357
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546357
    reference: chr 19
allele count: 1
allele frequency: 1.18784596013589e-5
allele num: 84186
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-191C>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1063C>G
  hgvsp: ENSP00000467207.1:p.Leu355Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1090C>G
  hgvsp: ENSP00000374046.2:p.Leu364Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1090C>G
  hgvsp: ENSP00000347583.1:p.Leu364Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1090C>G
  hgvsp: ENSP00000381566.3:p.Leu364Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.127C>G
  hgvsp: ENSP00000467635.1:p.Leu43Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1705G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3615
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2695
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu364Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/19-3546360-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546360
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546360
    reference: chr 19
allele count: 1
allele frequency: 1.194885888397658e-5
allele num: 83690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-194G>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1060G>T
  hgvsp: ENSP00000467207.1:p.Gly354Ter
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.124G>T
  hgvsp: ENSP00000467635.1:p.Gly42Ter
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1087G>T
  hgvsp: ENSP00000381566.3:p.Gly363Ter
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1708C>A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1087G>T
  hgvsp: ENSP00000374046.2:p.Gly363Ter
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1087G>T
  hgvsp: ENSP00000347583.1:p.Gly363Ter
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13911
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21878
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly363Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/19-3546361-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546361
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546361
    reference: chr 19
allele count: 1
allele frequency: 1.193944314437175e-5
allele num: 83756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.123G>T
  hgvsp: ENSP00000467635.1:p.Glu41Asp
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-195G>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1059G>T
  hgvsp: ENSP00000467207.1:p.Glu353Asp
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1086G>T
  hgvsp: ENSP00000374046.2:p.Glu362Asp
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1086G>T
  hgvsp: ENSP00000347583.1:p.Glu362Asp
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1709C>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1086G>T
  hgvsp: ENSP00000381566.3:p.Glu362Asp
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12162
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu362Asp
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-3546361-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546361
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546361
    reference: chr 19
allele count: 12
allele frequency: 1.43273317732461e-4
allele num: 83756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-195G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1086G>A
  hgvsp: ENST00000389395.3:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1059G>A
  hgvsp: ENST00000588918.1:c.1059G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1709C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.123G>A
  hgvsp: ENST00000589063.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1086G>A
  hgvsp: ENST00000355415.2:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1086G>A
  hgvsp: ENST00000398558.4:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13836
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12162
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15505
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2624
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu362Glu
num of homozygotes: 1
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

19-3546362-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546362
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546362
    reference: chr 19
allele count: 1
allele frequency: 1.197748233321356e-5
allele num: 83490
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1710T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.122A>G
  hgvsp: ENSP00000467635.1:p.Glu41Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1085A>G
  hgvsp: ENSP00000374046.2:p.Glu362Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1085A>G
  hgvsp: ENSP00000381566.3:p.Glu362Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1085A>G
  hgvsp: ENSP00000347583.1:p.Glu362Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1058A>G
  hgvsp: ENSP00000467207.1:p.Glu353Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-196A>G
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13838
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3830
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3523
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu362Gly
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

19-3546363-CCGCCAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546363
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546357
    reference: chr 19
allele count: 2
allele frequency: 2.395094845755892e-5
allele num: 83504
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.115_120delCTGGCG
  hgvsp: ENSP00000467635.1:p.Leu39_Ala40del
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-203_577-198delCTGGCG
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1051_1056delCTGGCG
  hgvsp: ENSP00000467207.1:p.Leu351_Ala352del
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1078_1083delCTGGCG
  hgvsp: ENSP00000347583.1:p.Leu360_Ala361del
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1078_1083delCTGGCG
  hgvsp: ENSP00000374046.2:p.Leu360_Ala361del
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1078_1083delCTGGCG
  hgvsp: ENSP00000381566.3:p.Leu360_Ala361del
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13760
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6334
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3498
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22213
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu360_Ala361del
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: CCGCCAG
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

19-3546364-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546364
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546364
    reference: chr 19
allele count: 22
allele frequency: 2.645884447010151e-4
allele num: 83148
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1083G>A
  hgvsp: ENST00000398558.4:c.1083G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-198G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1083G>A
  hgvsp: ENST00000389395.3:c.1083G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1056G>A
  hgvsp: ENST00000588918.1:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.120G>A
  hgvsp: ENST00000589063.1:c.120G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1083G>A
  hgvsp: ENST00000355415.2:c.1083G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1712C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13610
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12593
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15952
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3714
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22318
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala361Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-3546365-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546365
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546365
    reference: chr 19
allele count: 10
allele frequency: 1.204848309597822e-4
allele num: 82998
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1082C>T
  hgvsp: ENSP00000381566.3:p.Ala361Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1082C>T
  hgvsp: ENSP00000374046.2:p.Ala361Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1082C>T
  hgvsp: ENSP00000347583.1:p.Ala361Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.119C>T
  hgvsp: ENSP00000467635.1:p.Ala40Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1055C>T
  hgvsp: ENSP00000467207.1:p.Ala352Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1713G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-199C>T
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16014
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13023
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13445
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala361Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-3546367-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546367
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546367
    reference: chr 19
allele count: 1
allele frequency: 1.2059234962134e-5
allele num: 82924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-201G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1053G>A
  hgvsp: ENST00000588918.1:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1080G>A
  hgvsp: ENST00000389395.3:c.1080G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.117G>A
  hgvsp: ENST00000589063.1:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1080G>A
  hgvsp: ENST00000398558.4:c.1080G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1715C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1080G>A
  hgvsp: ENST00000355415.2:c.1080G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13150
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3347
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu360Leu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-3546370-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546370
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546370
    reference: chr 19
allele count: 2
allele frequency: 2.419549963706751e-5
allele num: 82660
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1718C>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.114G>T
  hgvsp: ENST00000589063.1:c.114G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1077G>T
  hgvsp: ENST00000389395.3:c.1077G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1050G>T
  hgvsp: ENST00000588918.1:c.1050G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-204G>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1077G>T
  hgvsp: ENST00000398558.4:c.1077G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1077G>T
  hgvsp: ENST00000355415.2:c.1077G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13079
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala359Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD

19-3546370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546370
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546370
    reference: chr 19
allele count: 4
allele frequency: 4.839099927413501e-5
allele num: 82660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1050G>A
  hgvsp: ENST00000588918.1:c.1050G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-204G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1077G>A
  hgvsp: ENST00000398558.4:c.1077G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.114G>A
  hgvsp: ENST00000589063.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1077G>A
  hgvsp: ENST00000389395.3:c.1077G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1077G>A
  hgvsp: ENST00000355415.2:c.1077G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1718C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13079
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13893
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17914
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22883
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala359Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

19-3546371-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546371
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546371
    reference: chr 19
allele count: 26
allele frequency: 3.157562361856647e-4
allele num: 82342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.113C>T
  hgvsp: ENSP00000467635.1:p.Ala38Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1049C>T
  hgvsp: ENSP00000467207.1:p.Ala350Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1076C>T
  hgvsp: ENSP00000374046.2:p.Ala359Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1719G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-205C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1076C>T
  hgvsp: ENSP00000347583.1:p.Ala359Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1076C>T
  hgvsp: ENSP00000381566.3:p.Ala359Val
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13894
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13040
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17455
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala359Val
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/19-3546374-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546374
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546374
    reference: chr 19
allele count: 2
allele frequency: 2.42883513067133e-5
allele num: 82344
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1722A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.110T>G
  hgvsp: ENSP00000467635.1:p.Val37Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1046T>G
  hgvsp: ENSP00000467207.1:p.Val349Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1073T>G
  hgvsp: ENSP00000347583.1:p.Val358Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-208T>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1073T>G
  hgvsp: ENSP00000374046.2:p.Val358Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1073T>G
  hgvsp: ENSP00000381566.3:p.Val358Gly
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12873
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23251
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val358Gly
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

19-3546381-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546381
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546381
    reference: chr 19
allele count: 1
allele frequency: 1.238083446824316e-5
allele num: 80770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1066G>C
  hgvsp: ENSP00000374046.2:p.Ala356Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1066G>C
  hgvsp: ENSP00000381566.3:p.Ala356Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.103G>C
  hgvsp: ENSP00000467635.1:p.Ala35Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1066G>C
  hgvsp: ENSP00000347583.1:p.Ala356Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-215G>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1729C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1039G>C
  hgvsp: ENSP00000467207.1:p.Ala347Pro
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23871
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala356Pro
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

19-3546381-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546381
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546381
    reference: chr 19
allele count: 27
allele frequency: 3.342825306425653e-4
allele num: 80770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1039G>A
  hgvsp: ENSP00000467207.1:p.Ala347Thr
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1729C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.103G>A
  hgvsp: ENSP00000467635.1:p.Ala35Thr
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1066G>A
  hgvsp: ENSP00000374046.2:p.Ala356Thr
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-215G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1066G>A
  hgvsp: ENSP00000347583.1:p.Ala356Thr
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1066G>A
  hgvsp: ENSP00000381566.3:p.Ala356Thr
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12856
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17221
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14255
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala356Thr
num of homozygotes: 1
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

19-3546382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546382
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546382
    reference: chr 19
allele count: 517
allele frequency: 6.408508317425688e-3
allele num: 80674
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1730G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1065C>T
  hgvsp: ENST00000398558.4:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-216C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1038C>T
  hgvsp: ENST00000588918.1:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.102C>T
  hgvsp: ENST00000589063.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1065C>T
  hgvsp: ENST00000389395.3:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1065C>T
  hgvsp: ENST00000355415.2:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 1.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 17253
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 12744
  bin: 1.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14407
  bin: 2.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 6991
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 23934
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Ala355Ala
num of homozygotes: 11
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-3546383-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546383
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546383
    reference: chr 19
allele count: 3
allele frequency: 3.765249259500979e-5
allele num: 79676
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1731G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1064C>T
  hgvsp: ENSP00000347583.1:p.Ala355Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-217C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.101C>T
  hgvsp: ENSP00000467635.1:p.Ala34Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1037C>T
  hgvsp: ENSP00000467207.1:p.Ala346Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1064C>T
  hgvsp: ENSP00000381566.3:p.Ala355Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1064C>T
  hgvsp: ENSP00000374046.2:p.Ala355Val
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14117
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2789
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala355Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

19-3546383-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546383
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546383
    reference: chr 19
allele count: 1
allele frequency: 1.255083086500326e-5
allele num: 79676
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1037C>G
  hgvsp: ENSP00000467207.1:p.Ala346Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.101C>G
  hgvsp: ENSP00000467635.1:p.Ala34Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-217C>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1064C>G
  hgvsp: ENSP00000381566.3:p.Ala355Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1731G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1064C>G
  hgvsp: ENSP00000374046.2:p.Ala355Gly
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1064C>G
  hgvsp: ENSP00000347583.1:p.Ala355Gly
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17452
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala355Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-3546389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546389
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546389
    reference: chr 19
allele count: 3
allele frequency: 3.794202458643193e-5
allele num: 79068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.95C>T
  hgvsp: ENSP00000467635.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1058C>T
  hgvsp: ENSP00000347583.1:p.Ala353Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1058C>T
  hgvsp: ENSP00000381566.3:p.Ala353Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1031C>T
  hgvsp: ENSP00000467207.1:p.Ala344Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1737G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-223C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1058C>T
  hgvsp: ENSP00000374046.2:p.Ala353Val
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14344
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18143
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7053
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18876
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala353Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-3546390-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546390
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546390
    reference: chr 19
allele count: 1
allele frequency: 1.287730503760173e-5
allele num: 77656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-224G>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1057G>T
  hgvsp: ENSP00000381566.3:p.Ala353Ser
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1057G>T
  hgvsp: ENSP00000347583.1:p.Ala353Ser
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1057G>T
  hgvsp: ENSP00000374046.2:p.Ala353Ser
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1030G>T
  hgvsp: ENSP00000467207.1:p.Ala344Ser
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.94G>T
  hgvsp: ENSP00000467635.1:p.Ala32Ser
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1738C>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13419
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala353Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-3546394-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546394
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546394
    reference: chr 19
allele count: 1
allele frequency: 1.286636988240138e-5
allele num: 77722
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1053C>T
  hgvsp: ENST00000398558.4:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1053C>T
  hgvsp: ENST00000355415.2:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.90C>T
  hgvsp: ENST00000589063.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1742G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1026C>T
  hgvsp: ENST00000588918.1:c.1026C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1053C>T
  hgvsp: ENST00000389395.3:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-228C>T
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13645
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2487
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile351Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-3546396-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546396
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546396
    reference: chr 19
allele count: 1
allele frequency: 1.291689271228913e-5
allele num: 77418
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1024A>G
  hgvsp: ENSP00000467207.1:p.Ile342Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1051A>G
  hgvsp: ENSP00000381566.3:p.Ile351Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-230A>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1051A>G
  hgvsp: ENSP00000347583.1:p.Ile351Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.88A>G
  hgvsp: ENSP00000467635.1:p.Ile30Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1744T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1051A>G
  hgvsp: ENSP00000374046.2:p.Ile351Val
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile351Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

19-3546409-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546409
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546409
    reference: chr 19
allele count: 1
allele frequency: 1.376045794804051e-5
allele num: 72672
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1011A>G
  hgvsp: ENST00000588918.1:c.1011A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.75A>G
  hgvsp: ENST00000589063.1:c.75A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1038A>G
  hgvsp: ENST00000355415.2:c.1038A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1038A>G
  hgvsp: ENST00000389395.3:c.1038A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1757T>C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1038A>G
  hgvsp: ENST00000398558.4:c.1038A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-243A>G
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14810
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28879
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser346Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

19-3546411-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546411
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546411
    reference: chr 19
allele count: 1
allele frequency: 1.386078230255316e-5
allele num: 72146
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1759A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1036T>C
  hgvsp: ENSP00000347583.1:p.Ser346Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.73T>C
  hgvsp: ENSP00000467635.1:p.Ser25Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-245T>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1009T>C
  hgvsp: ENSP00000467207.1:p.Ser337Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1036T>C
  hgvsp: ENSP00000381566.3:p.Ser346Pro
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1036T>C
  hgvsp: ENSP00000374046.2:p.Ser346Pro
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser346Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-3546412-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546412
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546412
    reference: chr 19
allele count: 3
allele frequency: 4.189359028068705e-5
allele num: 71610
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1760G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1035C>T
  hgvsp: ENST00000398558.4:c.1035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1035C>T
  hgvsp: ENST00000389395.3:c.1035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.72C>T
  hgvsp: ENST00000589063.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1035C>T
  hgvsp: ENST00000355415.2:c.1035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1008C>T
  hgvsp: ENST00000588918.1:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-246C>T
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10607
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe345Phe
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

19-3546412-GAAGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546412
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546408
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 71610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1031_1034delACTT
  hgvsp: ENSP00000347583.1:p.Tyr344SerfsTer6
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.68_71delACTT
  hgvsp: ENSP00000467635.1:p.Tyr23SerfsTer6
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1004_1007delACTT
  hgvsp: ENSP00000467207.1:p.Tyr335SerfsTer6
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-250_577-247delACTT
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1031_1034delACTT
  hgvsp: ENSP00000374046.2:p.Tyr344SerfsTer6
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1762_456+1765delAGTA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1031_1034delACTT
  hgvsp: ENSP00000381566.3:p.Tyr344SerfsTer6
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: frameshift
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20764
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr344SerfsTer6
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: GAAGT
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-3546418-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546418
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546418
    reference: chr 19
allele count: 1
allele frequency: 1.431229426077e-5
allele num: 69870
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1766G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-252C>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1029C>G
  hgvsp: ENST00000389395.3:c.1029C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1029C>G
  hgvsp: ENST00000355415.2:c.1029C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.66C>G
  hgvsp: ENST00000589063.1:c.66C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1002C>G
  hgvsp: ENST00000588918.1:c.1002C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1029C>G
  hgvsp: ENST00000398558.4:c.1029C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3750
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12464
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr343Thr
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

19-3546419-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546419
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546419
    reference: chr 19
allele count: 2
allele frequency: 2.885753037255072e-5
allele num: 69306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1028C>T
  hgvsp: ENSP00000347583.1:p.Thr343Ile
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-253C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1028C>T
  hgvsp: ENSP00000381566.3:p.Thr343Ile
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1001C>T
  hgvsp: ENSP00000467207.1:p.Thr334Ile
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1767G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1028C>T
  hgvsp: ENSP00000374046.2:p.Thr343Ile
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.65C>T
  hgvsp: ENSP00000467635.1:p.Thr22Ile
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16772
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3916
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11561
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30740
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr343Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

19-3546419-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546419
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546419
    reference: chr 19
allele count: 1
allele frequency: 1.442876518627536e-5
allele num: 69306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.65C>A
  hgvsp: ENSP00000467635.1:p.Thr22Asn
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-253C>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1767G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1028C>A
  hgvsp: ENSP00000347583.1:p.Thr343Asn
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1028C>A
  hgvsp: ENSP00000381566.3:p.Thr343Asn
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1028C>A
  hgvsp: ENSP00000374046.2:p.Thr343Asn
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.1001C>A
  hgvsp: ENSP00000467207.1:p.Thr334Asn
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16772
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3916
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30740
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr343Asn
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

19-3546423-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546423
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546423
    reference: chr 19
allele count: 1
allele frequency: 1.46053630893264e-5
allele num: 68468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024A>G
  hgvsp: ENSP00000374046.2:p.Met342Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-257A>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997A>G
  hgvsp: ENSP00000467207.1:p.Met333Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024A>G
  hgvsp: ENSP00000347583.1:p.Met342Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1771T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61A>G
  hgvsp: ENSP00000467635.1:p.Met21Val
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024A>G
  hgvsp: ENSP00000381566.3:p.Met342Val
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17327
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11154
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met342Val
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

19-3546423-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546423
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546423
    reference: chr 19
allele count: 3
allele frequency: 4.38160892679792e-5
allele num: 68468
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024A>C
  hgvsp: ENSP00000381566.3:p.Met342Leu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61A>C
  hgvsp: ENSP00000467635.1:p.Met21Leu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024A>C
  hgvsp: ENSP00000374046.2:p.Met342Leu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024A>C
  hgvsp: ENSP00000347583.1:p.Met342Leu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997A>C
  hgvsp: ENSP00000467207.1:p.Met333Leu
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-257A>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1771T>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17327
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 31403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11154
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met342Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

19-3546425-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546425
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546425
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 67470
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1773T>G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-2A>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-2A>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-2A>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-2A>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-2A>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-259A>C
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: splice acceptor
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 21569
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31526
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1024-2A>C
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

19-3546426-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546426
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546426
    reference: chr 19
allele count: 2
allele frequency: 2.995716125939906e-5
allele num: 66762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-3C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-3C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-3C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-260C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-3C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-3C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1774G>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18326
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31472
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3740
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1024-3C>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

19-3546431-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546431
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546431
    reference: chr 19
allele count: 1
allele frequency: 1.550387596899225e-5
allele num: 64500
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1779G>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-8C>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-8C>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-8C>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-265C>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-8C>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-8C>A
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21766
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4027
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1024-8C>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

19-3546432-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546432
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546432
    reference: chr 19
allele count: 1
allele frequency: 1.549810923067386e-5
allele num: 64524
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-9T>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1780A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-9T>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-9T>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-9T>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-9T>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-266T>C
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5627
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

19-3546435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546435
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546435
    reference: chr 19
allele count: 1
allele frequency: 1.58473582453805e-5
allele num: 63102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-12C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1783G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-12C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-269C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-12C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-12C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-12C>T
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19634
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31426
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3806
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6109
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-3546438-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546438
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546438
    reference: chr 19
allele count: 2
allele frequency: 3.253407944822201e-5
allele num: 61474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-15G>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-15G>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-15G>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-272G>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1786C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-15G>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-15G>T
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19813
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6685
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6897
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

19-3546438-C-CCGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546438
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546441
    reference: chr 19
allele count: 1
allele frequency: 1.626703972411101e-5
allele num: 61474
alternate allele: CCGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-18_61-16dupCCG
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-18_1024-16dupCCG
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-275_577-273dupCCG
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-18_997-16dupCCG
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-18_1024-16dupCCG
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1787_456+1789dupCGG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-18_1024-16dupCCG
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6685
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

19-3546439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546439
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546439
    reference: chr 19
allele count: 19
allele frequency: 3.152062112213411e-4
allele num: 60278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-16G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-16G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1787C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-273G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-16G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-16G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-16G>A
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19721
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22062
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4040
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS

19-3546440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546440
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546440
    reference: chr 19
allele count: 546
allele frequency: 9.093331556858304e-3
allele num: 60044
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1788G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-17C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-274C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-17C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-17C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-17C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-17C>T
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7011
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 22170
  bin: 7.5e0
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 1.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19707
  bin: 1.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 2.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4163
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 30337
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 530
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.75e1
  variant carriers: 7
num of homozygotes: 14
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-3546441-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546441
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546441
    reference: chr 19
allele count: 2
allele frequency: 3.34739238133494e-5
allele num: 59748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-275C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1789G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-18C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-18C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-18C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-18C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-18C>T
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19668
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7469
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30759
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4007
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/19-3546446-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546446
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546446
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 57708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-23T>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-23T>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-23T>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-280T>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-23T>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1794A>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-23T>G
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22570
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29744
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-3546452-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546452
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546452
    reference: chr 19
allele count: 2
allele frequency: 3.649768239716778e-5
allele num: 54798
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1800A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-29T>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-29T>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-29T>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-29T>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-286T>C
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-29T>C
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22894
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18654
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

19-3546453-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546453
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546453
    reference: chr 19
allele count: 7
allele frequency: 1.298845882658552e-4
allele num: 53894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-30G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-30G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1801C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-287G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-30G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-30G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-30G>A
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18335
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3524
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/19-3546454-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546454
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546454
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 53194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-288T>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-31T>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-31T>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-31T>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-31T>G
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1802A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-31T>G
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 18149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23239
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25188
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3853
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10219
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4275
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4257
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

19-3546455-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546455
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546455
    reference: chr 19
allele count: 8
allele frequency: 1.547568383177932e-4
allele num: 51694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-32G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-32G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-289G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-32G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1803C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-32G>A
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-32G>A
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17565
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4274
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4083
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

19-3546460-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3546460
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3546460
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 50022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000347583
  ensembl transcript: ENST00000355415
  gene symbol: MFSD12
  hgvsc: ENST00000355415.2:c.1024-37C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467207
  ensembl transcript: ENST00000588918
  gene symbol: MFSD12
  hgvsc: ENST00000588918.1:c.997-37C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000381566
  ensembl transcript: ENST00000398558
  gene symbol: MFSD12
  hgvsc: ENST00000398558.4:c.1024-37C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267436
  ensembl transcript: ENST00000589360
  gene symbol: AC005786.7
  hgvsc: ENST00000589360.1:n.456+1808G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000374046
  ensembl transcript: ENST00000389395
  gene symbol: MFSD12
  hgvsc: ENST00000389395.3:c.1024-37C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000467635
  ensembl transcript: ENST00000589063
  gene symbol: MFSD12
  hgvsc: ENST00000589063.1:c.61-37C>T
  variant of: http://identifiers.org/hgnc/28299
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161091
  ensembl protein: ENSP00000465302
  ensembl transcript: ENST00000589995
  gene symbol: MFSD12
  hgvsc: ENST00000589995.1:c.577-294C>T
  variant of: http://identifiers.org/hgnc/28299
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24237
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 3972
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3735
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 423
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.825283831635819e-5
allele num: 54786
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.033e0

QD
type: SiteQuality
SIO_000300: 1.325e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 1.094018e6

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

GenotypeQuality
all individuals: 2269
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3960
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21971
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54928
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.42571998859424e-4
allele num: 7014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3706
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

DP
type: SiteQuality
SIO_000300: 1.093888e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.682e1

QD
type: SiteQuality
SIO_000300: 3.74e0

VQSLOD
type: SiteQuality
SIO_000300: -1.681e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.511e0

GenotypeQuality
all individuals: 2368
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16318
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2774
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7766
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.811989100817439e-5
allele num: 14680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3630
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 1.084199e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.76e-1

QD
type: SiteQuality
SIO_000300: 2.683e1

VQSLOD
type: SiteQuality
SIO_000300: -2.602e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

FS
type: SiteQuality
SIO_000300: 1.444e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 679
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 21593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 942
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 601
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 1

Latino
type: Population
allele count: 2
allele frequency: 2.327205026762858e-4
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.471237310578196e-4
allele num: 54376
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.583979328165374e-4
allele num: 7740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3610
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.364256480218281e-4
allele num: 14660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

QD
type: SiteQuality
SIO_000300: 1.18e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

DP
type: SiteQuality
SIO_000300: 1.083321e6

GenotypeQuality
all individuals: 20858
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16472
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2714
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.846312913112514e-5
allele num: 54162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.891008962127783e-4
allele num: 6918
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.298364061282784e-4
allele num: 7702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.052826057205419e-4
allele num: 14614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.75e-1

DP
type: SiteQuality
SIO_000300: 1.078119e6

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

QD
type: SiteQuality
SIO_000300: 9.5e0

GenotypeQuality
all individuals: 804
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2699
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.844610049435549e-5
allele num: 54212
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.076429e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

QD
type: SiteQuality
SIO_000300: 8.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

FS
type: SiteQuality
SIO_000300: 3.925e0

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.306e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.38e-1

GenotypeQuality
all individuals: 876
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4245
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 916
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 423
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 721
bin: 9.75e1
variant carriers: 52

GenotypeQuality
all individuals: 804
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 3.39943342776204e-3
allele num: 3530
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.606202762574928e-4
allele num: 7674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 6.478602102769139e-4
allele num: 54024
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.740476842970677e-4
allele num: 14596
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.520300398967379e-4
allele num: 8522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6888
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

QD
type: SiteQuality
SIO_000300: 1.107e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.99e0

DP
type: SiteQuality
SIO_000300: 1.067079e6

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2621
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20158
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.570409982174688e-5
allele num: 53856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3506
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.912904165452956e-4
allele num: 6866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

FS
type: SiteQuality
SIO_000300: 1.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 1.065176e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

GenotypeQuality
all individuals: 1149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3048
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.200480192076831e-4
allele num: 8330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14466
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.57e-1

QD
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

FS
type: SiteQuality
SIO_000300: 2.208e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.744e-1

DP
type: SiteQuality
SIO_000300: 1.045141e6

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

MQ
type: SiteQuality
SIO_000300: 5.693e1

GenotypeQuality
all individuals: 767
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16955
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.881892431028642e-5
allele num: 53138
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.045141e6

FS
type: SiteQuality
SIO_000300: 2.208e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.744e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

QD
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.693e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

GenotypeQuality
all individuals: 4118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18185
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3374
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.914672935970129e-5
allele num: 14462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.885938442969222e-5
allele num: 53024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7528
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

MQ
type: SiteQuality
SIO_000300: 5.527e1

FS
type: SiteQuality
SIO_000300: 7.813e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.040746e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

GenotypeQuality
all individuals: 798
bin: 9.75e1
variant carriers: 127

GenotypeQuality
all individuals: 5022
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2061
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 13637
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 688
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2153
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 493
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 201
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 785
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 1.016260162601626e-3
allele num: 7872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.848637267516669e-5
allele num: 51294
num of homozygotes: 0

African
type: Population
allele count: 125
allele frequency: 1.701143168209036e-2
allele num: 7348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14120
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

FS
type: SiteQuality
SIO_000300: 2.482e0

QD
type: SiteQuality
SIO_000300: 1.227e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

DP
type: SiteQuality
SIO_000300: 1.000471e6

GenotypeQuality
all individuals: 694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3634
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2561
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 13545
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.177717583323519e-4
allele num: 50946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.491488193300384e-4
allele num: 7284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3110
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.276813074565884e-4
allele num: 7832
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.98905e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

FS
type: SiteQuality
SIO_000300: 8.337e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2062
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4213
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 1.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.887368379540166e-5
allele num: 50714
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.244146113019045e-4
allele num: 6406
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.783421315451562e-3
allele num: 14018
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.678e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

DP
type: SiteQuality
SIO_000300: 1.000819e6

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1469
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18526
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4211
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2033
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1577
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.915526284655125e-5
allele num: 50714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14028
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.945e0

DP
type: SiteQuality
SIO_000300: 9.98548e5

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

GenotypeQuality
all individuals: 673
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4897
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18526
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1309
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13439
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1577
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 3.746499980281579e-4
allele num: 50714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14028
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.945e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

DP
type: SiteQuality
SIO_000300: 9.98548e5

GenotypeQuality
all individuals: 4860
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13285
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3553
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 199
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.291655902867476e-4
allele num: 7742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50534
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.386193512614361e-4
allele num: 7214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14004
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.99145e5

FS
type: SiteQuality
SIO_000300: 1.331e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

QD
type: SiteQuality
SIO_000300: 1.46e1

MQRankSum
type: SiteQuality
SIO_000300: 9.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 420
bin: 5.75e1
variant carriers: 183

GenotypeQuality
all individuals: 2040
bin: 7.5e0
variant carriers: 90

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 280

GenotypeQuality
all individuals: 909
bin: 5.25e1
variant carriers: 255

GenotypeQuality
all individuals: 497
bin: 7.25e1
variant carriers: 190

GenotypeQuality
all individuals: 3096
bin: 3.25e1
variant carriers: 153

GenotypeQuality
all individuals: 2158
bin: 3.75e1
variant carriers: 200

GenotypeQuality
all individuals: 14797
bin: 9.75e1
variant carriers: 14489

GenotypeQuality
all individuals: 254
bin: 8.75e1
variant carriers: 210

GenotypeQuality
all individuals: 2821
bin: 2.75e1
variant carriers: 108

GenotypeQuality
all individuals: 507
bin: 7.75e1
variant carriers: 265

Latino
type: Population
allele count: 1301
allele frequency: 1.67309670781893e-1
allele num: 7776
num of homozygotes: 77

Other
type: Population
allele count: 109
allele frequency: 1.769480519480519e-1
allele num: 616
num of homozygotes: 9

European (Finnish)
type: Population
allele count: 806
allele frequency: 2.506218905472637e-1
allele num: 3216
num of homozygotes: 73

African
type: Population
allele count: 2741
allele frequency: 3.695066055540577e-1
allele num: 7418
num of homozygotes: 450

European (Non-Finnish)
type: Population
allele count: 10148
allele frequency: 2.00339558573854e-1
allele num: 50654
num of homozygotes: 832

East Asian
type: Population
allele count: 75
allele frequency: 1.180358829084042e-2
allele num: 6354
num of homozygotes: 0

South Asian
type: Population
allele count: 2944
allele frequency: 2.084985835694051e-1
allele num: 14120
num of homozygotes: 320

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.87e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.133997e6

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

FS
type: SiteQuality
SIO_000300: 5.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 1.617e1

GenotypeQuality
all individuals: 1362
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3034
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.396449704142012e-5
allele num: 13520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2808
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.87188e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

QD
type: SiteQuality
SIO_000300: 1.364e1

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 20637
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 378
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3729
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1324
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3034
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1860
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 719
bin: 5.75e1
variant carriers: 1

African
type: Population
allele count: 62
allele frequency: 9.309309309309309e-3
allele num: 6660
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.396449704142012e-5
allele num: 13520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 3.715170278637771e-4
allele num: 48450
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.216216216216216e-3
allele num: 7400
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.677852348993289e-3
allele num: 596
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.364e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.87188e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

GenotypeQuality
all individuals: 988
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21055
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1872
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 7.75e1
variant carriers: 1

East Asian
type: Population
allele count: 8
allele frequency: 1.270648030495553e-3
allele num: 6296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.694399290675336e-4
allele num: 13534
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.683501683501683e-3
allele num: 594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.190672719768881e-5
allele num: 48460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.066856330014225e-3
allele num: 2812
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.161e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 9.88116e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

GenotypeQuality
all individuals: 21055
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15643
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
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variant carriers: 1

GenotypeQuality
all individuals: 521
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 477
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variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3680
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.063557573256294e-5
allele num: 48460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2812
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

DP
type: SiteQuality
SIO_000300: 9.88116e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

QD
type: SiteQuality
SIO_000300: 1.161e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4080
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 338
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variant carriers: 0

GenotypeQuality
all individuals: 767
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variant carriers: 1

GenotypeQuality
all individuals: 21244
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variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
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variant carriers: 0

GenotypeQuality
all individuals: 15626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.075636182489933e-5
allele num: 48178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.186e0

MQRankSum
type: SiteQuality
SIO_000300: -2.491e0

DP
type: SiteQuality
SIO_000300: 9.84997e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.122e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

QD
type: SiteQuality
SIO_000300: 1.619e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.286e0

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
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variant carriers: 0

GenotypeQuality
all individuals: 1380
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variant carriers: 0

GenotypeQuality
all individuals: 4054
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
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variant carriers: 0

GenotypeQuality
all individuals: 1271
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variant carriers: 0

GenotypeQuality
all individuals: 1451
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variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09766739385803e-5
allele num: 47672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.76476e5

VQSLOD
type: SiteQuality
SIO_000300: -1.961e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

QD
type: SiteQuality
SIO_000300: 4.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

FS
type: SiteQuality
SIO_000300: 9.294e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 505
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21426
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 766
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 199
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variant carriers: 0

GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 14854
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3647
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.099340806986606e-5
allele num: 47634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.184e0

DP
type: SiteQuality
SIO_000300: 9.77479e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

FS
type: SiteQuality
SIO_000300: 7.679e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

QD
type: SiteQuality
SIO_000300: 2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

GenotypeQuality
all individuals: 21767
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 256
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variant carriers: 0

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
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variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3976
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 7.491759065028469e-5
allele num: 13348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.75692e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.98e-1

GenotypeQuality
all individuals: 299
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3931
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3569
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.115685693733339e-5
allele num: 47266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.064e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

MQRankSum
type: SiteQuality
SIO_000300: -7.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 9.74719e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

QD
type: SiteQuality
SIO_000300: 1.12e1

GenotypeQuality
all individuals: 501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22082
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3542
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
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variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15505
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.608234158893535e-4
allele num: 6218
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.192e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 9.76252e5

QD
type: SiteQuality
SIO_000300: 1.28e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

GenotypeQuality
all individuals: 269
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 774
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 3542
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2714
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 4.123144584936779e-4
allele num: 7276
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 6.018657839301836e-4
allele num: 13292
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.114254302507506e-5
allele num: 47298
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

DP
type: SiteQuality
SIO_000300: 9.76252e5

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

FS
type: SiteQuality
SIO_000300: 4.192e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.84e-1

GenotypeQuality
all individuals: 87
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15543
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GenotypeQuality
all individuals: 1754
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.54261577915221e-5
allele num: 13258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.67e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

DP
type: SiteQuality
SIO_000300: 9.75971e5

QD
type: SiteQuality
SIO_000300: 1.014e1

GenotypeQuality
all individuals: 1108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.241241835609467e-5
allele num: 47156
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

MQ
type: SiteQuality
SIO_000300: 5.686e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

DP
type: SiteQuality
SIO_000300: 9.76555e5

FS
type: SiteQuality
SIO_000300: 8.492000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2696
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.742160278745645e-3
allele num: 574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.769021044559939e-4
allele num: 46948
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.718464926077383e-4
allele num: 6358
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.474587245063128e-4
allele num: 6178
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.574609907589759e-5
allele num: 13202
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.432e0

QD
type: SiteQuality
SIO_000300: 2.45e1

DP
type: SiteQuality
SIO_000300: 9.7836e5

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.11e-1

GenotypeQuality
all individuals: 770
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1026
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1332
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GenotypeQuality
all individuals: 3361
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2704
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 6.339144215530904e-4
allele num: 6310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.134289495027106e-5
allele num: 46854
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 8.080155138978668e-4
allele num: 6188
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

QD
type: SiteQuality
SIO_000300: 1.162e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 4.32e-1

DP
type: SiteQuality
SIO_000300: 9.82092e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

GenotypeQuality
all individuals: 22615
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 762
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GenotypeQuality
all individuals: 991
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.138031300778244e-5
allele num: 46772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13160
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

QD
type: SiteQuality
SIO_000300: 1.289e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

DP
type: SiteQuality
SIO_000300: 9.78133e5

VQSLOD
type: SiteQuality
SIO_000300: 4.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.287980789846062e-5
allele num: 46642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.899e0

QD
type: SiteQuality
SIO_000300: 9.51e0

DP
type: SiteQuality
SIO_000300: 9.84321e5

VQSLOD
type: SiteQuality
SIO_000300: 2.43e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2712
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.40016802016242e-4
allele num: 7142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.431971184769092e-5
allele num: 46642
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.84321e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 4
allele frequency: 3.053435114503817e-4
allele num: 13100
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.797985450475658e-4
allele num: 7148
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 16
allele frequency: 2.598246183825917e-3
allele num: 6158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.618832148243914e-5
allele num: 46410
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2684
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

VQSLOD
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 1.105e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1790
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GenotypeQuality
all individuals: 112
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46458
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.191828917969997e-4
allele num: 6266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.865e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.39e-1

DP
type: SiteQuality
SIO_000300: 9.8395e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

GenotypeQuality
all individuals: 457
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17488
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 818
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.194329851663302e-5
allele num: 45572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

FS
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 1.103e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.77158e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

GenotypeQuality
all individuals: 316
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17488
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 439
bin: 7.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 991
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 781
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 1721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2588
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.255208333333333e-4
allele num: 6144
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.442585112521639e-4
allele num: 6932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 4.388659703326604e-4
allele num: 45572
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.092624091541673e-4
allele num: 12934
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 9.77158e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.103e1

GenotypeQuality
all individuals: 18061
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 463
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2835
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 185
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 423
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 325
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1693
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1100
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1201
bin: 9.75e1
variant carriers: 490

East Asian
type: Population
allele count: 68
allele frequency: 1.12396694214876e-2
allele num: 6050
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 6
allele frequency: 2.309468822170901e-3
allele num: 2598
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.508771929824561e-3
allele num: 570
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.302507326603712e-3
allele num: 6142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 64
allele frequency: 1.40789300013199e-3
allele num: 45458
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 2.025462962962963e-3
allele num: 6912
num of homozygotes: 0

South Asian
type: Population
allele count: 355
allele frequency: 2.742583436341162e-2
allele num: 12944
num of homozygotes: 10

DP
type: SiteQuality
SIO_000300: 9.83153e5

FS
type: SiteQuality
SIO_000300: 5.31e-1

QD
type: SiteQuality
SIO_000300: 1.413e1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

GenotypeQuality
all individuals: 1677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 445
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24130
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 940
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
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variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 661
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.647446457990115e-4
allele num: 6070
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.469723691945914e-4
allele num: 6804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.22390250411422e-5
allele num: 44966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

QD
type: SiteQuality
SIO_000300: 4.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

FS
type: SiteQuality
SIO_000300: 1.1014e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

DP
type: SiteQuality
SIO_000300: 9.74065e5

GenotypeQuality
all individuals: 2789
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44966
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.836990595611286e-5
allele num: 12760
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

QD
type: SiteQuality
SIO_000300: 4.85e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.1014e1

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

DP
type: SiteQuality
SIO_000300: 9.74065e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
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variant carriers: 0

GenotypeQuality
all individuals: 2822
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variant carriers: 0

GenotypeQuality
all individuals: 1224
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variant carriers: 0

GenotypeQuality
all individuals: 409
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variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
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variant carriers: 1

GenotypeQuality
all individuals: 1721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 744
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.966478789676654e-4
allele num: 6742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.242152466367713e-5
allele num: 44600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.141e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

FS
type: SiteQuality
SIO_000300: 2.971e0

DP
type: SiteQuality
SIO_000300: 9.65195e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.432e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2513
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
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GenotypeQuality
all individuals: 1518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25366
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variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
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variant carriers: 0

GenotypeQuality
all individuals: 435
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variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.283000776220264e-5
allele num: 43802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

QD
type: SiteQuality
SIO_000300: 2.41e0

DP
type: SiteQuality
SIO_000300: 9.49931e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.286e0

GenotypeQuality
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
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variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.25e1
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GenotypeQuality
all individuals: 2851
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.721170395869191e-4
allele num: 5810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43806
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.955e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.49438e5

QD
type: SiteQuality
SIO_000300: 8.779999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

GenotypeQuality
all individuals: 708
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2555
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
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variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26327
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.292736610418195e-5
allele num: 43616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.75e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

DP
type: SiteQuality
SIO_000300: 9.46147e5

GenotypeQuality
all individuals: 459
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.448100274187231e-5
allele num: 40848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

FS
type: SiteQuality
SIO_000300: 4.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.077e-1

DP
type: SiteQuality
SIO_000300: 8.90769e5

QD
type: SiteQuality
SIO_000300: 6.38e0

GenotypeQuality
all individuals: 3051
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5632
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.845018450184502e-4
allele num: 5420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11842
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.157e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

FS
type: SiteQuality
SIO_000300: 2.059e0

DP
type: SiteQuality
SIO_000300: 8.80368e5

MQ
type: SiteQuality
SIO_000300: 5.747e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.605e1

GenotypeQuality
all individuals: 873
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.446386020651311e-5
allele num: 40288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.258e1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

FS
type: SiteQuality
SIO_000300: 4.126e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.7435e5

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

GenotypeQuality
all individuals: 3333
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29514
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GenotypeQuality
all individuals: 14004
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

DP
type: SiteQuality
SIO_000300: 8.7435e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.42e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

FS
type: SiteQuality
SIO_000300: 4.126e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.31e-1

GenotypeQuality
all individuals: 304
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 715
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variant carriers: 1

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39246
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.748251748251748e-4
allele num: 5720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5270
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.53e-1

DP
type: SiteQuality
SIO_000300: 8.43206e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

FS
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.509e0

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.571355104139882e-5
allele num: 38890
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.830161054172767e-4
allele num: 5464
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.493e0

DP
type: SiteQuality
SIO_000300: 8.33731e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.092e0

QD
type: SiteQuality
SIO_000300: 3.84e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.571355104139882e-5
allele num: 38890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.33731e5

QD
type: SiteQuality
SIO_000300: 3.84e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.092e0

VQSLOD
type: SiteQuality
SIO_000300: -2.493e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2106
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.783803068141277e-4
allele num: 5606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 3.639e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 8.16734e5

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.823093772817357e-5
allele num: 38348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.004e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 3.639e0

QD
type: SiteQuality
SIO_000300: 1.362e1

DP
type: SiteQuality
SIO_000300: 8.16734e5

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 4521
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GenotypeQuality
all individuals: 10113
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5514
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.29e0

DP
type: SiteQuality
SIO_000300: 8.01451e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

QD
type: SiteQuality
SIO_000300: 1.217e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4764
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 964
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.347021708908138e-5
allele num: 37404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.611e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

QD
type: SiteQuality
SIO_000300: 1.109e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.89301e5

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

GenotypeQuality
all individuals: 714
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 2.5e0
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GenotypeQuality
all individuals: 5622
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31406
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6831
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.766864036301256e-5
allele num: 36142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5136
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 8.42e0

VQSLOD
type: SiteQuality
SIO_000300: -1.287e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.50734e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.449e0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

GenotypeQuality
all individuals: 714
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4010
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3662
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31632
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.763041556145004e-5
allele num: 36192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5142
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.558e0

QD
type: SiteQuality
SIO_000300: 5.23e0

DP
type: SiteQuality
SIO_000300: 7.49813e5

FS
type: SiteQuality
SIO_000300: 9.901e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

VQSLOD
type: SiteQuality
SIO_000300: -2.088e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.827094877304082e-5
allele num: 35372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5102
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.148e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.027e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.467e0

DP
type: SiteQuality
SIO_000300: 7.31375e5

QD
type: SiteQuality
SIO_000300: 7.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

GenotypeQuality
all individuals: 615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30880
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.900232018561485e-5
allele num: 34480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4926
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.1654395842356e-4
allele num: 4618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.093e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

DP
type: SiteQuality
SIO_000300: 7.09245e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

MQ
type: SiteQuality
SIO_000300: 5.699e1

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

GenotypeQuality
all individuals: 6897
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4994
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34480
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.1654395842356e-4
allele num: 4618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

QD
type: SiteQuality
SIO_000300: 6.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.699e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.093e0

DP
type: SiteQuality
SIO_000300: 7.09245e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 632
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 732
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 4448
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 369
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 17
allele frequency: 3.496503496503497e-3
allele num: 4862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.915409642117716e-5
allele num: 33810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.966e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.069e1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 7.00128e5

FS
type: SiteQuality
SIO_000300: 1.5414e1

GenotypeQuality
all individuals: 1686
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 12

GenotypeQuality
all individuals: 274
bin: 5.25e1
variant carriers: 19

GenotypeQuality
all individuals: 424
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 718
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4549
bin: 6.25e1
variant carriers: 12

GenotypeQuality
all individuals: 100
bin: 9.25e1
variant carriers: 19

GenotypeQuality
all individuals: 1660
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 18

GenotypeQuality
all individuals: 7244
bin: 7.5e0
variant carriers: 10

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 4.355039402737453e-3
allele num: 4822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 45
allele frequency: 1.335311572700297e-3
allele num: 33700
num of homozygotes: 0

African
type: Population
allele count: 477
allele frequency: 9.871688741721854e-2
allele num: 4832
num of homozygotes: 14

South Asian
type: Population
allele count: 3
allele frequency: 2.975009916699722e-4
allele num: 10084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

FS
type: SiteQuality
SIO_000300: 3.08e0

QD
type: SiteQuality
SIO_000300: 1.452e1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.99622e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

GenotypeQuality
all individuals: 459
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4461
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.095557418273261e-4
allele num: 4772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.972651605231867e-5
allele num: 33640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4628
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

DP
type: SiteQuality
SIO_000300: 6.91132e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.370000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.688e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.63e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.22e-1

QD
type: SiteQuality
SIO_000300: 7.71e0

GenotypeQuality
all individuals: 574
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4245
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8425
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3690
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.797e0

QD
type: SiteQuality
SIO_000300: 3.402e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.87e-2

DP
type: SiteQuality
SIO_000300: 6.70763e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

GenotypeQuality
all individuals: 4269
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9766
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26828
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 4.770992366412214e-4
allele num: 4192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.96e0

DP
type: SiteQuality
SIO_000300: 6.43529e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 9992
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25992
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3504
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.300547890949898e-5
allele num: 30298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4104
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.399317406143345e-4
allele num: 9376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1428
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

FS
type: SiteQuality
SIO_000300: 1.934e0

QD
type: SiteQuality
SIO_000300: 1.861e1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.941e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.191e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.39216e5

GenotypeQuality
all individuals: 1979
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3721
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 442
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4018
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 4.343e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.034e-1

DP
type: SiteQuality
SIO_000300: 6.34823e5

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

GenotypeQuality
all individuals: 4708
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 196
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10471
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3850
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 8.722197993894462e-4
allele num: 9172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 6.28067e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.931e0

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.283e1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0