X-77369440-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369440
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369440
    reference: chr 0
allele count: 3
allele frequency: 3.431041778652058e-5
allele num: 87437
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.188+44A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.264+44A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.272+44A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+109A>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17183
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5994
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

X-77369440-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369440
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369440
    reference: chr 0
allele count: 1
allele frequency: 1.143680592884019e-5
allele num: 87437
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.188+44A>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.264+44A>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.272+44A>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+109A>C
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
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genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-77369442-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369442
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369442
    reference: chr 0
allele count: 58
allele frequency: 6.659089082538261e-4
allele num: 87099
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.188+46T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+111T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.272+46T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.264+46T>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 436
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  variant carriers: 4
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

X-77369471-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369471
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369471
    reference: chr 0
allele count: 2
allele frequency: 2.279254228016593e-5
allele num: 87748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+140C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.189-42C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.273-42C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.265-42C>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 780
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

X-77369475-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369475
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369475
    reference: chr 0
allele count: 1
allele frequency: 1.139666077839193e-5
allele num: 87745
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.273-38C>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.265-38C>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+144C>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.189-38C>A
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-77369475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369475
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369475
    reference: chr 0
allele count: 1
allele frequency: 1.139666077839193e-5
allele num: 87745
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.189-38C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.273-38C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.265-38C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+144C>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-77369478-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369478
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369478
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.189-35A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+147A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.273-35A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.265-35A>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

X-77369479-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369479
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369479
    reference: chr 0
allele count: 29
allele frequency: 3.304993959838625e-4
allele num: 87746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+148C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.273-34C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.265-34C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.189-34C>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

X-77369484-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369484
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369484
    reference: chr 0
allele count: 1
allele frequency: 1.139627114008296e-5
allele num: 87748
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.273-29C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+153C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.189-29C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.265-29C>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

X-77369486-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369486
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369486
    reference: chr 0
allele count: 134
allele frequency: 1.527100332771117e-3
allele num: 87748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.265-27A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.273-27A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.189-27A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+155A>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

X-77369499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369499
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369499
    reference: chr 0
allele count: 1
allele frequency: 1.13960113960114e-5
allele num: 87750
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.273-14C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+168C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.189-14C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.265-14C>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 692
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-77369506-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369506
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369506
    reference: chr 0
allele count: 1
allele frequency: 1.139614126656714e-5
allele num: 87749
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+175T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.189-7T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.273-7T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.265-7T>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 23
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  variant carriers: 0
hgvs: c.273-7T>G
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-77369518-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369518
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369518
    reference: chr 0
allele count: 3
allele frequency: 3.418803418803419e-5
allele num: 87750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+187T>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.194T>C
  hgvsp: ENSP00000444708.1:p.Val65Ala
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.270T>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.278T>C
  hgvsp: ENSP00000362413.4:p.Val93Ala
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 781
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val93Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-77369535-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369535
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369535
    reference: chr 0
allele count: 1
allele frequency: 1.139588152841563e-5
allele num: 87751
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.211T>C
  hgvsp: ENSP00000444708.1:p.Cys71Arg
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.287T>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+204T>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.295T>C
  hgvsp: ENSP00000362413.4:p.Cys99Arg
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 745
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  variant carriers: 0
hgvs: p.Cys99Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

X-77369543-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369543
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369543
    reference: chr 0
allele count: 3
allele frequency: 3.418764458524689e-5
allele num: 87751
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.295C>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.303C>G
  hgvsp: ENST00000373316.4:c.303C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.219C>G
  hgvsp: ENST00000537456.1:c.219C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+212C>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30
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  variant carriers: 0
hgvs: p.Gly101Gly
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

X-77369563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369563
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369563
    reference: chr 0
allele count: 1
allele frequency: 1.139614126656714e-5
allele num: 87749
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.315G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.239G>A
  hgvsp: ENSP00000444708.1:p.Cys80Tyr
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.323G>A
  hgvsp: ENSP00000362413.4:p.Cys108Tyr
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+232G>A
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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hgvs: p.Cys108Tyr
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum

X-77369577-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369577
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369577
    reference: chr 0
allele count: 1
allele frequency: 1.139562180210363e-5
allele num: 87753
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.253G>A
  hgvsp: ENSP00000444708.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.337G>A
  hgvsp: ENSP00000362413.4:p.Ala113Thr
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.329G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+246G>A
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20610
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1702
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genotype depth: GenotypeDepth
  all individuals: 1555
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
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genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 54638
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala113Thr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

X-77369586-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369586
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369586
    reference: chr 0
allele count: 2
allele frequency: 2.279176305683126e-5
allele num: 87751
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.346G>A
  hgvsp: ENSP00000362413.4:p.Val116Ile
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.262G>A
  hgvsp: ENSP00000444708.1:p.Val88Ile
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.338G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+255G>A
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2661
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genotype depth: GenotypeDepth
  all individuals: 20612
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
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genotype depth: GenotypeDepth
  all individuals: 4259
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 2046
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3234
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 743
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 451
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genotype quality: GenotypeQuality
  all individuals: 782
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genotype quality: GenotypeQuality
  all individuals: 54636
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 690
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val116Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-77369592-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369592
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369592
    reference: chr 0
allele count: 1
allele frequency: 1.139562180210363e-5
allele num: 87753
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.352C>A
  hgvsp: ENSP00000362413.4:p.Leu118Met
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+261C>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.344C>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.268C>A
  hgvsp: ENSP00000444708.1:p.Leu90Met
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20612
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 450
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu118Met
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

X-77369594-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369594
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369594
    reference: chr 0
allele count: 1
allele frequency: 1.139562180210363e-5
allele num: 87753
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.354G>T
  hgvsp: ENST00000373316.4:c.354G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+263G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.346G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.270G>T
  hgvsp: ENST00000537456.1:c.270G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20613
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu118Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-77369596-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369596
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369596
    reference: chr 0
allele count: 54
allele frequency: 6.153776025344441e-4
allele num: 87751
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.356T>C
  hgvsp: ENSP00000362413.4:p.Leu119Pro
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.348T>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.272T>C
  hgvsp: ENSP00000444708.1:p.Leu91Pro
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+265T>C
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu119Pro
num of homozygotes: 1
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

X-77369615-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369615
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369615
    reference: chr 0
allele count: 4
allele frequency: 4.558664311356772e-5
allele num: 87745
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.291T>A
  hgvsp: ENSP00000444708.1:p.His97Gln
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.367T>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+284T>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.375T>A
  hgvsp: ENSP00000362413.4:p.His125Gln
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 783
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  variant carriers: 0
hgvs: p.His125Gln
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

X-77369615-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369615
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369615
    reference: chr 0
allele count: 1
allele frequency: 1.139666077839193e-5
allele num: 87745
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+284T>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.291T>C
  hgvsp: ENST00000537456.1:c.291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.375T>C
  hgvsp: ENST00000373316.4:c.375T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.367T>C
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.His125His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum

X-77369618-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369618
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369618
    reference: chr 0
allele count: 1
allele frequency: 1.139731023478459e-5
allele num: 87740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+287G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.378G>A
  hgvsp: ENST00000373316.4:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.370G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.294G>A
  hgvsp: ENST00000537456.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Val126Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-77369619-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369619
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369619
    reference: chr 0
allele count: 1
allele frequency: 1.139744013494569e-5
allele num: 87739
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+288G>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.379G>C
  hgvsp: ENSP00000362413.4:p.Glu127Gln
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.295G>C
  hgvsp: ENSP00000444708.1:p.Glu99Gln
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.371G>C
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54638
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 737
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu127Gln
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-77369624-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369624
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369624
    reference: chr 0
allele count: 1
allele frequency: 1.139757003806788e-5
allele num: 87738
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.300A>G
  hgvsp: ENST00000537456.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+293A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.384A>G
  hgvsp: ENST00000373316.4:c.384A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.376A>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 54638
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
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genotype quality: GenotypeQuality
  all individuals: 14
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  variant carriers: 0
hgvs: p.Glu128Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-77369630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369630
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369630
    reference: chr 0
allele count: 25
allele frequency: 2.849619860710581e-4
allele num: 87731
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.306G>A
  hgvsp: ENST00000537456.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.382G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+299G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.390G>A
  hgvsp: ENST00000373316.4:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 54642
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  variant carriers: 25
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 70
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
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  variant carriers: 0
hgvs: p.Gly130Gly
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-77369645-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369645
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369645
    reference: chr 0
allele count: 2
allele frequency: 2.281178000319365e-5
allele num: 87674
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.405T>C
  hgvsp: ENST00000373316.4:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.321T>C
  hgvsp: ENST00000537456.1:c.321T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+314T>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.397T>C
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3203
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 530
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 15
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genotype quality: GenotypeQuality
  all individuals: 723
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genotype quality: GenotypeQuality
  all individuals: 146
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genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
hgvs: p.Ala135Ala
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

X-77369649-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369649
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369649
    reference: chr 0
allele count: 2
allele frequency: 2.281542322610084e-5
allele num: 87660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+318G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.409G>T
  hgvsp: ENSP00000362413.4:p.Gly137Trp
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.401G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.325G>T
  hgvsp: ENSP00000444708.1:p.Gly109Trp
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 690
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hgvs: p.Gly137Trp
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-77369653-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369653
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369653
    reference: chr 0
allele count: 1
allele frequency: 1.141213794992354e-5
allele num: 87626
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.413A>T
  hgvsp: ENSP00000362413.4:p.Asn138Ile
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+322A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.405A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.329A>T
  hgvsp: ENSP00000444708.1:p.Asn110Ile
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asn138Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

X-77369657-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369657
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369657
    reference: chr 0
allele count: 3
allele frequency: 3.424227551334878e-5
allele num: 87611
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.417G>A
  hgvsp: ENST00000373316.4:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.409G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.333G>A
  hgvsp: ENST00000537456.1:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+326G>A
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: c.417G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

X-77369661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369661
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369661
    reference: chr 0
allele count: 1
allele frequency: 1.141682840506907e-5
allele num: 87590
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.417+4G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.333+4G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+330G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.409+4G>A
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20621
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: c.417+4G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

X-77369676-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369676
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369676
    reference: chr 0
allele count: 1
allele frequency: 1.143092293271759e-5
allele num: 87482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.333+19A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.417+19A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+345A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.409+19A>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
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site quality: QD

X-77369678-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369678
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369678
    reference: chr 0
allele count: 1
allele frequency: 1.1433406126019e-5
allele num: 87463
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+347A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.417+21A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.409+21A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
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  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
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  hgvsc: ENST00000537456.1:c.333+21A>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
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X-77369687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369687
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369687
    reference: chr 0
allele count: 1
allele frequency: 1.143759078587686e-5
allele num: 87431
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.417+30G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.409+30G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
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  gene symbol: PGK1
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  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
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  ensembl gene: ENSG00000102144
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  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+356G>A
  variant of: http://identifiers.org/hgnc/8896
canonical: true
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filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
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site quality: FS
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X-77369688-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369688
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369688
    reference: chr 0
allele count: 1
allele frequency: 1.144099307819919e-5
allele num: 87405
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.409+31G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.417+31G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
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  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.333+31G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
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  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+357G>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: FS
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site quality: VQSLOD
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X-77369691-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369691
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369691
    reference: chr 0
allele count: 5
allele frequency: 5.720758343726044e-5
allele num: 87401
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.409+34A>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.417+34A>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.333+34A>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+360A>C
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

X-77369699-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369699
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369699
    reference: chr 0
allele count: 1
allele frequency: 1.145226124898361e-5
allele num: 87319
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.417+42A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.409+42A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.333+42A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
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  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+368A>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
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X-77369701-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369701
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369701
    reference: chr 0
allele count: 9
allele frequency: 1.030597288384023e-4
allele num: 87328
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
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  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.417+44T>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.409+44T>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
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  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
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  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+370T>A
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: Latino
population: European (Non-Finnish)
population: African
population: Other
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population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
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site quality: ReadPosRankSum
site quality: QD
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X-77369707-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077369707
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077369707
    reference: chr 0
allele count: 1
allele frequency: 1.145842882024017e-5
allele num: 87272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.207+376A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.333+50A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.417+50A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
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  ensembl gene: ENSG00000102144
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  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.409+50A>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
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filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: FS
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site quality: MQRankSum
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X-77372771-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372771
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372771
    reference: chr 0
allele count: 2
allele frequency: 2.636470293570967e-5
allele num: 75859
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-871G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.410-38G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
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  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.334-38G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
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  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.418-38G>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-77372772-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372772
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372772
    reference: chr 0
allele count: 8
allele frequency: 1.052216230435355e-4
allele num: 76030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.334-37G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-870G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.418-37G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.410-37G>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

X-77372777-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372777
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372777
    reference: chr 0
allele count: 2
allele frequency: 2.605354002475086e-5
allele num: 76765
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.418-32A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-865A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.334-32A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.410-32A>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-77372781-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372781
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372781
    reference: chr 0
allele count: 1
allele frequency: 1.290688969772064e-5
allele num: 77478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.334-28C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.418-28C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.410-28C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-861C>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-77372785-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372785
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372785
    reference: chr 0
allele count: 13
allele frequency: 1.657613546527937e-4
allele num: 78426
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.410-24T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-857T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.334-24T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.418-24T>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 586
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8222
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

X-77372795-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372795
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372795
    reference: chr 0
allele count: 1
allele frequency: 1.23872757903082e-5
allele num: 80728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.334-14G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.410-14G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.418-14G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-847G>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-77372805-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372805
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372805
    reference: chr 0
allele count: 2
allele frequency: 2.390771621540852e-5
allele num: 83655
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.334-4A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.418-4A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.410-4A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-837A>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 192
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  variant carriers: 0
hgvs: c.418-4A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-77372805-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372805
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372805
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 83655
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-837A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.418-4A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.334-4A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.410-4A>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: splice region
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33087
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.418-4A>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

X-77372809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372809
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372809
    reference: chr 0
allele count: 35
allele frequency: 4.140296918436151e-4
allele num: 84535
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-833G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.410G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.334G>A
  hgvsp: ENSP00000444708.1:p.Val112Ile
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.418G>A
  hgvsp: ENSP00000362413.4:p.Val140Ile
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39408
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6018
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val140Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-77372817-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372817
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372817
    reference: chr 0
allele count: 3
allele frequency: 3.506721215663355e-5
allele num: 85550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.342C>T
  hgvsp: ENST00000537456.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-825C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.426C>T
  hgvsp: ENST00000373316.4:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.418C>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 178
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6001
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala142Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-77372818-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372818
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372818
    reference: chr 0
allele count: 3
allele frequency: 3.498950314905528e-5
allele num: 85740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.419G>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.343G>C
  hgvsp: ENSP00000444708.1:p.Glu115Gln
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.427G>C
  hgvsp: ENSP00000362413.4:p.Glu143Gln
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-824G>C
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11865
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5999
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1278
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu143Gln
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS

X-77372832-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372832
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372832
    reference: chr 0
allele count: 4
allele frequency: 4.620751796317261e-5
allele num: 86566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.357A>G
  hgvsp: ENSP00000444708.1:p.Ile119Met
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.441A>G
  hgvsp: ENSP00000362413.4:p.Ile147Met
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-810A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.433A>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12419
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35272
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 216
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1279
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  variant carriers: 0
hgvs: p.Ile147Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

X-77372833-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372833
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372833
    reference: chr 0
allele count: 1
allele frequency: 1.155161260511967e-5
allele num: 86568
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.358G>C
  hgvsp: ENSP00000444708.1:p.Glu120Gln
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-809G>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.442G>C
  hgvsp: ENSP00000362413.4:p.Glu148Gln
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.434G>C
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu148Gln
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

X-77372850-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372850
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372850
    reference: chr 0
allele count: 1
allele frequency: 1.151569589350284e-5
allele num: 86838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-792A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.459A>G
  hgvsp: ENST00000373316.4:c.459A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.451A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.375A>G
  hgvsp: ENST00000537456.1:c.375A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6001
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser153Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

X-77372862-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372862
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372862
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 86886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.387A>T
  hgvsp: ENST00000537456.1:c.387A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.463A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-780A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.471A>T
  hgvsp: ENST00000373316.4:c.471A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6000
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu157Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

X-77372865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372865
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372865
    reference: chr 0
allele count: 1
allele frequency: 1.151503287541886e-5
allele num: 86843
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.474G>A
  hgvsp: ENST00000373316.4:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.390G>A
  hgvsp: ENST00000537456.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.466G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-777G>A
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12957
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly158Gly
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

X-77372868-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372868
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372868
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 86826
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.477T>A
  hgvsp: ENSP00000362413.4:p.Asp159Glu
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.393T>A
  hgvsp: ENSP00000444708.1:p.Asp131Glu
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-774T>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.469T>A
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp159Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

X-77372870-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372870
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372870
    reference: chr 0
allele count: 2
allele frequency: 2.304439502701955e-5
allele num: 86789
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.479T>G
  hgvsp: ENSP00000362413.4:p.Val160Gly
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.395T>G
  hgvsp: ENSP00000444708.1:p.Val132Gly
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.471T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-772T>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 202
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1825
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 41985
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val160Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff

X-77372873-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372873
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372873
    reference: chr 0
allele count: 1
allele frequency: 1.153296120311851e-5
allele num: 86708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.398A>G
  hgvsp: ENSP00000444708.1:p.Tyr133Cys
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.482A>G
  hgvsp: ENSP00000362413.4:p.Tyr161Cys
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.474A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-769A>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1487
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr161Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-77372879-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372879
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372879
    reference: chr 0
allele count: 2
allele frequency: 2.309148847734725e-5
allele num: 86612
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.488A>G
  hgvsp: ENSP00000362413.4:p.Asn163Ser
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.404A>G
  hgvsp: ENSP00000444708.1:p.Asn135Ser
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-763A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.480A>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 588
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  variant carriers: 0
hgvs: p.Asn163Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-77372897-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372897
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372897
    reference: chr 0
allele count: 2
allele frequency: 2.331464276138629e-5
allele num: 85783
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.506C>T
  hgvsp: ENSP00000362413.4:p.Ala169Val
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.498C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-745C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.422C>T
  hgvsp: ENSP00000444708.1:p.Ala141Val
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala169Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

X-77372906-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372906
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372906
    reference: chr 0
allele count: 1
allele frequency: 1.176055509820064e-5
allele num: 85030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-736C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.507C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.515C>T
  hgvsp: ENSP00000362413.4:p.Ala172Val
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.431C>T
  hgvsp: ENSP00000444708.1:p.Ala144Val
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12549
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5994
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4459
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36379
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala172Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-77372916-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372916
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372916
    reference: chr 0
allele count: 1
allele frequency: 1.187507421921387e-5
allele num: 84210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.513+4C>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-726C>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.521+4C>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.437+4C>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6244
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genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34039
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
hgvs: c.521+4C>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-77372930-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372930
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372930
    reference: chr 0
allele count: 4
allele frequency: 4.839392656221644e-5
allele num: 82655
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-712G>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.437+18G>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.521+18G>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.513+18G>C
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 328
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20828
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 320
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genotype quality: GenotypeQuality
  all individuals: 3871
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 314
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD

X-77372938-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372938
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372938
    reference: chr 0
allele count: 1
allele frequency: 1.223840411210378e-5
allele num: 81710
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.521+26C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-704C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.437+26C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.513+26C>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15922
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3803
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5994
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-77372948-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372948
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372948
    reference: chr 0
allele count: 1
allele frequency: 1.239695035021385e-5
allele num: 80665
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.521+36A>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.513+36A>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.437+36A>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-694A>C
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-77372957-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372957
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372957
    reference: chr 0
allele count: 1
allele frequency: 1.266736759434022e-5
allele num: 78943
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.521+45A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.437+45A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.513+45A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-685A>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
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site quality: QD
site quality: MQ
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X-77372963-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077372963
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077372963
    reference: chr 0
allele count: 1
allele frequency: 1.290489095367144e-5
allele num: 77490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.437+51T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.513+51T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.521+51T>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-679T>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

X-77373500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077373500
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077373500
    reference: chr 0
allele count: 1
allele frequency: 1.140172850204091e-5
allele num: 87706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-142G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.438-48G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.514-48G>A
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.522-48G>A
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

X-77373501-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077373501
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077373501
    reference: chr 0
allele count: 27
allele frequency: 3.078536896834808e-4
allele num: 87704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-141G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.514-47G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.522-47G>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.438-47G>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 232
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45407
  bin: 9.75e1
  variant carriers: 26
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-77373502-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077373502
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077373502
    reference: chr 0
allele count: 1
allele frequency: 1.140185850293598e-5
allele num: 87705
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.522-46A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.514-46A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-140A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.438-46A>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1897
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1387
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

X-77373516-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077373516
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077373516
    reference: chr 0
allele count: 1
allele frequency: 1.140042865611747e-5
allele num: 87716
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.522-32A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.514-32A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.438-32A>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-126A>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 45404
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

X-77373524-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077373524
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077373524
    reference: chr 0
allele count: 23905
allele frequency: 2.727355702860272e-1
allele num: 87649
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.522-24C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.438-24C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.514-24C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-118C>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 4.75e1
  variant carriers: 722
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 11877
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 834
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 71
genotype depth: GenotypeDepth
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  variant carriers: 19
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 993
genotype depth: GenotypeDepth
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  variant carriers: 190
genotype depth: GenotypeDepth
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  variant carriers: 951
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 867
genotype quality: GenotypeQuality
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  variant carriers: 21040
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 19
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
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  variant carriers: 66
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 47
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  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 7.25e1
  variant carriers: 41
num of homozygotes: 2241
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

X-77373529-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077373529
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077373529
    reference: chr 0
allele count: 1
allele frequency: 1.139782985319595e-5
allele num: 87736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-113T>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.438-19T>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.514-19T>C
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.522-19T>C
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2679
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4933
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-77373548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077373548
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077373548
    reference: chr 0
allele count: 3
allele frequency: 3.419193070435377e-5
allele num: 87740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.438C>T
  hgvsp: ENST00000537456.1:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-94C>T
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.522C>T
  hgvsp: ENST00000373316.4:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.514C>T
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7125
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41665
  bin: 9.75e1
  variant carriers: 3
hgvs: c.522C>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

X-77373552-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24077373552
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24077373552
    reference: chr 0
allele count: 1
allele frequency: 1.139731023478459e-5
allele num: 87740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102144
  ensembl transcript: ENST00000491291
  gene symbol: PGK1
  hgvsc: ENST00000491291.1:n.518A>G
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000444708
  ensembl transcript: ENST00000537456
  gene symbol: PGK1
  hgvsc: ENST00000537456.1:c.442A>G
  hgvsp: ENSP00000444708.1:p.Met148Val
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000362413
  ensembl transcript: ENST00000373316
  gene symbol: PGK1
  hgvsc: ENST00000373316.4:c.526A>G
  hgvsp: ENSP00000362413.4:p.Met176Val
  variant of: http://identifiers.org/hgnc/8896
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102144
  ensembl protein: ENSP00000405452
  ensembl transcript: ENST00000442431
  gene symbol: PGK1
  hgvsc: ENST00000442431.1:c.208-90A>G
  variant of: http://identifiers.org/hgnc/8896
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met176Val
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 20336
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 6.899724011039559e-4
allele num: 4348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8495
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.402e0

DP
type: SiteQuality
SIO_000300: 2.241032e6

MQ
type: SiteQuality
SIO_000300: 5.894e1

VQSLOD
type: SiteQuality
SIO_000300: -1.696e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e0

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

FS
type: SiteQuality
SIO_000300: 5.4375e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.857e0

GenotypeQuality
all individuals: 2207
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8495
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086550098067855e-5
allele num: 47926
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.857e0

MQ
type: SiteQuality
SIO_000300: 5.894e1

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

DP
type: SiteQuality
SIO_000300: 2.241032e6

FS
type: SiteQuality
SIO_000300: 5.4375e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.402e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.696e1

QD
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 391
bin: 4.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 48
allele frequency: 1.193139448173005e-2
allele num: 4023
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.623376623376623e-3
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.879032089692465e-4
allele num: 47897
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.39e-1

MQ
type: SiteQuality
SIO_000300: 5.889e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.005e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.642e1

FS
type: SiteQuality
SIO_000300: 7.3065e1

DP
type: SiteQuality
SIO_000300: 2.239716e6

QD
type: SiteQuality
SIO_000300: 8.6e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54643
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 531
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.167534903104813e-5
allele num: 47990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.744e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.334e1

DP
type: SiteQuality
SIO_000300: 4.916178e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

GenotypeQuality
all individuals: 54635
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083941149501938e-5
allele num: 47986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.417e0

DP
type: SiteQuality
SIO_000300: 4.916344e6

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 3.431e0

QD
type: SiteQuality
SIO_000300: 1.162e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

GenotypeQuality
all individuals: 987
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47986
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 4.916344e6

FS
type: SiteQuality
SIO_000300: 3.431e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.162e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.417e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
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GenotypeQuality
all individuals: 449
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47987
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.41e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

QD
type: SiteQuality
SIO_000300: 1.201e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.06e0

MQRankSum
type: SiteQuality
SIO_000300: -2.258e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.145e0

DP
type: SiteQuality
SIO_000300: 4.916508e6

VQSLOD
type: SiteQuality
SIO_000300: -5.278e0

GenotypeQuality
all individuals: 43
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.145922746781116e-4
allele num: 9320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 5.418134077979453e-4
allele num: 47987
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.154e0

QD
type: SiteQuality
SIO_000300: 1.827e1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

DP
type: SiteQuality
SIO_000300: 4.917199e6

MQ
type: SiteQuality
SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.092e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.246e1

GenotypeQuality
all individuals: 1610
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08385429690756e-5
allele num: 47988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.412e0

VQSLOD
type: SiteQuality
SIO_000300: -2.615e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 3.25e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.08e-2

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 4.917041e6

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54650
bin: 9.75e1
variant carriers: 131

GenotypeQuality
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bin: 7.75e1
variant carriers: 2

African
type: Population
allele count: 127
allele frequency: 1.492186582070262e-2
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47989
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 7.509118214975327e-4
allele num: 9322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.898e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 4.923284e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.21e-1

QD
type: SiteQuality
SIO_000300: 1.777e1

FS
type: SiteQuality
SIO_000300: 5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e1

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 780
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47989
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
SIO_000300: -1.883e0

QD
type: SiteQuality
SIO_000300: 1.042e1

FS
type: SiteQuality
SIO_000300: 5.171e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.654e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e0

DP
type: SiteQuality
SIO_000300: 4.919666e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.553e0

GenotypeQuality
all individuals: 449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47988
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.265e0

DP
type: SiteQuality
SIO_000300: 4.919372e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: -2.465e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

FS
type: SiteQuality
SIO_000300: 5.435e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

GenotypeQuality
all individuals: 450
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.251302354657221e-5
allele num: 47990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.919744e6

MQ
type: SiteQuality
SIO_000300: 5.849e1

QD
type: SiteQuality
SIO_000300: 1.45e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.468e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

GenotypeQuality
all individuals: 40
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07284626113078e-4
allele num: 9321
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.746e0

DP
type: SiteQuality
SIO_000300: 4.9198e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.982e0

QD
type: SiteQuality
SIO_000300: 1.348e1

MQ
type: SiteQuality
SIO_000300: 5.8e1

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

FS
type: SiteQuality
SIO_000300: 5.393e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.962962962962963e-4
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47991
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.982e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.06e-1

QD
type: SiteQuality
SIO_000300: 2.514e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.463e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

DP
type: SiteQuality
SIO_000300: 4.920052e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.38e-1

MQ
type: SiteQuality
SIO_000300: 5.824e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47992
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: -1.873e0

QD
type: SiteQuality
SIO_000300: 1.234e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.113e0

FS
type: SiteQuality
SIO_000300: 1.2885e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.841e1

DP
type: SiteQuality
SIO_000300: 4.920387e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.871e0

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47994
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.85e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
type: SiteQuality
SIO_000300: 7.63e-1

QD
type: SiteQuality
SIO_000300: 3.041e1

DP
type: SiteQuality
SIO_000300: 4.920403e6

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.975308641975309e-4
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

VQSLOD
type: SiteQuality
SIO_000300: -3.676e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.615e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.9205e6

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.318e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083593782556153e-5
allele num: 47994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.291e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.821e1

QD
type: SiteQuality
SIO_000300: 1.452e1

FS
type: SiteQuality
SIO_000300: 4.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.226e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.404e0

DP
type: SiteQuality
SIO_000300: 4.920513e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54637
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47995
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

MQ
type: SiteQuality
SIO_000300: 5.819e1

DP
type: SiteQuality
SIO_000300: 4.92055e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.075e-1

QD
type: SiteQuality
SIO_000300: 3.246e1

GenotypeQuality
all individuals: 449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.175502527330434e-4
allele num: 8507
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 27
allele frequency: 5.960264900662252e-3
allele num: 4530
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 5.417343834645997e-4
allele num: 47994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.459e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.819e1

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.63e-1

MQ
type: SiteQuality
SIO_000300: 5.809e1

DP
type: SiteQuality
SIO_000300: 4.926336e6

GenotypeQuality
all individuals: 737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54637
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.33472245374229e-5
allele num: 47992
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.388e-1

QD
type: SiteQuality
SIO_000300: 1.781e1

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

FS
type: SiteQuality
SIO_000300: 1.765e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 4.922534e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083680613435573e-5
allele num: 47992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 1.765e0

QD
type: SiteQuality
SIO_000300: 1.781e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.388e-1

DP
type: SiteQuality
SIO_000300: 4.922534e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54638
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 686
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

DP
type: SiteQuality
SIO_000300: 4.922242e6

VQSLOD
type: SiteQuality
SIO_000300: 6.56e-1

FS
type: SiteQuality
SIO_000300: 2.889e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.653e0

QD
type: SiteQuality
SIO_000300: 1.317e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072616110693983e-4
allele num: 9323
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

DP
type: SiteQuality
SIO_000300: 4.922289e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e-1

FS
type: SiteQuality
SIO_000300: 3.971e0

QD
type: SiteQuality
SIO_000300: 1.482e1

MQ
type: SiteQuality
SIO_000300: 5.927e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083767451552407e-5
allele num: 47990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.38e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

QD
type: SiteQuality
SIO_000300: 1.666e1

DP
type: SiteQuality
SIO_000300: 4.922391e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.07e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 8.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47989
num of homozygotes: 0

African
type: Population
allele count: 25
allele frequency: 2.943600612268927e-3
allele num: 8493
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.925e-1

QD
type: SiteQuality
SIO_000300: 1.432e1

DP
type: SiteQuality
SIO_000300: 4.92421e6

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

VQSLOD
type: SiteQuality
SIO_000300: 4.9e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.771e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.64e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.16831662533086e-5
allele num: 47981
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

QD
type: SiteQuality
SIO_000300: 1.355e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.43e-1

DP
type: SiteQuality
SIO_000300: 4.921005e6

FS
type: SiteQuality
SIO_000300: 1.775e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54637
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47977
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 3.391e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.920289e6

VQSLOD
type: SiteQuality
SIO_000300: 6.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.333e-1

GenotypeQuality
all individuals: 688
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47967
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.699e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 5.01e-1

FS
type: SiteQuality
SIO_000300: 3.94e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.919305e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47965
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.519433564326605e-4
allele num: 6638
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.548e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.376e-1

FS
type: SiteQuality
SIO_000300: 1.399e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

DP
type: SiteQuality
SIO_000300: 4.918637e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.215e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

QD
type: SiteQuality
SIO_000300: 2.407e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8379
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.765e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

QD
type: SiteQuality
SIO_000300: 2.055e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

DP
type: SiteQuality
SIO_000300: 4.917434e6

FS
type: SiteQuality
SIO_000300: 1.171e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-3

GenotypeQuality
all individuals: 984
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085679723021733e-5
allele num: 47946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8289
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.517e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

DP
type: SiteQuality
SIO_000300: 4.912731e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.92e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.275e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.968e0

QD
type: SiteQuality
SIO_000300: 3.072e1

GenotypeQuality
all individuals: 54634
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8277
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085940759282436e-5
allele num: 47940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.912385e6

FS
type: SiteQuality
SIO_000300: 3.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.918e1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.33e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

VQSLOD
type: SiteQuality
SIO_000300: 8.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.93e-1

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086375964948884e-5
allele num: 47930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.64e-1

DP
type: SiteQuality
SIO_000300: 4.910817e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.22e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

GenotypeQuality
all individuals: 984
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47925
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8233
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.58e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.910214e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 2.843e1

GenotypeQuality
all individuals: 640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.532389273877674e-4
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8231
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47923
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.893e-1

QD
type: SiteQuality
SIO_000300: 2.156e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.878e0

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.94e-2

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-1

DP
type: SiteQuality
SIO_000300: 4.910172e6

GenotypeQuality
all individuals: 525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072731173567904e-4
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47901
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

DP
type: SiteQuality
SIO_000300: 4.907577e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.492e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.292e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
all individuals: 667
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8177
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.355830069297981e-3
allele num: 6638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

QD
type: SiteQuality
SIO_000300: 1.383e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.617e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

DP
type: SiteQuality
SIO_000300: 4.907987e6

GenotypeQuality
all individuals: 112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088249420510786e-5
allele num: 47887
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.526e0

MQRankSum
type: SiteQuality
SIO_000300: -1.273e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.042e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 4.172e1

DP
type: SiteQuality
SIO_000300: 4.906716e6

QD
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
all individuals: 791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3369
bin: 6.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5719
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7325
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.882454898322877e-5
allele num: 40963
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.330897e6

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
SIO_000300: -7.032e-1

GenotypeQuality
all individuals: 3413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5996
bin: 9.75e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4137
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7349
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8439
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5731
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.949270241953169e-4
allele num: 41041
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8769
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e0

FS
type: SiteQuality
SIO_000300: 8.070000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

QD
type: SiteQuality
SIO_000300: 1.526e1

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

DP
type: SiteQuality
SIO_000300: 1.337296e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.818580446200549e-5
allele num: 41506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7415
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

FS
type: SiteQuality
SIO_000300: 5.587e0

VQSLOD
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.376977e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

QD
type: SiteQuality
SIO_000300: 1.541e1

GenotypeQuality
all individuals: 1311
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8557
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5851
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.383506137528304e-5
allele num: 41955
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8883
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.314e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.172e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

MQRankSum
type: SiteQuality
SIO_000300: -2.072e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.466e0

DP
type: SiteQuality
SIO_000300: 1.408344e6

GenotypeQuality
all individuals: 802
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.402472850359644e-5
allele num: 42542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7543
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.887237556027365e-3
allele num: 4239
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.733102253032929e-3
allele num: 577
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8651
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8942
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-2

FS
type: SiteQuality
SIO_000300: 2.365e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.97e-2

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

DP
type: SiteQuality
SIO_000300: 1.441935e6

MQRankSum
type: SiteQuality
SIO_000300: -2.33e-1

QD
type: SiteQuality
SIO_000300: 2.2e1

GenotypeQuality
all individuals: 1349
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5994
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7727
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8839
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6145
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.276556026043801e-5
allele num: 43926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4319
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9185
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.41e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.152e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.729e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

VQSLOD
type: SiteQuality
SIO_000300: -2.294e0

DP
type: SiteQuality
SIO_000300: 1.511631e6

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4349
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.37885886937864e-5
allele num: 45674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8007
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

QD
type: SiteQuality
SIO_000300: 6.88e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.205e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.576186e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 1778
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8007
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45674
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.576186e6

VQSLOD
type: SiteQuality
SIO_000300: -1.205e0

QD
type: SiteQuality
SIO_000300: 6.88e0

MQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

GenotypeQuality
all individuals: 254
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 240
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 8.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4436
num of homozygotes: 0

South Asian
type: Population
allele count: 34
allele frequency: 3.511308478777239e-3
allele num: 9683
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8107
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46213
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.555693839452396e-4
allele num: 6428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.188e-1

DP
type: SiteQuality
SIO_000300: 1.596734e6

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 4.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.416e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e-1

QD
type: SiteQuality
SIO_000300: 1.908e1

GenotypeQuality
all individuals: 40680
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6501
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.411352367926141e-5
allele num: 46792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8221
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.619274e6

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

FS
type: SiteQuality
SIO_000300: 2.842e0

QD
type: SiteQuality
SIO_000300: 1.204e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-1

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6511
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4469
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.045066991473812e-4
allele num: 9852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9141
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.623244e6

QD
type: SiteQuality
SIO_000300: 3.095e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.12e-2

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 7.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9961
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.443093549476529e-5
allele num: 47376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9195
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

FS
type: SiteQuality
SIO_000300: 6.512e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 1.722e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.24e-2

DP
type: SiteQuality
SIO_000300: 1.64056e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.881e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.81e-1

GenotypeQuality
all individuals: 6000
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8331
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.52114390021296e-4
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9195
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47379
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4499
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 1.640837e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.947e0

QD
type: SiteQuality
SIO_000300: 1.298e1

FS
type: SiteQuality
SIO_000300: 1.859e0

VQSLOD
type: SiteQuality
SIO_000300: -2.675e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.157e0

MQ
type: SiteQuality
SIO_000300: 5.814e1

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.194315060312911e-4
allele num: 8373
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9213
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.426e1

QD
type: SiteQuality
SIO_000300: 1.132e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: -1.206e0

DP
type: SiteQuality
SIO_000300: 1.647224e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

GenotypeQuality
all individuals: 808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47557
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9217
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6597
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4505
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8381
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.896e1

DP
type: SiteQuality
SIO_000300: 1.647698e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.761e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.950000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.356e0

QD
type: SiteQuality
SIO_000300: 2.686e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.1936022917164e-4
allele num: 8378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9993
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9213
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.73e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.169e0

FS
type: SiteQuality
SIO_000300: 4.951e0

DP
type: SiteQuality
SIO_000300: 1.646806e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.502e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42296
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4505
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9209
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.31e0

QD
type: SiteQuality
SIO_000300: 3.035e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.15e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.714e0

MQ
type: SiteQuality
SIO_000300: 5.893e1

DP
type: SiteQuality
SIO_000300: 1.646014e6

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4501
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8373
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.004409701342955e-4
allele num: 9978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6597
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.6448e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

QD
type: SiteQuality
SIO_000300: 3.169e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.61e-2

GenotypeQuality
all individuals: 807
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5996
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4499
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8361
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.003814495081309e-4
allele num: 9962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9197
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47469
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.971e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

FS
type: SiteQuality
SIO_000300: 2.136e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

QD
type: SiteQuality
SIO_000300: 3.124e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.13e-2

DP
type: SiteQuality
SIO_000300: 1.64239e6

MQ
type: SiteQuality
SIO_000300: 5.89e1

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.17556836723594e-4
allele num: 9193
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8351
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47419
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.705e1

DP
type: SiteQuality
SIO_000300: 1.638715e6

MQ
type: SiteQuality
SIO_000300: 5.93e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.25e-2

FS
type: SiteQuality
SIO_000300: 3.029e0

VQSLOD
type: SiteQuality
SIO_000300: -4.611e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

GenotypeQuality
all individuals: 5995
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8283
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.063725490196078e-4
allele num: 6528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.574e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.15e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 8.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.915e1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e0

DP
type: SiteQuality
SIO_000300: 1.613189e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.83e0

GenotypeQuality
all individuals: 584
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1406
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9721
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.151879666889028e-5
allele num: 46471
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.877e1

DP
type: SiteQuality
SIO_000300: 1.586681e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e-1

GenotypeQuality
all individuals: 5995
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45961
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.109139307897072e-4
allele num: 9016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6405
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.451e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.23e0

QD
type: SiteQuality
SIO_000300: 1.628e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.620000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.078e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

DP
type: SiteQuality
SIO_000300: 1.554359e6

GenotypeQuality
all individuals: 2485
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4347
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6249
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.511617414843221e-4
allele num: 8866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

FS
type: SiteQuality
SIO_000300: 1.2078e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.356e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

DP
type: SiteQuality
SIO_000300: 1.466622e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.944e1

GenotypeQuality
all individuals: 4511
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9405
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.248555303217683e-5
allele num: 44473
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.408467e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.738e1

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.443e1

GenotypeQuality
all individuals: 3976
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3371
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8661
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7955
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.282167145921767e-5
allele num: 43818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.009e1

MQRankSum
type: SiteQuality
SIO_000300: -9.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e-1

FS
type: SiteQuality
SIO_000300: 3.019e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.253e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.359342e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 10286
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2939
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7873
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.337650194024966e-5
allele num: 42778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4215
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.127e0

DP
type: SiteQuality
SIO_000300: 1.323973e6

FS
type: SiteQuality
SIO_000300: 3.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.529e1

MQ
type: SiteQuality
SIO_000300: 5.815e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 1205
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 565
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5755
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8325
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.387375558049037e-5
allele num: 41887
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

DP
type: SiteQuality
SIO_000300: 1.31788e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

QD
type: SiteQuality
SIO_000300: 1.414e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084505867884018e-5
allele num: 47973
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.57e-1

DP
type: SiteQuality
SIO_000300: 4.143599e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.45e-1

QD
type: SiteQuality
SIO_000300: 3.203e1

VQSLOD
type: SiteQuality
SIO_000300: -3.067e0

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 6.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

East Asian
type: Population
allele count: 27
allele frequency: 4.069329314242653e-3
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.14372e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.713e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

FS
type: SiteQuality
SIO_000300: 1.399e0

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

QD
type: SiteQuality
SIO_000300: 1.549e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45404
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2104
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.878494517435543e-5
allele num: 10123
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47975
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.334e1

DP
type: SiteQuality
SIO_000300: 4.143121e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.16e-2

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084114876411988e-5
allele num: 47982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.095e0

MQRankSum
type: SiteQuality
SIO_000300: -8.43e-1

FS
type: SiteQuality
SIO_000300: 6.387e0

QD
type: SiteQuality
SIO_000300: 1.046e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.198e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.349e0

DP
type: SiteQuality
SIO_000300: 4.144453e6

MQ
type: SiteQuality
SIO_000300: 5.994e1

GenotypeQuality
all individuals: 2001
bin: 8.25e1
variant carriers: 76

GenotypeQuality
all individuals: 2070
bin: 9.25e1
variant carriers: 95

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 24

Latino
type: Population
allele count: 3263
allele frequency: 3.511245023135693e-1
allele num: 9293
num of homozygotes: 472

South Asian
type: Population
allele count: 3653
allele frequency: 3.609327141586799e-1
allele num: 10121
num of homozygotes: 245

East Asian
type: Population
allele count: 2424
allele frequency: 3.658867924528302e-1
allele num: 6625
num of homozygotes: 300

European (Non-Finnish)
type: Population
allele count: 10376
allele frequency: 2.164191556816286e-1
allele num: 47944
num of homozygotes: 719

Other
type: Population
allele count: 165
allele frequency: 2.606635071090048e-1
allele num: 633
num of homozygotes: 9

African
type: Population
allele count: 3074
allele frequency: 3.614344503233392e-1
allele num: 8505
num of homozygotes: 429

European (Finnish)
type: Population
allele count: 950
allele frequency: 2.098056537102473e-1
allele num: 4528
num of homozygotes: 67

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.344e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.624e-1

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 2.05e1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e1

DP
type: SiteQuality
SIO_000300: 4.699233e6

GenotypeQuality
all individuals: 2701
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2775
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41667
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083724031589256e-5
allele num: 47991
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.275e1

FS
type: SiteQuality
SIO_000300: 3.644e0

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.607065e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.321e0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.85e-1

GenotypeQuality
all individuals: 2777
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.250911591273727e-5
allele num: 47993
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.823e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.44e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 5.27e-1

QD
type: SiteQuality
SIO_000300: 1.542e1

MQ
type: SiteQuality
SIO_000300: 5.935e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

DP
type: SiteQuality
SIO_000300: 3.607642e6