19-3204536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204536
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204536
    reference: chr 19
allele count: 6
allele frequency: 5.696815480146598e-5
allele num: 105322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.808-35C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.391-35C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.131-35C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1030-35C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.189-35C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.694-35C>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16156
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-3204537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204537
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204537
    reference: chr 19
allele count: 4
allele frequency: 3.796579282066858e-5
allele num: 105358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.189-34G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.808-34G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.694-34G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1030-34G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.391-34G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.131-34G>A
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23155
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3511
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38885
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-3204544-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204544
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204544
    reference: chr 19
allele count: 3
allele frequency: 2.83441355983447e-5
allele num: 105842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.131-27C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.391-27C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1030-27C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.694-27C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.189-27C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.808-27C>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

19-3204546-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204546
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204545
    reference: chr 19
allele count: 1
allele frequency: 9.440196356084207e-6
allele num: 105930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.808-24delT
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.694-24delT
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.391-24delT
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.131-24delT
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.189-24delT
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1030-24delT
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40008
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: CT
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

19-3204551-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204551
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204551
    reference: chr 19
allele count: 1
allele frequency: 9.419566323166482e-6
allele num: 106162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.391-20A>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.694-20A>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.131-20A>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.808-20A>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1030-20A>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.189-20A>G
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3915
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

19-3204556-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204556
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204556
    reference: chr 19
allele count: 2
allele frequency: 1.880512251537319e-5
allele num: 106354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.808-15C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.694-15C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.131-15C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1030-15C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.189-15C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.391-15C>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3834
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum

19-3204557-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204557
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204557
    reference: chr 19
allele count: 39
allele frequency: 3.662384494027496e-4
allele num: 106488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.694-14G>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.131-14G>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.808-14G>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.391-14G>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.189-14G>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1030-14G>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23862
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8835
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3887
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7333
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

19-3204562-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204562
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204562
    reference: chr 19
allele count: 2
allele frequency: 1.872939766257117e-5
allele num: 106784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.808-9C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1030-9C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.391-9C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.189-9C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.131-9C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.694-9C>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40701
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

19-3204563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204563
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204563
    reference: chr 19
allele count: 6
allele frequency: 5.613982559227516e-5
allele num: 106876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.131-8G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.189-8G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.808-8G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.391-8G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1030-8G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.694-8G>A
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1030-8G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

19-3204564-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204564
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204564
    reference: chr 19
allele count: 1
allele frequency: 9.349813938702619e-6
allele num: 106954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.694-7G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.391-7G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.189-7G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.131-7G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1030-7G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.808-7G>A
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7364
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40814
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1030-7G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP

19-3204567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204567
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204567
    reference: chr 19
allele count: 1
allele frequency: 9.335847788337658e-6
allele num: 107114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.694-4G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1030-4G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.189-4G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.131-4G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.808-4G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.391-4G>A
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7377
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1030-4G>A
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

19-3204573-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204573
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204573
    reference: chr 19
allele count: 1
allele frequency: 9.300422239169658e-6
allele num: 107522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.191G>T
  hgvsp: ENST00000592737.1:c.191G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.393G>T
  hgvsp: ENST00000587740.1:c.393G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1032G>T
  hgvsp: ENST00000246117.4:c.1032G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.810G>T
  hgvsp: ENST00000590671.1:c.810G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.133G>T
  hgvsp: ENST00000586904.1:c.133G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.696G>T
  hgvsp: ENST00000588428.1:c.696G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1032G>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

19-3204576-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204576
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204576
    reference: chr 19
allele count: 84
allele frequency: 7.791340481579045e-4
allele num: 107812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.813C>T
  hgvsp: ENST00000590671.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.136C>T
  hgvsp: ENST00000586904.1:c.136C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.699C>T
  hgvsp: ENST00000588428.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1035C>T
  hgvsp: ENST00000246117.4:c.1035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.396C>T
  hgvsp: ENST00000587740.1:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.194C>T
  hgvsp: ENST00000592737.1:c.194C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17497
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 24314
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 9.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala345Ala
num of homozygotes: 4
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

19-3204577-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204577
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204577
    reference: chr 19
allele count: 4
allele frequency: 3.707067524234954e-5
allele num: 107902
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1036G>A
  hgvsp: ENSP00000246117.3:p.Ala346Thr
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.397G>A
  hgvsp: ENSP00000466300.1:p.Ala133Thr
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.137G>A
  hgvsp: ENSP00000467693.1:p.Ala47Thr
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.700G>A
  hgvsp: ENSP00000467011.1:p.Ala234Thr
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.814G>A
  hgvsp: ENSP00000466678.1:p.Ala272Thr
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.195G>A
  hgvsp: ENSP00000466296.1:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7398
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4656
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala346Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

19-3204578-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204578
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204578
    reference: chr 19
allele count: 3
allele frequency: 2.777160630970895e-5
allele num: 108024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.701C>T
  hgvsp: ENSP00000467011.1:p.Ala234Val
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.815C>T
  hgvsp: ENSP00000466678.1:p.Ala272Val
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.138C>T
  hgvsp: ENSP00000467693.1:p.Ala47Val
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1037C>T
  hgvsp: ENSP00000246117.3:p.Ala346Val
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.196C>T
  hgvsp: ENSP00000466296.1:p.Ala66Val
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.398C>T
  hgvsp: ENSP00000466300.1:p.Ala133Val
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4681
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7405
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala346Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-3204579-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204579
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204579
    reference: chr 19
allele count: 2
allele frequency: 1.847814035995417e-5
allele num: 108236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.816G>A
  hgvsp: ENST00000590671.1:c.816G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.702G>A
  hgvsp: ENST00000588428.1:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.399G>A
  hgvsp: ENST00000587740.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.139G>A
  hgvsp: ENST00000586904.1:c.139G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1038G>A
  hgvsp: ENST00000246117.4:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.197G>A
  hgvsp: ENST00000592737.1:c.197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24434
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7406
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala346Ala
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

19-3204581-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204581
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204581
    reference: chr 19
allele count: 1
allele frequency: 9.209459957268105e-6
allele num: 108584
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1040A>G
  hgvsp: ENSP00000246117.3:p.His347Arg
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.141A>G
  hgvsp: ENSP00000467693.1:p.His48Arg
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.704A>G
  hgvsp: ENSP00000467011.1:p.His235Arg
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.401A>G
  hgvsp: ENSP00000466300.1:p.His134Arg
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.818A>G
  hgvsp: ENSP00000466678.1:p.His273Arg
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.199A>G
  hgvsp: ENSP00000466296.1:p.His67Arg
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41929
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His347Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-3204584-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204584
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204584
    reference: chr 19
allele count: 1
allele frequency: 9.178859251372239e-6
allele num: 108946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.202A>G
  hgvsp: ENSP00000466296.1:p.Gln68Arg
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.707A>G
  hgvsp: ENSP00000467011.1:p.Gln236Arg
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.404A>G
  hgvsp: ENSP00000466300.1:p.Gln135Arg
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.144A>G
  hgvsp: ENSP00000467693.1:p.Gln49Arg
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1043A>G
  hgvsp: ENSP00000246117.3:p.Gln348Arg
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.821A>G
  hgvsp: ENSP00000466678.1:p.Gln274Arg
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7417
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln348Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-3204597-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204597
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204597
    reference: chr 19
allele count: 2
allele frequency: 1.815804764671702e-5
allele num: 110144
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.215A>C
  hgvsp: ENST00000592737.1:c.215A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.834A>C
  hgvsp: ENST00000590671.1:c.834A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.417A>C
  hgvsp: ENST00000587740.1:c.417A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1056A>C
  hgvsp: ENST00000246117.4:c.1056A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.157A>C
  hgvsp: ENST00000586904.1:c.157A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.720A>C
  hgvsp: ENST00000588428.1:c.720A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7462
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4726
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42670
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val352Val
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-3204598-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204598
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204598
    reference: chr 19
allele count: 1
allele frequency: 9.071611299599035e-6
allele num: 110234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.721C>T
  hgvsp: ENSP00000467011.1:p.Arg241Trp
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.158C>T
  hgvsp: ENSP00000467693.1:p.Arg54Trp
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.835C>T
  hgvsp: ENSP00000466678.1:p.Arg279Trp
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1057C>T
  hgvsp: ENSP00000246117.3:p.Arg353Trp
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.418C>T
  hgvsp: ENSP00000466300.1:p.Arg140Trp
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.216C>T
  hgvsp: ENSP00000466296.1:p.Arg73Trp
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7470
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4642
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg353Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-3204599-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204599
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204599
    reference: chr 19
allele count: 1
allele frequency: 9.04649900488511e-6
allele num: 110540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.419G>A
  hgvsp: ENSP00000466300.1:p.Arg140Gln
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.836G>A
  hgvsp: ENSP00000466678.1:p.Arg279Gln
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1058G>A
  hgvsp: ENSP00000246117.3:p.Arg353Gln
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.159G>A
  hgvsp: ENSP00000467693.1:p.Arg54Gln
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.722G>A
  hgvsp: ENSP00000467011.1:p.Arg241Gln
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.217G>A
  hgvsp: ENSP00000466296.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42777
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg353Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-3204600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204600
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204600
    reference: chr 19
allele count: 1
allele frequency: 9.033913310567871e-6
allele num: 110694
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1059G>A
  hgvsp: ENST00000246117.4:c.1059G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.160G>A
  hgvsp: ENST00000586904.1:c.160G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.837G>A
  hgvsp: ENST00000590671.1:c.837G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.218G>A
  hgvsp: ENST00000592737.1:c.218G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.723G>A
  hgvsp: ENST00000588428.1:c.723G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.420G>A
  hgvsp: ENST00000587740.1:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24709
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg353Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

19-3204605-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204605
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204605
    reference: chr 19
allele count: 1
allele frequency: 8.989572096368214e-6
allele num: 111240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.842C>G
  hgvsp: ENSP00000466678.1:p.Ser281Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1064C>G
  hgvsp: ENSP00000246117.3:p.Ser355Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.223C>G
  hgvsp: ENSP00000466296.1:p.Ser75Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.425C>G
  hgvsp: ENSP00000466300.1:p.Ser142Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.165C>G
  hgvsp: ENSP00000467693.1:p.Ser56Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.728C>G
  hgvsp: ENSP00000467011.1:p.Ser243Cys
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7486
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser355Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

19-3204606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204606
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204606
    reference: chr 19
allele count: 2
allele frequency: 1.79620282722325e-5
allele num: 111346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.729C>T
  hgvsp: ENST00000588428.1:c.729C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.843C>T
  hgvsp: ENST00000590671.1:c.843C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.224C>T
  hgvsp: ENST00000592737.1:c.224C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1065C>T
  hgvsp: ENST00000246117.4:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.166C>T
  hgvsp: ENST00000586904.1:c.166C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.426C>T
  hgvsp: ENST00000587740.1:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7484
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser355Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

19-3204612-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204612
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204612
    reference: chr 19
allele count: 217
allele frequency: 1.936808282756158e-3
allele num: 112040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.735G>A
  hgvsp: ENST00000588428.1:c.735G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.849G>A
  hgvsp: ENST00000590671.1:c.849G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.230G>A
  hgvsp: ENST00000592737.1:c.230G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.432G>A
  hgvsp: ENST00000587740.1:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1071G>A
  hgvsp: ENST00000246117.4:c.1071G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.172G>A
  hgvsp: ENST00000586904.1:c.172G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8960
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 19248
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 24782
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val357Val
num of homozygotes: 3
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

19-3204614-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204614
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204614
    reference: chr 19
allele count: 2
allele frequency: 1.780119624038735e-5
allele num: 112352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.851A>T
  hgvsp: ENSP00000466678.1:p.His284Leu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.737A>T
  hgvsp: ENSP00000467011.1:p.His246Leu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.232A>T
  hgvsp: ENSP00000466296.1:p.His78Leu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1073A>T
  hgvsp: ENSP00000246117.3:p.His358Leu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.434A>T
  hgvsp: ENSP00000466300.1:p.His145Leu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.174A>T
  hgvsp: ENSP00000467693.1:p.His59Leu
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His358Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-3204625-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204625
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204625
    reference: chr 19
allele count: 1
allele frequency: 8.795848359574281e-6
allele num: 113690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.185A>C
  hgvsp: ENSP00000467693.1:p.Asn63His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.445A>C
  hgvsp: ENSP00000466300.1:p.Asn149His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.243A>C
  hgvsp: ENSP00000466296.1:p.Asn82His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1084A>C
  hgvsp: ENSP00000246117.3:p.Asn362His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.862A>C
  hgvsp: ENSP00000466678.1:p.Asn288His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.748A>C
  hgvsp: ENSP00000467011.1:p.Asn250His
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19846
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn362His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

19-3204627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204627
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204627
    reference: chr 19
allele count: 1
allele frequency: 8.785647765809773e-6
allele num: 113822
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1086C>T
  hgvsp: ENST00000246117.4:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.447C>T
  hgvsp: ENST00000587740.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.864C>T
  hgvsp: ENST00000590671.1:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.245C>T
  hgvsp: ENST00000592737.1:c.245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.750C>T
  hgvsp: ENST00000588428.1:c.750C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.187C>T
  hgvsp: ENST00000586904.1:c.187C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7540
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn362Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/19-3204632-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204632
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204632
    reference: chr 19
allele count: 1
allele frequency: 8.77654906090925e-6
allele num: 113940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.192C>A
  hgvsp: ENSP00000467693.1:p.Ala65Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.755C>A
  hgvsp: ENSP00000467011.1:p.Ala252Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1091C>A
  hgvsp: ENSP00000246117.3:p.Ala364Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.452C>A
  hgvsp: ENSP00000466300.1:p.Ala151Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.250C>A
  hgvsp: ENSP00000466296.1:p.Ala84Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.869C>A
  hgvsp: ENSP00000466678.1:p.Ala290Glu
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3672
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala364Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

19-3204632-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204632
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204632
    reference: chr 19
allele count: 2
allele frequency: 1.75530981218185e-5
allele num: 113940
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.192C>T
  hgvsp: ENSP00000467693.1:p.Ala65Val
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.250C>T
  hgvsp: ENSP00000466296.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.755C>T
  hgvsp: ENSP00000467011.1:p.Ala252Val
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1091C>T
  hgvsp: ENSP00000246117.3:p.Ala364Val
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.869C>T
  hgvsp: ENSP00000466678.1:p.Ala290Val
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.452C>T
  hgvsp: ENSP00000466300.1:p.Ala151Val
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43919
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala364Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

19-3204640-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204640
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204640
    reference: chr 19
allele count: 1
allele frequency: 8.749518776467294e-6
allele num: 114292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.763G>A
  hgvsp: ENSP00000467011.1:p.Val255Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.200G>A
  hgvsp: ENSP00000467693.1:p.Val68Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.877G>A
  hgvsp: ENSP00000466678.1:p.Val293Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1099G>A
  hgvsp: ENSP00000246117.3:p.Val367Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.258G>A
  hgvsp: ENSP00000466296.1:p.Val87Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.460G>A
  hgvsp: ENSP00000466300.1:p.Val154Met
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7445
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val367Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

19-3204640-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204640
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204640
    reference: chr 19
allele count: 1
allele frequency: 8.749518776467294e-6
allele num: 114292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.763G>C
  hgvsp: ENSP00000467011.1:p.Val255Leu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.200G>C
  hgvsp: ENSP00000467693.1:p.Val68Leu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.258G>C
  hgvsp: ENSP00000466296.1:p.Val87Leu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1099G>C
  hgvsp: ENSP00000246117.3:p.Val367Leu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.460G>C
  hgvsp: ENSP00000466300.1:p.Val154Leu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.877G>C
  hgvsp: ENSP00000466678.1:p.Val293Leu
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3875
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val367Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

19-3204641-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204641
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204641
    reference: chr 19
allele count: 1
allele frequency: 8.743245842586601e-6
allele num: 114374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.259T>A
  hgvsp: ENSP00000466296.1:p.Val87Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.878T>A
  hgvsp: ENSP00000466678.1:p.Val293Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.201T>A
  hgvsp: ENSP00000467693.1:p.Val68Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.461T>A
  hgvsp: ENSP00000466300.1:p.Val154Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1100T>A
  hgvsp: ENSP00000246117.3:p.Val367Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.764T>A
  hgvsp: ENSP00000467011.1:p.Val255Glu
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7446
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val367Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-3204657-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204657
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204657
    reference: chr 19
allele count: 2
allele frequency: 1.816299471456854e-5
allele num: 110114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.217C>T
  hgvsp: ENST00000586904.1:c.217C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.780C>T
  hgvsp: ENST00000588428.1:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.477C>T
  hgvsp: ENST00000587740.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1116C>T
  hgvsp: ENST00000246117.4:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.894C>T
  hgvsp: ENST00000590671.1:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.275C>T
  hgvsp: ENST00000592737.1:c.275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His372His
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

19-3204660-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204660
    reference: chr 19
allele count: 1
allele frequency: 9.141770578125571e-6
allele num: 109388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.783G>A
  hgvsp: ENST00000588428.1:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1119G>A
  hgvsp: ENST00000246117.4:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.220G>A
  hgvsp: ENST00000586904.1:c.220G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.897G>A
  hgvsp: ENST00000590671.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.480G>A
  hgvsp: ENST00000587740.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.278G>A
  hgvsp: ENST00000592737.1:c.278G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6503
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu373Glu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

19-3204662-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204662
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204662
    reference: chr 19
allele count: 1
allele frequency: 9.238728750923873e-6
allele num: 108240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.222G>C
  hgvsp: ENSP00000467693.1:p.Arg75Pro
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.785G>C
  hgvsp: ENSP00000467011.1:p.Arg262Pro
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.482G>C
  hgvsp: ENSP00000466300.1:p.Arg161Pro
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.280G>C
  hgvsp: ENSP00000466296.1:p.Arg94Pro
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.899G>C
  hgvsp: ENSP00000466678.1:p.Arg300Pro
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1121G>C
  hgvsp: ENSP00000246117.3:p.Arg374Pro
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg374Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-3204666-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204666
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204666
    reference: chr 19
allele count: 2
allele frequency: 1.929310078715851e-5
allele num: 103664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.226C>T
  hgvsp: ENST00000586904.1:c.226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.903C>T
  hgvsp: ENST00000590671.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.284C>T
  hgvsp: ENST00000592737.1:c.284C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.789C>T
  hgvsp: ENST00000588428.1:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.486C>T
  hgvsp: ENST00000587740.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1125C>T
  hgvsp: ENST00000246117.4:c.1125C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6374
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14143
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe375Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

19-3204667-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204667
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204667
    reference: chr 19
allele count: 2
allele frequency: 1.933861922258751e-5
allele num: 103420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.487G>A
  hgvsp: ENSP00000466300.1:p.Ala163Thr
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.904G>A
  hgvsp: ENSP00000466678.1:p.Ala302Thr
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.285G>A
  hgvsp: ENSP00000466296.1:p.Ala96Thr
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.790G>A
  hgvsp: ENSP00000467011.1:p.Ala264Thr
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.227G>A
  hgvsp: ENSP00000467693.1:p.Ala77Thr
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1126G>A
  hgvsp: ENSP00000246117.3:p.Ala376Thr
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14198
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4563
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala376Thr
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/19-3204672-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204672
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204672
    reference: chr 19
allele count: 12
allele frequency: 1.187789523696401e-4
allele num: 101028
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1131C>A
  hgvsp: ENST00000246117.4:c.1131C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.290C>A
  hgvsp: ENST00000592737.1:c.290C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.795C>A
  hgvsp: ENST00000588428.1:c.795C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.492C>A
  hgvsp: ENST00000587740.1:c.492C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.232C>A
  hgvsp: ENST00000586904.1:c.232C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.909C>A
  hgvsp: ENST00000590671.1:c.909C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18046
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26954
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14610
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile377Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

19-3204673-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204673
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204673
    reference: chr 19
allele count: 1
allele frequency: 9.907660603178378e-6
allele num: 100932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.233C>T
  hgvsp: ENSP00000467693.1:p.Arg79Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.910C>T
  hgvsp: ENSP00000466678.1:p.Arg304Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.291C>T
  hgvsp: ENSP00000466296.1:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1132C>T
  hgvsp: ENSP00000246117.3:p.Arg378Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.796C>T
  hgvsp: ENSP00000467011.1:p.Arg266Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.493C>T
  hgvsp: ENSP00000466300.1:p.Arg165Cys
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg378Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-3204677-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204677
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204677
    reference: chr 19
allele count: 1
allele frequency: 1.011777085272573e-5
allele num: 98836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.295G>A
  hgvsp: ENSP00000466296.1:p.Arg99Gln
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.914G>A
  hgvsp: ENSP00000466678.1:p.Arg305Gln
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1136G>A
  hgvsp: ENSP00000246117.3:p.Arg379Gln
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.497G>A
  hgvsp: ENSP00000466300.1:p.Arg166Gln
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.237G>A
  hgvsp: ENSP00000467693.1:p.Arg80Gln
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.800G>A
  hgvsp: ENSP00000467011.1:p.Arg267Gln
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3594
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg379Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

19-3204684-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204684
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204684
    reference: chr 19
allele count: 1
allele frequency: 1.058537101725416e-5
allele num: 94470
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.504C>G
  hgvsp: ENST00000587740.1:c.504C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.244C>G
  hgvsp: ENST00000586904.1:c.244C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.302C>G
  hgvsp: ENST00000592737.1:c.302C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1143C>G
  hgvsp: ENST00000246117.4:c.1143C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.921C>G
  hgvsp: ENST00000590671.1:c.921C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.807C>G
  hgvsp: ENST00000588428.1:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19032
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro381Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD

19-3204684-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204684
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204684
    reference: chr 19
allele count: 18
allele frequency: 1.905366783105748e-4
allele num: 94470
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1143C>T
  hgvsp: ENST00000246117.4:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.302C>T
  hgvsp: ENST00000592737.1:c.302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.807C>T
  hgvsp: ENST00000588428.1:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.504C>T
  hgvsp: ENST00000587740.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.921C>T
  hgvsp: ENST00000590671.1:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.244C>T
  hgvsp: ENST00000586904.1:c.244C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11470
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14693
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19032
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro381Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-3204692-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204692
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204692
    reference: chr 19
allele count: 1
allele frequency: 1.102535832414553e-5
allele num: 90700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.512C>T
  hgvsp: ENSP00000466300.1:p.Thr171Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1151C>T
  hgvsp: ENSP00000246117.3:p.Thr384Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.929C>T
  hgvsp: ENSP00000466678.1:p.Thr310Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.310C>T
  hgvsp: ENSP00000466296.1:p.Thr104Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.252C>T
  hgvsp: ENSP00000467693.1:p.Thr85Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.815C>T
  hgvsp: ENSP00000467011.1:p.Thr272Met
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21450
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr384Met
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

19-3204693-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204693
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204693
    reference: chr 19
allele count: 1
allele frequency: 1.106610893477635e-5
allele num: 90366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.930G>A
  hgvsp: ENST00000590671.1:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.253G>A
  hgvsp: ENST00000586904.1:c.253G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1152G>A
  hgvsp: ENST00000246117.4:c.1152G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.513G>A
  hgvsp: ENST00000587740.1:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.816G>A
  hgvsp: ENST00000588428.1:c.816G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.311G>A
  hgvsp: ENST00000592737.1:c.311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13017
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10920
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21485
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2493
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr384Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-3204695-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204695
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204695
    reference: chr 19
allele count: 1
allele frequency: 1.121478557329984e-5
allele num: 89168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.932T>C
  hgvsp: ENSP00000466678.1:p.Leu311Pro
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1154T>C
  hgvsp: ENSP00000246117.3:p.Leu385Pro
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.818T>C
  hgvsp: ENSP00000467011.1:p.Leu273Pro
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.255T>C
  hgvsp: ENSP00000467693.1:p.Leu86Pro
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.515T>C
  hgvsp: ENSP00000466300.1:p.Leu172Pro
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.313T>C
  hgvsp: ENSP00000466296.1:p.Leu105Pro
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13339
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu385Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-3204715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204715
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204715
    reference: chr 19
allele count: 5
allele frequency: 6.411078343377356e-5
allele num: 77990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.275C>T
  hgvsp: ENSP00000467693.1:p.Arg93Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1174C>T
  hgvsp: ENSP00000246117.3:p.Arg392Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.535C>T
  hgvsp: ENSP00000466300.1:p.Arg179Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.333C>T
  hgvsp: ENSP00000466296.1:p.Arg112Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.952C>T
  hgvsp: ENSP00000466678.1:p.Arg318Cys
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.838C>T
  hgvsp: ENSP00000467011.1:p.Arg280Cys
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17160
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17667
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10200
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg392Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

19-3204716-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204716
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204716
    reference: chr 19
allele count: 4
allele frequency: 5.216892297258523e-5
allele num: 76674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.839G>A
  hgvsp: ENSP00000467011.1:p.Arg280His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.276G>A
  hgvsp: ENSP00000467693.1:p.Arg93His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.536G>A
  hgvsp: ENSP00000466300.1:p.Arg179His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1175G>A
  hgvsp: ENSP00000246117.3:p.Arg392His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.334G>A
  hgvsp: ENSP00000466296.1:p.Arg112His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.953G>A
  hgvsp: ENSP00000466678.1:p.Arg318His
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17714
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31096
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2525
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg392His
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-3204720-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204720
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204720
    reference: chr 19
allele count: 3
allele frequency: 4.073209145712269e-5
allele num: 73652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.540C>T
  hgvsp: ENST00000587740.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.843C>T
  hgvsp: ENST00000588428.1:c.843C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1179C>T
  hgvsp: ENST00000246117.4:c.1179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.957C>T
  hgvsp: ENST00000590671.1:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.338C>T
  hgvsp: ENST00000592737.1:c.338C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.280C>T
  hgvsp: ENST00000586904.1:c.280C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7922
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3919
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp393Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

19-3204721-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204721
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204721
    reference: chr 19
allele count: 5
allele frequency: 6.911805363560962e-5
allele num: 72340
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1180G>A
  hgvsp: ENSP00000246117.3:p.Gly394Ser
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.541G>A
  hgvsp: ENSP00000466300.1:p.Gly181Ser
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.958G>A
  hgvsp: ENSP00000466678.1:p.Gly320Ser
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.281G>A
  hgvsp: ENSP00000467693.1:p.Gly95Ser
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.339G>A
  hgvsp: ENSP00000466296.1:p.Gly114Ser
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.844G>A
  hgvsp: ENSP00000467011.1:p.Gly282Ser
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19653
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18897
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2590
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 7.5e0
  variant carriers: 1
hgvs: p.Gly394Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-3204727-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204727
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204727
    reference: chr 19
allele count: 1
allele frequency: 1.470934337491174e-5
allele num: 67984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.850C>G
  hgvsp: ENSP00000467011.1:p.Arg284Gly
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.287C>G
  hgvsp: ENSP00000467693.1:p.Arg97Gly
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.964C>G
  hgvsp: ENSP00000466678.1:p.Arg322Gly
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.345C>G
  hgvsp: ENSP00000466296.1:p.Arg116Gly
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1186C>G
  hgvsp: ENSP00000246117.3:p.Arg396Gly
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.547C>G
  hgvsp: ENSP00000466300.1:p.Arg183Gly
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4940
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg396Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-3204728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204728
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204728
    reference: chr 19
allele count: 1
allele frequency: 1.490535102101654e-5
allele num: 67090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.346G>A
  hgvsp: ENSP00000466296.1:p.Arg116His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.288G>A
  hgvsp: ENSP00000467693.1:p.Arg97His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1187G>A
  hgvsp: ENSP00000246117.3:p.Arg396His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.965G>A
  hgvsp: ENSP00000466678.1:p.Arg322His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.851G>A
  hgvsp: ENSP00000467011.1:p.Arg284His
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.548G>A
  hgvsp: ENSP00000466300.1:p.Arg183His
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19599
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg396His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

19-3204732-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204732
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204732
    reference: chr 19
allele count: 243
allele frequency: 3.773877931355801e-3
allele num: 64390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.855C>T
  hgvsp: ENST00000588428.1:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1191C>T
  hgvsp: ENST00000246117.4:c.1191C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.552C>T
  hgvsp: ENST00000587740.1:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.969C>T
  hgvsp: ENST00000590671.1:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.350C>T
  hgvsp: ENST00000592737.1:c.350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.292C>T
  hgvsp: ENST00000586904.1:c.292C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 2.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20095
  bin: 1.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 21827
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 1.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5920
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8033
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 9.75e1
  variant carriers: 239
genotype quality: GenotypeQuality
  all individuals: 2450
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Ser397Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

19-3204738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204738
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204738
    reference: chr 19
allele count: 2
allele frequency: 3.481045706130121e-5
allele num: 57454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.558C>T
  hgvsp: ENST00000587740.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.861C>T
  hgvsp: ENST00000588428.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.356C>T
  hgvsp: ENST00000592737.1:c.356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1197C>T
  hgvsp: ENST00000246117.4:c.1197C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.975C>T
  hgvsp: ENST00000590671.1:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.298C>T
  hgvsp: ENST00000586904.1:c.298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20753
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8014
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8708
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4605
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37687
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile399Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-3204744-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204744
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204744
    reference: chr 19
allele count: 50
allele frequency: 9.708737864077669e-4
allele num: 51500
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1203C>T
  hgvsp: ENST00000246117.4:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.304C>T
  hgvsp: ENST00000586904.1:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.981C>T
  hgvsp: ENST00000590671.1:c.981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.362C>T
  hgvsp: ENST00000592737.1:c.362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.867C>T
  hgvsp: ENST00000588428.1:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.564C>T
  hgvsp: ENST00000587740.1:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22909
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19930
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp401Asp
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

19-3204745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204745
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204745
    reference: chr 19
allele count: 3
allele frequency: 6.015881928290687e-5
allele num: 49868
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1204G>A
  hgvsp: ENSP00000246117.3:p.Val402Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.982G>A
  hgvsp: ENSP00000466678.1:p.Val328Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.363G>A
  hgvsp: ENSP00000466296.1:p.Val122Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.305G>A
  hgvsp: ENSP00000467693.1:p.Val103Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.565G>A
  hgvsp: ENSP00000466300.1:p.Val189Met
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.868G>A
  hgvsp: ENSP00000467011.1:p.Val290Met
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19653
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12003
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val402Met
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

19-3204746-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204746
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204746
    reference: chr 19
allele count: 1
allele frequency: 2.0965239632689e-5
allele num: 47698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.364T>A
  hgvsp: ENSP00000466296.1:p.Val122Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1205T>A
  hgvsp: ENSP00000246117.3:p.Val402Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.566T>A
  hgvsp: ENSP00000466300.1:p.Val189Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.306T>A
  hgvsp: ENSP00000467693.1:p.Val103Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.869T>A
  hgvsp: ENSP00000467011.1:p.Val290Glu
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.983T>A
  hgvsp: ENSP00000466678.1:p.Val328Glu
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val402Glu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

19-3204752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204752
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204752
    reference: chr 19
allele count: 1
allele frequency: 2.779012894619831e-5
allele num: 35984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+3G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+3G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+3G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+3G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+3G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+3G>A
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17814
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2525
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1208+3G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP

19-3204755-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204755
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204755
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 32218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+6C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+6C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+6C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+6C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+6C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+6C>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23467
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28892
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2462
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1208+6C>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

19-3204756-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204756
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204756
    reference: chr 19
allele count: 16
allele frequency: 4.961855734044533e-4
allele num: 32246
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+7G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+7G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+7G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+7G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+7G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+7G>A
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18723
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23614
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13889
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 396
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29485
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 1.25e1
  variant carriers: 1
hgvs: c.1208+7G>A
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

19-3204757-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204757
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204757
    reference: chr 19
allele count: 13
allele frequency: 4.131443462785228e-4
allele num: 31466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+8C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+8C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+8C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+8C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+8C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+8C>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19243
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23487
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13595
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20060
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1208+8C>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-3204757-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204757
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204757
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 31466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+8C>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+8C>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+8C>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+8C>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+8C>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+8C>A
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: splice region
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 23487
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20060
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1208+8C>A
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

19-3204758-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204758
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204758
    reference: chr 19
allele count: 62
allele frequency: 2.170716336391009e-3
allele num: 28562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+9G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+9G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+9G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+9G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+9G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+9G>A
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20855
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22970
  bin: 7.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 12497
  bin: 1.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 21563
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26722
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 6.25e1
  variant carriers: 4
num of homozygotes: 3
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

19-3204760-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204760
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204760
    reference: chr 19
allele count: 1
allele frequency: 3.775864673010119e-5
allele num: 26484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+11C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+11C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+11C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+11C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+11C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+11C>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22713
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22798
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

19-3204762-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204762
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204762
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 22258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+13G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+13G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+13G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+13G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+13G>A
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+13G>A
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22026
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24713
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-3204769-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204769
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204769
    reference: chr 19
allele count: 1
allele frequency: 6.513809275664408e-5
allele num: 15352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+20C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+20C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+20C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+20C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+20C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+20C>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27896
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17576
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

19-3204770-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204770
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204770
    reference: chr 19
allele count: 2
allele frequency: 1.288493750805309e-4
allele num: 15522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+21C>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+21C>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+21C>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+21C>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+21C>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+21C>G
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28090
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

19-3204771-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204771
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204771
    reference: chr 19
allele count: 1
allele frequency: 6.521455588887439e-5
allele num: 15334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+22C>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+22C>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+22C>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+22C>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+22C>G
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+22C>G
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21128
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 25
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19071
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genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 915
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28261
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-3204771-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204771
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204771
    reference: chr 19
allele count: 3
allele frequency: 1.956436676666232e-4
allele num: 15334
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+22C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+22C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+22C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+22C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+22C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+22C>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28155
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21128
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28261
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

19-3204776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204776
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204776
    reference: chr 19
allele count: 2
allele frequency: 1.67000668002672e-4
allele num: 11976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+27C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+27C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+27C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+27C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+27C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+27C>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19749
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14965
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4436
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30052
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

19-3204779-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204779
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204779
    reference: chr 19
allele count: 1
allele frequency: 9.150805270863836e-5
allele num: 10928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+30C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+30C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+30C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+30C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+30C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+30C>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30529
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4730
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

19-3204789-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204789
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204790
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 6952
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+42dupC
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+42dupC
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+42dupC
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+42dupC
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+42dupC
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+42dupC
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32491
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19050
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4410
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29872
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6589
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-3204790-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3204790
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3204790
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 6954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467011
  ensembl transcript: ENST00000588428
  gene symbol: NCLN
  hgvsc: ENST00000588428.1:c.872+41C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000246117
  ensembl transcript: ENST00000246117
  gene symbol: NCLN
  hgvsc: ENST00000246117.4:c.1208+41C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466300
  ensembl transcript: ENST00000587740
  gene symbol: NCLN
  hgvsc: ENST00000587740.1:c.569+41C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466678
  ensembl transcript: ENST00000590671
  gene symbol: NCLN
  hgvsc: ENST00000590671.1:c.986+41C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000467693
  ensembl transcript: ENST00000586904
  gene symbol: NCLN
  hgvsc: ENST00000586904.1:c.309+41C>T
  variant of: http://identifiers.org/hgnc/26923
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125912
  ensembl protein: ENSP00000466296
  ensembl transcript: ENST00000592737
  gene symbol: NCLN
  hgvsc: ENST00000592737.1:c.367+41C>T
  variant of: http://identifiers.org/hgnc/26923
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 19041
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32520
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 3366
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7187
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 222
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.019744762822056e-4
allele num: 8306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.653767281868095e-5
allele num: 60468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.397166e6

FS
type: SiteQuality
SIO_000300: 1.372e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.228e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.195e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.14e-1

GenotypeQuality
all individuals: 836
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 7209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.653165812530997e-5
allele num: 60490
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.089324618736383e-4
allele num: 9180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.774622892635315e-4
allele num: 11270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8998
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.401508e6

FS
type: SiteQuality
SIO_000300: 1.482e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.372e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

QD
type: SiteQuality
SIO_000300: 1.098e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

GenotypeQuality
all individuals: 3780
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.846426043878273e-5
allele num: 11304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.294024639304302e-5
allele num: 60716
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.981e0

FS
type: SiteQuality
SIO_000300: 5.106e0

DP
type: SiteQuality
SIO_000300: 1.415871e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

GenotypeQuality
all individuals: 552
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7319
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.197891710589363e-4
allele num: 8348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.637e0

DP
type: SiteQuality
SIO_000300: 1.417712e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQ
type: SiteQuality
SIO_000300: 5.941e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

QD
type: SiteQuality
SIO_000300: 1.713e1

GenotypeQuality
all individuals: 40419
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7336
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9332
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.84016973125884e-5
allele num: 11312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

DP
type: SiteQuality
SIO_000300: 1.422851e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-2

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.071e0

QD
type: SiteQuality
SIO_000300: 4.23e0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.174858634188778e-4
allele num: 9196
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.352e0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

DP
type: SiteQuality
SIO_000300: 1.42749e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.3507e1

QD
type: SiteQuality
SIO_000300: 1.902e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.447e0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40418
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

East Asian
type: Population
allele count: 39
allele frequency: 4.657272510150466e-3
allele num: 8374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9386
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

QD
type: SiteQuality
SIO_000300: 1.077e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

DP
type: SiteQuality
SIO_000300: 1.430159e6

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7344
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61098
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.061796559779146e-4
allele num: 9418
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.06700810926163e-4
allele num: 9372
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.434595e6

QD
type: SiteQuality
SIO_000300: 1.267e1

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.291005291005291e-4
allele num: 9450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61110
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.063603488619443e-4
allele num: 9402
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

DP
type: SiteQuality
SIO_000300: 1.435769e6

QD
type: SiteQuality
SIO_000300: 1.157e1

VQSLOD
type: SiteQuality
SIO_000300: 9.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

FS
type: SiteQuality
SIO_000300: 5.656e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

GenotypeQuality
all individuals: 490
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.061345786457228e-4
allele num: 9422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61146
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.692e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: -3.221e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.076e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.4367e6

GenotypeQuality
all individuals: 1489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40919
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.633666601320003e-5
allele num: 61212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9492
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.027e0

VQSLOD
type: SiteQuality
SIO_000300: -5.066000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

QD
type: SiteQuality
SIO_000300: 1.183e1

MQRankSum
type: SiteQuality
SIO_000300: -1.727e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.452e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.328e0

DP
type: SiteQuality
SIO_000300: 1.439119e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

GenotypeQuality
all individuals: 413
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1904
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41270
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4473
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.630044989241703e-5
allele num: 61348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.13e-1

QD
type: SiteQuality
SIO_000300: 1.085e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

DP
type: SiteQuality
SIO_000300: 1.444473e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.901e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.114e0

FS
type: SiteQuality
SIO_000300: 1.206e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.993e-1

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 448
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 337
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 41387
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 8.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.13643168651956e-5
allele num: 61452
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.31578947368421e-3
allele num: 760
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.805917576611483e-5
allele num: 11356
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.076843198338525e-4
allele num: 9630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

South Asian
type: Population
allele count: 75
allele frequency: 7.69704433497537e-3
allele num: 9744
num of homozygotes: 4

VQSLOD
type: SiteQuality
SIO_000300: 4.16e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

FS
type: SiteQuality
SIO_000300: 1.153e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.296e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

DP
type: SiteQuality
SIO_000300: 1.449859e6

GenotypeQuality
all individuals: 1493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41492
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.038205980066445e-4
allele num: 9632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.252244048393391e-5
allele num: 61496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.809020436927414e-5
allele num: 11352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 1.262e1

DP
type: SiteQuality
SIO_000300: 1.450119e6

MQRankSum
type: SiteQuality
SIO_000300: -4.64e-1

FS
type: SiteQuality
SIO_000300: 1.1891e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.432e0

GenotypeQuality
all individuals: 219
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.874561289483946e-5
allele num: 61544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

DP
type: SiteQuality
SIO_000300: 1.450945e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e0

FS
type: SiteQuality
SIO_000300: 6.132e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.036e0

QD
type: SiteQuality
SIO_000300: 1.169e1

GenotypeQuality
all individuals: 1438
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4831
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41703
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.03498240529911e-4
allele num: 9662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.186239620403321e-4
allele num: 8430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 6.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.373e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.453921e6

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4894
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.18595825426945e-4
allele num: 8432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.664e0

DP
type: SiteQuality
SIO_000300: 1.457336e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.165e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.21e-1

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4867
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42088
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.027115858668858e-4
allele num: 9736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 7.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-2

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 3.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

QD
type: SiteQuality
SIO_000300: 1.104e1

DP
type: SiteQuality
SIO_000300: 1.461441e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.216e0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.213367609254498e-5
allele num: 62240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: -8.78e-2

DP
type: SiteQuality
SIO_000300: 1.474098e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

FS
type: SiteQuality
SIO_000300: 2.302e0

QD
type: SiteQuality
SIO_000300: 1.104e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-3

GenotypeQuality
all individuals: 42795
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.605961328451211e-5
allele num: 62268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.011e0

VQSLOD
type: SiteQuality
SIO_000300: 5.669999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.126e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

DP
type: SiteQuality
SIO_000300: 1.476006e6

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4594
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.770391159445712e-5
allele num: 11402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11192
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.477335e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.9e-1

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 42953
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GenotypeQuality
all individuals: 172
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.865248226950355e-5
allele num: 11280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.478553e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.15e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 43164
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variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599078930536011e-5
allele num: 62536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11672
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

DP
type: SiteQuality
SIO_000300: 1.483711e6

QD
type: SiteQuality
SIO_000300: 1.658e1

FS
type: SiteQuality
SIO_000300: 3.733e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 43225
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.751927119831815e-4
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62582
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

FS
type: SiteQuality
SIO_000300: 2.619e0

VQSLOD
type: SiteQuality
SIO_000300: 5.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

DP
type: SiteQuality
SIO_000300: 1.484879e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.92e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

QD
type: SiteQuality
SIO_000300: 1.086e1

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43565
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variant carriers: 0

GenotypeQuality
all individuals: 300
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variant carriers: 0

GenotypeQuality
all individuals: 7484
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variant carriers: 0

GenotypeQuality
all individuals: 1480
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variant carriers: 1

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 9.75e1
variant carriers: 213

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593320799209713e-5
allele num: 62762
num of homozygotes: 0

African
type: Population
allele count: 204
allele frequency: 2.059357964869776e-2
allele num: 9906
num of homozygotes: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.051340459085334e-3
allele num: 11414
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.312e0

FS
type: SiteQuality
SIO_000300: 5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

DP
type: SiteQuality
SIO_000300: 1.499047e6

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7524
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 2

GenotypeQuality
all individuals: 332
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GenotypeQuality
all individuals: 4152
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 1119
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GenotypeQuality
all individuals: 69
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.182787485279608e-5
allele num: 62838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.491042e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

FS
type: SiteQuality
SIO_000300: 1.882e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: -2.847e-1

QD
type: SiteQuality
SIO_000300: 7.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

GenotypeQuality
all individuals: 1496
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3683
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GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 177
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.405213270142181e-5
allele num: 13504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: -1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.500035e6

MQ
type: SiteQuality
SIO_000300: 5.643e1

QD
type: SiteQuality
SIO_000300: 9.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1108
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GenotypeQuality
all individuals: 278
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 328
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.344300822561692e-5
allele num: 13616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.811e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 1.501288e6

QD
type: SiteQuality
SIO_000300: 3.55e0

MQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.682e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584233706156332e-5
allele num: 63122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.94e-1

FS
type: SiteQuality
SIO_000300: 4.214e0

MQRankSum
type: SiteQuality
SIO_000300: -2.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.73e-1

DP
type: SiteQuality
SIO_000300: 1.50113e6

QD
type: SiteQuality
SIO_000300: 1.429e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.211885186787827e-5
allele num: 13866
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 9878
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East Asian
type: Population
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allele frequency: 1.180080245456691e-4
allele num: 8474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.214e0

QD
type: SiteQuality
SIO_000300: 1.429e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44119
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GenotypeQuality
all individuals: 315
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.582428711586543e-5
allele num: 63194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.139e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

MQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

FS
type: SiteQuality
SIO_000300: 4.514e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 1.498217e6

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.993006993006993e-5
allele num: 14300
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.498217e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

FS
type: SiteQuality
SIO_000300: 4.514e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

GenotypeQuality
all individuals: 346
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3867
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581827960391028e-5
allele num: 63218
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 2.584e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.881e1

DP
type: SiteQuality
SIO_000300: 1.498493e6

QD
type: SiteQuality
SIO_000300: 1.181e1

VQSLOD
type: SiteQuality
SIO_000300: -8.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.83e-1

GenotypeQuality
all individuals: 387
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8129
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.274930407728836e-5
allele num: 61070
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

FS
type: SiteQuality
SIO_000300: 2.1e0

DP
type: SiteQuality
SIO_000300: 1.407991e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

QD
type: SiteQuality
SIO_000300: 1.245e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8692
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.077354018530489e-4
allele num: 9282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.965e0

QD
type: SiteQuality
SIO_000300: 1.449e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 3.115e0

VQSLOD
type: SiteQuality
SIO_000300: 9.44e-1

DP
type: SiteQuality
SIO_000300: 1.392598e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9478
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 235
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10762
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.228501228501228e-4
allele num: 8140
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.261e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.511e0

FS
type: SiteQuality
SIO_000300: 1.871e0

DP
type: SiteQuality
SIO_000300: 1.371489e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

GenotypeQuality
all individuals: 1663
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4614
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8782
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.49902563333833e-4
allele num: 13342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.098000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.284642e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

QD
type: SiteQuality
SIO_000300: 6.96e0

GenotypeQuality
all individuals: 308
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.737800639510635e-5
allele num: 57544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.501875468867217e-5
allele num: 13330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.173e0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

FS
type: SiteQuality
SIO_000300: 1.167e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

DP
type: SiteQuality
SIO_000300: 1.282184e6

VQSLOD
type: SiteQuality
SIO_000300: 7.97e-1

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.75e1
variant carriers: 12

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.955207963028795e-4
allele num: 56260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4944
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

FS
type: SiteQuality
SIO_000300: 7.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

DP
type: SiteQuality
SIO_000300: 1.223325e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.929e0

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14730
bin: 2.25e1
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GenotypeQuality
all individuals: 27910
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.165772907437631e-4
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

DP
type: SiteQuality
SIO_000300: 1.221067e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.707e0

VQSLOD
type: SiteQuality
SIO_000300: 5.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

QD
type: SiteQuality
SIO_000300: 1.545e1

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
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variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.814816159123081e-5
allele num: 55102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4810
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

MQ
type: SiteQuality
SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.322e-1

DP
type: SiteQuality
SIO_000300: 1.174753e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

FS
type: SiteQuality
SIO_000300: 3.203e0

QD
type: SiteQuality
SIO_000300: 7.35e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 1.396258028483664e-4
allele num: 7162
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9142
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

DP
type: SiteQuality
SIO_000300: 1.09898e6

FS
type: SiteQuality
SIO_000300: 8.384e0

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52758
num of homozygotes: 0

Latino
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allele count: 17
allele frequency: 1.859549332749945e-3
allele num: 9142
num of homozygotes: 0

South Asian
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allele frequency: 8.21962847279303e-5
allele num: 12166
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.384e0

VQSLOD
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

DP
type: SiteQuality
SIO_000300: 1.09898e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 612
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 50798
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 8686
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7798
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4272
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

VQSLOD
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SIO_000300: -1.906e0

ClippingRankSum
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SIO_000300: 6.25e-1

QD
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DP
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 2.392e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4244
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.975425704239263e-5
allele num: 50622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
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QD
type: SiteQuality
SIO_000300: 1.415e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

FS
type: SiteQuality
SIO_000300: 3.123e0

BaseQRankSum
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SIO_000300: -1.589e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.029583e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49964
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7686
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European (Finnish)
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allele count: 1
allele frequency: 2.388915432393693e-4
allele num: 4186
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 596
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8550
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6874
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3636
num of homozygotes: 0

East Asian
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allele frequency: 1.644195988161789e-4
allele num: 6082
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.107419712070875e-4
allele num: 9030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.435956346927053e-4
allele num: 6964
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.512024545413527e-5
allele num: 44326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

ReadPosRankSum
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SIO_000300: -5.6e-2

MQRankSum
type: SiteQuality
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FS
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SIO_000300: 3.24e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8818
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 9.170525929662066e-5
allele num: 43618
num of homozygotes: 0

Latino
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allele num: 7272
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Other
type: Population
allele count: 0
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allele num: 522
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VQSLOD
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SIO_000300: 1.46e-1

MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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MQ
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ReadPosRankSum
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SIO_000300: 3.22e-1

ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 502
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European (Finnish)
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allele frequency: 0.0e0
allele num: 3448
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African
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.383562949897507e-5
allele num: 41954
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East Asian
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allele num: 5808
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South Asian
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allele frequency: 1.203079884504331e-4
allele num: 8312
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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QD
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DP
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FS
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VQSLOD
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

European (Non-Finnish)
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allele frequency: 9.702614854703343e-5
allele num: 41226
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African
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South Asian
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East Asian
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European (Finnish)
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Latino
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allele frequency: 1.460706982179375e-4
allele num: 6846
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Other
type: Population
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allele num: 496
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ClippingRankSum
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SIO_000300: -3.12e-1

MQ
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MQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 42
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.569505113315176e-5
allele num: 38918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.024e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 8.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.025e0

DP
type: SiteQuality
SIO_000300: 7.54514e5

GenotypeQuality
all individuals: 9211
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35784
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.575795776867318e-4
allele num: 6346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.43168e5

FS
type: SiteQuality
SIO_000300: 3.802e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.309e0

VQSLOD
type: SiteQuality
SIO_000300: 6.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

QD
type: SiteQuality
SIO_000300: 1.249e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.059e0

GenotypeQuality
all individuals: 790
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 37029
bin: 2.25e1
variant carriers: 2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 420
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 869
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1724
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5120
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.252252252252252e-3
allele num: 444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 3.344481605351171e-3
allele num: 2990
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.147540983606557e-3
allele num: 6100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 207
allele frequency: 5.602165087956698e-3
allele num: 36950
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.90951821386604e-3
allele num: 6808
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 8.364001338240214e-4
allele num: 5978
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.63e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

DP
type: SiteQuality
SIO_000300: 7.11131e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 2

GenotypeQuality
all individuals: 90
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.060238773407673e-5
allele num: 33002
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.91e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.542e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.093e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.53e-1

QD
type: SiteQuality
SIO_000300: 5.92e0

DP
type: SiteQuality
SIO_000300: 6.32695e5

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 2

GenotypeQuality
all individuals: 22
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 79
bin: 9.75e1
variant carriers: 44

GenotypeQuality
all individuals: 54
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 36768
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4888
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.012048192771084e-3
allele num: 332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2266
num of homozygotes: 0

East Asian
type: Population
allele count: 44
allele frequency: 1.0648596321394e-2
allele num: 4132
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 5.81170089112747e-4
allele num: 5162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.73536741429245e-5
allele num: 29694
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

FS
type: SiteQuality
SIO_000300: 7.85e-1

QD
type: SiteQuality
SIO_000300: 1.149e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.79389e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.23e-2

GenotypeQuality
all individuals: 1261
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 1

GenotypeQuality
all individuals: 1110
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 2375
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 2

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.041232819658476e-4
allele num: 28812
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.22e-1

QD
type: SiteQuality
SIO_000300: 1.383e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.49e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 1.0039e1

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: -9.49e-2

DP
type: SiteQuality
SIO_000300: 5.66261e5

GenotypeQuality
all individuals: 13164
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
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variant carriers: 0

GenotypeQuality
all individuals: 2307
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 36
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4722
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.112378538234052e-4
allele num: 4734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27630
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.61e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.296e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.713e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

DP
type: SiteQuality
SIO_000300: 5.46469e5

GenotypeQuality
all individuals: 30541
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 1283
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 1

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.913752913752914e-4
allele num: 3432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3192
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.828e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.457e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.47e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.026e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.998e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 4.73313e5

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19393
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1164
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1766
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GenotypeQuality
all individuals: 35
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1058
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 4.5222e5

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.87e-2

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 3

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 1115
bin: 6.25e1
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 1150
bin: 3.25e1
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GenotypeQuality
all individuals: 166
bin: 6.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18976
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 5.35833891493637e-3
allele num: 2986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2820
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4215e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.67e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.413e0

DP
type: SiteQuality
SIO_000300: 4.49133e5

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 20
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1709
bin: 2.75e1
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GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 39
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1110
bin: 3.25e1
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GenotypeQuality
all individuals: 1040
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 29198
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 7.24112961622013e-4
allele num: 2762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.862049227246708e-4
allele num: 3494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 5.396654074473826e-4
allele num: 18530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2584
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.207e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

DP
type: SiteQuality
SIO_000300: 4.42946e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.25e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3494
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.42946e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.25e-2

QD
type: SiteQuality
SIO_000300: 1.207e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

GenotypeQuality
all individuals: 35
bin: 7.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 5

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.75e1
variant carriers: 63

GenotypeQuality
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bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 25
bin: 8.25e1
variant carriers: 8

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.922767116796968e-5
allele num: 16884
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 8.130081300813008e-4
allele num: 2460
num of homozygotes: 0

South Asian
type: Population
allele count: 59
allele frequency: 2.250190694126621e-2
allele num: 2622
num of homozygotes: 3

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.98e-2

FS
type: SiteQuality
SIO_000300: 8.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 1.421e1

DP
type: SiteQuality
SIO_000300: 4.24066e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 298
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.335529650278763e-5
allele num: 15784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.791e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.255e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.36e-2

QD
type: SiteQuality
SIO_000300: 1.149e1

DP
type: SiteQuality
SIO_000300: 4.09767e5

GenotypeQuality
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21849
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1998
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 3.84009e5

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.85e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27798
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.076658053402239e-4
allele num: 9288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1266
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.163e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 3.4009e5

QD
type: SiteQuality
SIO_000300: 1.177e1

GenotypeQuality
all individuals: 1767
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3548
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.135839384878257e-4
allele num: 9364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1388
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.894e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.48e-2

DP
type: SiteQuality
SIO_000300: 3.38939e5

QD
type: SiteQuality
SIO_000300: 7.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 425
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.080146899978397e-4
allele num: 9258
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.019e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 3.38261e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 915
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.170767004341534e-3
allele num: 1382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 3.38261e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 1.019e1

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 17
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.210653753026634e-3
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7358
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.983240223463687e-4
allele num: 1432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

VQSLOD
type: SiteQuality
SIO_000300: -6.591e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-2

FS
type: SiteQuality
SIO_000300: 1.0802e1

DP
type: SiteQuality
SIO_000300: 3.07659e5

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 1

GenotypeQuality
all individuals: 297
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GenotypeQuality
all individuals: 218
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GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 934
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 7.739938080495357e-4
allele num: 1292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6752
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 2.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.14e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.596e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

DP
type: SiteQuality
SIO_000300: 2.99152e5

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.047e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.63274e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.669e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0