X-9905577-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905577
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905577
    reference: chr 0
allele count: 29
allele frequency: 3.367824501503908e-4
allele num: 86109
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.3991G>T
  hgvsp: ENSP00000370299.3:p.Ala1331Ser
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.496G>T
  hgvsp: ENSP00000415229.2:p.Ala166Ser
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.496G>T
  hgvsp: ENSP00000406724.1:p.Ala166Ser
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1500
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Ala1331Ser
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

X-9905579-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905579
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905579
    reference: chr 0
allele count: 1
allele frequency: 1.161737029206069e-5
allele num: 86078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.498C>G
  hgvsp: ENST00000452575.1:c.498C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.3993C>G
  hgvsp: ENST00000380913.3:c.3993C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.498C>G
  hgvsp: ENST00000418909.2:c.498C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 426
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala1331Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

X-9905580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905580
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905580
    reference: chr 0
allele count: 2
allele frequency: 2.323825015976297e-5
allele num: 86065
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.499G>A
  hgvsp: ENSP00000415229.2:p.Asp167Asn
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.499G>A
  hgvsp: ENSP00000406724.1:p.Asp167Asn
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.3994G>A
  hgvsp: ENSP00000370299.3:p.Asp1332Asn
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 60
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  variant carriers: 0
hgvs: p.Asp1332Asn
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-9905600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905600
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905600
    reference: chr 0
allele count: 1
allele frequency: 1.170548987475126e-5
allele num: 85430
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4014G>A
  hgvsp: ENST00000380913.3:c.4014G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.519G>A
  hgvsp: ENST00000418909.2:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.519G>A
  hgvsp: ENST00000452575.1:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 138
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val1338Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-9905606-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905606
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905606
    reference: chr 0
allele count: 40
allele frequency: 4.699910701696668e-4
allele num: 85108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.525C>A
  hgvsp: ENST00000418909.2:c.525C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4020C>A
  hgvsp: ENST00000380913.3:c.4020C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.525C>A
  hgvsp: ENST00000452575.1:c.525C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14834
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38795
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3714
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50157
  bin: 6.25e1
  variant carriers: 3
hgvs: p.Ile1340Ile
num of homozygotes: 1
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-9905615-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905615
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905615
    reference: chr 0
allele count: 10
allele frequency: 1.189923725889171e-4
allele num: 84039
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.534T>C
  hgvsp: ENST00000452575.1:c.534T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.534T>C
  hgvsp: ENST00000418909.2:c.534T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4029T>C
  hgvsp: ENST00000380913.3:c.4029T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14641
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37012
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 481
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
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genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48513
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 251
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  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 540
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr1343Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD

X-9905616-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905616
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905616
    reference: chr 0
allele count: 1
allele frequency: 1.198968886757389e-5
allele num: 83405
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4030A>G
  hgvsp: ENSP00000370299.3:p.Met1344Val
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.535A>G
  hgvsp: ENSP00000415229.2:p.Met179Val
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.535A>G
  hgvsp: ENSP00000406724.1:p.Met179Val
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14411
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3365
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46299
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 580
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 2870
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met1344Val
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-9905627-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905627
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905627
    reference: chr 0
allele count: 4
allele frequency: 4.893924193114248e-5
allele num: 81734
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4041G>A
  hgvsp: ENSP00000370299.3:p.Met1347Ile
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.546G>A
  hgvsp: ENSP00000406724.1:p.Met182Ile
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.546G>A
  hgvsp: ENSP00000415229.2:p.Met182Ile
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33730
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 8866
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genotype quality: GenotypeQuality
  all individuals: 862
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 476
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
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genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met1347Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-9905630-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905630
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905630
    reference: chr 0
allele count: 1
allele frequency: 1.23295440534609e-5
allele num: 81106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.549A>C
  hgvsp: ENSP00000406724.1:p.Glu183Asp
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.549A>C
  hgvsp: ENSP00000415229.2:p.Glu183Asp
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4044A>C
  hgvsp: ENSP00000370299.3:p.Glu1348Asp
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42850
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu1348Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

X-9905649-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905649
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905649
    reference: chr 0
allele count: 4
allele frequency: 5.386407400923769e-5
allele num: 74261
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.568G>A
  hgvsp: ENSP00000406724.1:p.Glu190Lys
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4063G>A
  hgvsp: ENSP00000370299.3:p.Glu1355Lys
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.568G>A
  hgvsp: ENSP00000415229.2:p.Glu190Lys
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9532
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2250
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18423
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
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  variant carriers: 2
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu1355Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

X-9905655-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905655
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905655
    reference: chr 0
allele count: 2
allele frequency: 2.785709311233373e-5
allele num: 71795
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.574C>T
  hgvsp: ENSP00000406724.1:p.Leu192Phe
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4069C>T
  hgvsp: ENSP00000370299.3:p.Leu1357Phe
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.574C>T
  hgvsp: ENSP00000415229.2:p.Leu192Phe
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13519
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 933
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 250
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genotype quality: GenotypeQuality
  all individuals: 361
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu1357Phe
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

X-9905666-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905666
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905666
    reference: chr 0
allele count: 8
allele frequency: 1.19342423247904e-4
allele num: 67034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.585A>G
  hgvsp: ENST00000452575.1:c.585A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.585A>G
  hgvsp: ENST00000418909.2:c.585A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4080A>G
  hgvsp: ENST00000380913.3:c.4080A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 909
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16498
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 27
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 402
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu1360Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS

X-9905691-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905691
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905691
    reference: chr 0
allele count: 2
allele frequency: 4.015983614786852e-5
allele num: 49801
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4105C>A
  hgvsp: ENSP00000370299.3:p.Pro1369Thr
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.610C>A
  hgvsp: ENSP00000415229.2:p.Pro204Thr
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.610C>A
  hgvsp: ENSP00000406724.1:p.Pro204Thr
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8540
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6822
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro1369Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

X-9905697-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905697
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905697
    reference: chr 0
allele count: 8
allele frequency: 1.701078058219397e-4
allele num: 47029
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.616A>G
  hgvsp: ENSP00000406724.1:p.Ile206Val
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4111A>G
  hgvsp: ENSP00000370299.3:p.Ile1371Val
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.616A>G
  hgvsp: ENSP00000415229.2:p.Ile206Val
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile1371Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-9905699-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905699
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905699
    reference: chr 0
allele count: 2
allele frequency: 4.387119417390542e-5
allele num: 45588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.618C>T
  hgvsp: ENST00000418909.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.618C>T
  hgvsp: ENST00000452575.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4113C>T
  hgvsp: ENST00000380913.3:c.4113C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ile1371Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-9905704-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905704
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905704
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 41671
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4118C>A
  hgvsp: ENSP00000370299.3:p.Ser1373Tyr
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.623C>A
  hgvsp: ENSP00000415229.2:p.Ser208Tyr
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.623C>A
  hgvsp: ENSP00000406724.1:p.Ser208Tyr
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24196
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser1373Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-9905709-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905709
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905709
    reference: chr 0
allele count: 1
allele frequency: 2.629433882885015e-5
allele num: 38031
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.628A>G
  hgvsp: ENSP00000415229.2:p.Arg210Gly
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4123A>G
  hgvsp: ENSP00000370299.3:p.Arg1375Gly
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.628A>G
  hgvsp: ENSP00000406724.1:p.Arg210Gly
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1904
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5432
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg1375Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

X-9905730-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905730
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905730
    reference: chr 0
allele count: 1
allele frequency: 3.725366017211191e-5
allele num: 26843
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4139+5G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.644+5G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.644+5G>A
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
hgvs: c.4139+5G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

X-9905730-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905730
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905730
    reference: chr 0
allele count: 1
allele frequency: 3.725366017211191e-5
allele num: 26843
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4139+5G>C
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.644+5G>C
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.644+5G>C
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20905
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
hgvs: c.4139+5G>C
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

X-9905732-A-AGGCGTGGCCTCCCAGCTTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905732
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905751
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 26015
alternate allele: AGGCGTGGCCTCCCAGCTTG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23370
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 23702
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
hgvs: c.4139+14_4139+32dupGCCTCCCAGCTTGGGCGTG
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

X-9905735-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905735
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905735
    reference: chr 0
allele count: 7
allele frequency: 2.905046480743692e-4
allele num: 24096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.644+10C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.644+10C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4139+10C>T
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
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site quality: ClippingRankSum

X-9905736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905736
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905736
    reference: chr 0
allele count: 33
allele frequency: 1.378849287594535e-3
allele num: 23933
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.644+11G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4139+11G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.644+11G>A
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 2
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
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site quality: MQ
site quality: QD
site quality: ClippingRankSum

X-9905755-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905755
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905755
    reference: chr 0
allele count: 1
allele frequency: 6.43707756678468e-5
allele num: 15535
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.644+30G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4139+30G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.644+30G>A
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

X-9905769-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009905769
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009905769
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 12389
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.644+44C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.644+44C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4139+44C>T
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

X-9907192-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907192
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907192
    reference: chr 0
allele count: 4
allele frequency: 8.58277008904624e-5
allele num: 46605
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4140-43G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.645-43G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.645-43G>A
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3935
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-9907194-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907194
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907194
    reference: chr 0
allele count: 1
allele frequency: 2.12988008775106e-5
allele num: 46951
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4140-41G>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.645-41G>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.645-41G>T
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-9907217-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907217
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907217
    reference: chr 0
allele count: 15
allele frequency: 2.871143097771993e-4
allele num: 52244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.645-18T>C
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.645-18T>C
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4140-18T>C
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-9907229-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907229
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907229
    reference: chr 0
allele count: 2
allele frequency: 3.551325532254914e-5
allele num: 56317
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.645-6A>G
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4140-6A>G
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.645-6A>G
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: c.4140-6A>G
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

X-9907231-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907231
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907231
    reference: chr 0
allele count: 6
allele frequency: 1.055966209081309e-4
allele num: 56820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.645-4C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.645-4C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4140-4C>T
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
hgvs: c.4140-4C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

X-9907234-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907234
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907234
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 57699
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.645-1G>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.645-1G>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4140-1G>T
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: splice acceptor
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20646
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  variant carriers: 0
hgvs: c.4140-1G>T
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

X-9907242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907242
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907242
    reference: chr 0
allele count: 3
allele frequency: 5.016386863754933e-5
allele num: 59804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.652G>A
  hgvsp: ENSP00000406724.1:p.Glu218Lys
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4147G>A
  hgvsp: ENSP00000370299.3:p.Glu1383Lys
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.652G>A
  hgvsp: ENSP00000415229.2:p.Glu218Lys
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu1383Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

X-9907245-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907245
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907245
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 60352
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4150C>A
  hgvsp: ENSP00000370299.3:p.Pro1384Thr
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.655C>A
  hgvsp: ENSP00000406724.1:p.Pro219Thr
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.655C>A
  hgvsp: ENSP00000415229.2:p.Pro219Thr
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro1384Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-9907247-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907247
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907247
    reference: chr 0
allele count: 18
allele frequency: 2.948258070856469e-4
allele num: 61053
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.657C>T
  hgvsp: ENST00000452575.1:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.657C>T
  hgvsp: ENST00000418909.2:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4152C>T
  hgvsp: ENST00000380913.3:c.4152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro1384Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

X-9907250-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907250
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907250
    reference: chr 0
allele count: 1
allele frequency: 1.626174911373467e-5
allele num: 61494
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4155C>A
  hgvsp: ENSP00000370299.3:p.Ser1385Arg
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.660C>A
  hgvsp: ENSP00000415229.2:p.Ser220Arg
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.660C>A
  hgvsp: ENSP00000406724.1:p.Ser220Arg
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22799
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser1385Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-9907250-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907250
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907250
    reference: chr 0
allele count: 1
allele frequency: 1.626174911373467e-5
allele num: 61494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.660C>T
  hgvsp: ENST00000418909.2:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.660C>T
  hgvsp: ENST00000452575.1:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4155C>T
  hgvsp: ENST00000380913.3:c.4155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21933
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 4471
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 403
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 437
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser1385Ser
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

X-9907251-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907251
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907251
    reference: chr 0
allele count: 1
allele frequency: 1.615091414174042e-5
allele num: 61916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.661G>A
  hgvsp: ENSP00000406724.1:p.Val221Met
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.661G>A
  hgvsp: ENSP00000415229.2:p.Val221Met
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4156G>A
  hgvsp: ENSP00000370299.3:p.Val1386Met
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Val1386Met
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

X-9907258-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907258
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907258
    reference: chr 0
allele count: 36
allele frequency: 5.733305728527974e-4
allele num: 62791
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4163C>T
  hgvsp: ENSP00000370299.3:p.Ala1388Val
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.668C>T
  hgvsp: ENSP00000415229.2:p.Ala223Val
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.668C>T
  hgvsp: ENSP00000406724.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 13
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
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  variant carriers: 0
hgvs: p.Ala1388Val
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-9907263-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907263
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907263
    reference: chr 0
allele count: 11
allele frequency: 1.724164955563567e-4
allele num: 63799
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.673G>A
  hgvsp: ENSP00000415229.2:p.Val225Met
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4168G>A
  hgvsp: ENSP00000370299.3:p.Val1390Met
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.673G>A
  hgvsp: ENSP00000406724.1:p.Val225Met
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6832
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21230
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21867
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val1390Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

X-9907265-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907265
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907265
    reference: chr 0
allele count: 2
allele frequency: 3.110323162576591e-5
allele num: 64302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.675G>A
  hgvsp: ENST00000418909.2:c.675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4170G>A
  hgvsp: ENST00000380913.3:c.4170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.675G>A
  hgvsp: ENST00000452575.1:c.675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 455
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val1390Val
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

X-9907274-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907274
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907274
    reference: chr 0
allele count: 1
allele frequency: 1.528257480820369e-5
allele num: 65434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.684C>T
  hgvsp: ENST00000418909.2:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.684C>T
  hgvsp: ENST00000452575.1:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4179C>T
  hgvsp: ENST00000380913.3:c.4179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7404
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18980
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20805
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 833
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
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  variant carriers: 0
hgvs: p.Ala1393Ala
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD

X-9907279-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907279
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907279
    reference: chr 0
allele count: 4
allele frequency: 6.083557664522213e-5
allele num: 65751
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4184A>G
  hgvsp: ENSP00000370299.3:p.Asn1395Ser
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.689A>G
  hgvsp: ENSP00000406724.1:p.Asn230Ser
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.689A>G
  hgvsp: ENSP00000415229.2:p.Asn230Ser
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7606
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22651
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 179
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21161
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn1395Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

X-9907286-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907286
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907286
    reference: chr 0
allele count: 1
allele frequency: 1.512241595717332e-5
allele num: 66127
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4191C>G
  hgvsp: ENST00000380913.3:c.4191C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.696C>G
  hgvsp: ENST00000418909.2:c.696C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.696C>G
  hgvsp: ENST00000452575.1:c.696C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 33
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr1397Thr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-9907291-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907291
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907291
    reference: chr 0
allele count: 1
allele frequency: 1.509456746516929e-5
allele num: 66249
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.701A>G
  hgvsp: ENSP00000415229.2:p.Tyr234Cys
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.701A>G
  hgvsp: ENSP00000406724.1:p.Tyr234Cys
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4196A>G
  hgvsp: ENSP00000370299.3:p.Tyr1399Cys
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr1399Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: A
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

X-9907292-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907292
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907292
    reference: chr 0
allele count: 1
allele frequency: 1.509844184080203e-5
allele num: 66232
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4197C>G
  hgvsp: ENSP00000370299.3:p.Tyr1399Ter
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.702C>G
  hgvsp: ENSP00000406724.1:p.Tyr234Ter
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.702C>G
  hgvsp: ENSP00000415229.2:p.Tyr234Ter
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19234
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1534
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  variant carriers: 0
hgvs: p.Tyr1399Ter
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

X-9907298-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907298
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907298
    reference: chr 0
allele count: 1
allele frequency: 1.50407604608489e-5
allele num: 66486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.708G>A
  hgvsp: ENST00000452575.1:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4203G>A
  hgvsp: ENST00000380913.3:c.4203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.708G>A
  hgvsp: ENST00000418909.2:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1016
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
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  variant carriers: 0
hgvs: p.Thr1401Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-9907299-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907299
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907299
    reference: chr 0
allele count: 1
allele frequency: 1.501208472820621e-5
allele num: 66613
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.709T>A
  hgvsp: ENSP00000415229.2:p.Ser237Thr
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.709T>A
  hgvsp: ENSP00000406724.1:p.Ser237Thr
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4204T>A
  hgvsp: ENSP00000370299.3:p.Ser1402Thr
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 181
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser1402Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

X-9907300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907300
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907300
    reference: chr 0
allele count: 1
allele frequency: 1.502020217192123e-5
allele num: 66577
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.710C>T
  hgvsp: ENSP00000415229.2:p.Ser237Leu
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4205C>T
  hgvsp: ENSP00000370299.3:p.Ser1402Leu
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.710C>T
  hgvsp: ENSP00000406724.1:p.Ser237Leu
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser1402Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

X-9907301-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907301
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907301
    reference: chr 0
allele count: 3
allele frequency: 4.507482420818559e-5
allele num: 66556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.711G>A
  hgvsp: ENST00000452575.1:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.711G>A
  hgvsp: ENST00000418909.2:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4206G>A
  hgvsp: ENST00000380913.3:c.4206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8022
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 443
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hgvs: p.Ser1402Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

X-9907313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907313
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907313
    reference: chr 0
allele count: 6
allele frequency: 8.977466558937069e-5
allele num: 66834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.723G>A
  hgvsp: ENST00000452575.1:c.723G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4218G>A
  hgvsp: ENST00000380913.3:c.4218G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.723G>A
  hgvsp: ENST00000418909.2:c.723G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala1406Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

X-9907316-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907316
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907316
    reference: chr 0
allele count: 1
allele frequency: 1.488604730785834e-5
allele num: 67177
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4221G>A
  hgvsp: ENST00000380913.3:c.4221G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.726G>A
  hgvsp: ENST00000452575.1:c.726G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.726G>A
  hgvsp: ENST00000418909.2:c.726G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20293
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu1407Glu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-9907329-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907329
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907329
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 67419
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.739A>G
  hgvsp: ENSP00000406724.1:p.Met247Val
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4234A>G
  hgvsp: ENSP00000370299.3:p.Met1412Val
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.739A>G
  hgvsp: ENSP00000415229.2:p.Met247Val
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2191
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Met1412Val
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-9907342-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907342
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907342
    reference: chr 0
allele count: 1
allele frequency: 1.501614235302951e-5
allele num: 66595
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4247A>C
  hgvsp: ENSP00000370299.3:p.Gln1416Pro
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.752A>C
  hgvsp: ENSP00000415229.2:p.Gln251Pro
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.752A>C
  hgvsp: ENSP00000406724.1:p.Gln251Pro
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln1416Pro
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

X-9907358-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907358
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907358
    reference: chr 0
allele count: 1
allele frequency: 1.508295625942685e-5
allele num: 66300
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4263C>T
  hgvsp: ENST00000380913.3:c.4263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.768C>T
  hgvsp: ENST00000452575.1:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.768C>T
  hgvsp: ENST00000418909.2:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His1421His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

X-9907359-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907359
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907359
    reference: chr 0
allele count: 1
allele frequency: 1.509889778046203e-5
allele num: 66230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.769G>A
  hgvsp: ENSP00000415229.2:p.Glu257Lys
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4264G>A
  hgvsp: ENSP00000370299.3:p.Glu1422Lys
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.769G>A
  hgvsp: ENSP00000406724.1:p.Glu257Lys
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17959
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22217
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genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 25448
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu1422Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

X-9907362-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907362
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907362
    reference: chr 0
allele count: 2
allele frequency: 3.047015448368323e-5
allele num: 65638
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4267G>A
  hgvsp: ENSP00000370299.3:p.Glu1423Lys
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.772G>A
  hgvsp: ENSP00000415229.2:p.Glu258Lys
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.772G>A
  hgvsp: ENSP00000406724.1:p.Glu258Lys
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 22665
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 920
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Glu1423Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-9907369-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907369
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907369
    reference: chr 0
allele count: 429
allele frequency: 6.643849406080129e-3
allele num: 64571
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4274C>T
  hgvsp: ENSP00000370299.3:p.Ser1425Leu
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.779C>T
  hgvsp: ENSP00000415229.2:p.Ser260Leu
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.779C>T
  hgvsp: ENSP00000406724.1:p.Ser260Leu
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 7
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9008
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  variant carriers: 90
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 50
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 86
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 57
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 247
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genotype quality: GenotypeQuality
  all individuals: 417
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1738
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genotype quality: GenotypeQuality
  all individuals: 184
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  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 2.75e1
  variant carriers: 15
hgvs: p.Ser1425Leu
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-9907370-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907370
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907370
    reference: chr 0
allele count: 1
allele frequency: 1.548706829797119e-5
allele num: 64570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.780G>A
  hgvsp: ENST00000452575.1:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4275G>A
  hgvsp: ENST00000380913.3:c.4275G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.780G>A
  hgvsp: ENST00000418909.2:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 338
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genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser1425Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

X-9907376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907376
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907376
    reference: chr 0
allele count: 397
allele frequency: 6.257289663650979e-3
allele num: 63446
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4281C>T
  hgvsp: ENST00000380913.3:c.4281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.786C>T
  hgvsp: ENST00000452575.1:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.786C>T
  hgvsp: ENST00000418909.2:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 1.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9617
  bin: 1.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 19355
  bin: 7.5e0
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 17776
  bin: 2.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 2.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 3.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21631
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 3.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24754
  bin: 2.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 7.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 9.75e1
  variant carriers: 293
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 1.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 4.25e1
  variant carriers: 15
hgvs: p.Ser1427Ser
num of homozygotes: 2
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-9907377-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907377
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907377
    reference: chr 0
allele count: 4
allele frequency: 6.314227533189159e-5
allele num: 63349
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4282G>A
  hgvsp: ENSP00000370299.3:p.Asp1428Asn
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.787G>A
  hgvsp: ENSP00000406724.1:p.Asp263Asn
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.787G>A
  hgvsp: ENSP00000415229.2:p.Asp263Asn
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17878
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19516
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Asp1428Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

X-9907388-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907388
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907388
    reference: chr 0
allele count: 3
allele frequency: 4.985707638104102e-5
allele num: 60172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.798C>T
  hgvsp: ENST00000418909.2:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4293C>T
  hgvsp: ENST00000380913.3:c.4293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.798C>T
  hgvsp: ENST00000452575.1:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20625
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11536
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His1431His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-9907389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907389
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907389
    reference: chr 0
allele count: 6
allele frequency: 1.000150022503376e-4
allele num: 59991
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4294G>A
  hgvsp: ENSP00000370299.3:p.Asp1432Asn
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.799G>A
  hgvsp: ENSP00000406724.1:p.Asp267Asn
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.799G>A
  hgvsp: ENSP00000415229.2:p.Asp267Asn
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20737
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 17910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 27472
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp1432Asn
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-9907415-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907415
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907415
    reference: chr 0
allele count: 1
allele frequency: 1.893580761219466e-5
allele num: 52810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.816+9G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4311+9G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.816+9G>A
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8179
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

X-9907416-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907416
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907416
    reference: chr 0
allele count: 1133
allele frequency: 2.156370141981653e-2
allele num: 52542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.816+10T>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4311+10T>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.816+10T>A
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 2.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 15138
  bin: 1.25e1
  variant carriers: 243
genotype depth: GenotypeDepth
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  variant carriers: 23
genotype depth: GenotypeDepth
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  variant carriers: 31
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 248
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  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 1.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 166
genotype depth: GenotypeDepth
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  variant carriers: 27
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 171
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 9.75e1
  variant carriers: 101
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 9.75e1
  variant carriers: 880
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 2.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
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  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 9938
  bin: 6.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 19
num of homozygotes: 51
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

X-9907433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907433
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907433
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 45140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.816+27C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4311+27C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.816+27C>T
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20200
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14219
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

X-9907434-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907434
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907434
    reference: chr 0
allele count: 1
allele frequency: 2.208285487147779e-5
allele num: 45284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.816+28G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4311+28G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.816+28G>A
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
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genotype depth: GenotypeDepth
  all individuals: 3039
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3842
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 275
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

X-9907438-G-GCGTGTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907438
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907444
    reference: chr 0
allele count: 1
allele frequency: 2.347693391243104e-5
allele num: 42595
alternate allele: GCGTGTC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.816+34_816+39dupGTGTCC
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.816+34_816+39dupGTGTCC
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4311+34_4311+39dupGTGTCC
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14980
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

X-9907439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907439
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907439
    reference: chr 0
allele count: 1
allele frequency: 2.374338153239784e-5
allele num: 42117
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4311+33C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.816+33C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.816+33C>T
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

X-9907450-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907450
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907450
    reference: chr 0
allele count: 1
allele frequency: 2.723311546840959e-5
allele num: 36720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.816+44A>G
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.816+44A>G
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4311+44A>G
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-9907454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907454
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907454
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 33797
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.816+48G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4311+48G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.816+48G>A
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

X-9907457-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009907457
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009907457
    reference: chr 0
allele count: 1
allele frequency: 3.044881554107545e-5
allele num: 32842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.816+51G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4311+51G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.816+51G>A
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-9912633-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009912633
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009912633
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 35634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.817-48C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.817-48C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4312-48C>T
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7974
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
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site quality: MQ

X-9912634-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009912634
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009912634
    reference: chr 0
allele count: 10
allele frequency: 2.793452148164702e-4
allele num: 35798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.817-47G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.817-47G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
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  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4312-47G>A
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
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site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
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X-9912648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009912648
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009912648
    reference: chr 0
allele count: 15
allele frequency: 3.937214551944984e-4
allele num: 38098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.817-33C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4312-33C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.817-33C>T
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
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site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
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site quality: ReadPosRankSum

X-9912652-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009912652
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009912652
    reference: chr 0
allele count: 2
allele frequency: 5.140727412928929e-5
allele num: 38905
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.817-29G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.817-29G>A
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4312-29G>A
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
  all individuals: 462
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff

X-9912669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009912669
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009912669
    reference: chr 0
allele count: 225
allele frequency: 5.029731300576742e-3
allele num: 44734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.817-12C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4312-12C>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.817-12C>T
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29395
  bin: 7.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9337
  bin: 1.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 1.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 11173
  bin: 2.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 3.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 28650
  bin: 2.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5159
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 3.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 9.75e1
  variant carriers: 175
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11274
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.75e1
  variant carriers: 3
num of homozygotes: 2
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-9912680-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009912680
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009912680
    reference: chr 0
allele count: 2
allele frequency: 4.013163175214704e-5
allele num: 49836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000415229
  ensembl transcript: ENST00000418909
  gene symbol: SHROOM2
  hgvsc: ENST00000418909.2:c.817-1G>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000370299
  ensembl transcript: ENST00000380913
  gene symbol: SHROOM2
  hgvsc: ENST00000380913.3:c.4312-1G>T
  variant of: http://identifiers.org/hgnc/630
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000146950
  ensembl protein: ENSP00000406724
  ensembl transcript: ENST00000452575
  gene symbol: SHROOM2
  hgvsc: ENST00000452575.1:c.817-1G>T
  variant of: http://identifiers.org/hgnc/630
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14407
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14677
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
hgvs: c.4312-1G>T
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-9912692-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24009912692
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24009912692
allele count: 1
allele frequency: 1.836007784673007e-5
allele num: 54466
alternate allele: G
canonical: true
consequence: missense
filter: PASS
hgvs: p.Ile1441Met
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 298
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9212
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.029654036243822e-4
allele num: 9712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4288
num of homozygotes: 0

East Asian
type: Population
allele count: 28
allele frequency: 4.249506753680376e-3
allele num: 6589
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.476e0

QD
type: SiteQuality
SIO_000300: 1.365e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.033e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

DP
type: SiteQuality
SIO_000300: 1.399056e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.292e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9209
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47310
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.644736842105263e-3
allele num: 608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8385
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4285
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9695
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.556e0

DP
type: SiteQuality
SIO_000300: 1.397236e6

VQSLOD
type: SiteQuality
SIO_000300: 7.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.19e-1

QD
type: SiteQuality
SIO_000300: 1.377e1

GenotypeQuality
all individuals: 430
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6587
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.385211687537269e-4
allele num: 8385
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4287
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9687
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.396654e6

FS
type: SiteQuality
SIO_000300: 2.043e0

QD
type: SiteQuality
SIO_000300: 1.36e1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.207e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 245
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8337
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4215
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9161
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6561
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.049648367796788e-4
allele num: 9527
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47025
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.09e-2

FS
type: SiteQuality
SIO_000300: 5.653e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.953e0

DP
type: SiteQuality
SIO_000300: 1.381597e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.213e0

QD
type: SiteQuality
SIO_000300: 2.766e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

GenotypeQuality
all individuals: 135
bin: 8.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4183
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8315
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.133743011991636e-4
allele num: 46866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6547
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.568144499178982e-4
allele num: 9135
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 2.53592561284869e-3
allele num: 9464
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 1.064e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 1.375302e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.271e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

FS
type: SiteQuality
SIO_000300: 2.706e0

QD
type: SiteQuality
SIO_000300: 1.801e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.795e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.05e-1

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46283
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4081
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 9.688879319625363e-4
allele num: 9289
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9061
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.709401709401709e-3
allele num: 585
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

VQSLOD
type: SiteQuality
SIO_000300: -5.782e-1

DP
type: SiteQuality
SIO_000300: 1.348662e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.78e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 8.73e-1

QD
type: SiteQuality
SIO_000300: 1.722e1

GenotypeQuality
all individuals: 124
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.216249087813184e-4
allele num: 8222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45933
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.331728e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

QD
type: SiteQuality
SIO_000300: 1.068e1

FS
type: SiteQuality
SIO_000300: 1.486e0

MQRankSum
type: SiteQuality
SIO_000300: 5.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

GenotypeQuality
all individuals: 245
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.888493844718013e-5
allele num: 45002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 567
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8871
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3889
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8957
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 5.842e0

VQSLOD
type: SiteQuality
SIO_000300: -1.463e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.073e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.291455e6

QD
type: SiteQuality
SIO_000300: 2.875e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8809
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3849
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.238390092879257e-4
allele num: 8075
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6291
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.274782e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.681e1

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.759668171282176e-5
allele num: 40985
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7833
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7589
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

DP
type: SiteQuality
SIO_000300: 1.124928e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.576e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.595e-1

QD
type: SiteQuality
SIO_000300: 1.852e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 487
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.266303659617576e-4
allele num: 7897
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7409
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.521940885705639e-5
allele num: 39652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.077688e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.029e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.153e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5317
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37077
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7087
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 1.087695445275323e-3
allele num: 7355
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

DP
type: SiteQuality
SIO_000300: 9.91212e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.725e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 775
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27765
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 323
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.453634950785702e-4
allele num: 5791
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3953
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.336e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

DP
type: SiteQuality
SIO_000300: 7.44305e5

QD
type: SiteQuality
SIO_000300: 1.618e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

FS
type: SiteQuality
SIO_000300: 1.261e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5575
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26313
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3720
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.378378378378379e-3
allele num: 296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4914
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.693275278180939e-3
allele num: 4134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2077
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.438e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.58e-2

FS
type: SiteQuality
SIO_000300: 3.373e0

DP
type: SiteQuality
SIO_000300: 7.04917e5

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 8.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3605
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 279
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.829627309740057e-5
allele num: 25544
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.209e0

QD
type: SiteQuality
SIO_000300: 1.329e1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 1.898e0

DP
type: SiteQuality
SIO_000300: 6.87254e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.84e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.33e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23491
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1797
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3269
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3488
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.73e0

QD
type: SiteQuality
SIO_000300: 9.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.38237e5

MQRankSum
type: SiteQuality
SIO_000300: -1.386e0

VQSLOD
type: SiteQuality
SIO_000300: -6.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2971
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1591
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3817
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.642094513044285e-5
allele num: 21542
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.249e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

DP
type: SiteQuality
SIO_000300: 5.93874e5

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-2

FS
type: SiteQuality
SIO_000300: 1.829e0

QD
type: SiteQuality
SIO_000300: 4.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 6.454944487477407e-5
allele num: 15492
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1018
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2049
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Other
type: Population
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allele frequency: 0.0e0
allele num: 163
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2490
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.65279e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.49e-2

FS
type: SiteQuality
SIO_000300: 5.132e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.725e-1

QD
type: SiteQuality
SIO_000300: 1.856e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1018
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 163
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 15492
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 4.016064257028113e-4
allele num: 2490
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.49e-2

DP
type: SiteQuality
SIO_000300: 4.65279e5

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.856e1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.725e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 15025
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Other
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allele frequency: 0.0e0
allele num: 163
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 982
num of homozygotes: 0

MQ
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.55425e5

VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 1.430410527821485e-4
allele num: 13982
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 909
num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 3.396739130434783e-3
allele num: 1472
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3603
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1832
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.148e0

VQSLOD
type: SiteQuality
SIO_000300: -7.629e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

DP
type: SiteQuality
SIO_000300: 4.37657e5

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.207207207207208e-5
allele num: 13875
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2123
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1820
num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.771618625277162e-4
allele num: 3608
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 905
num of homozygotes: 0

South Asian
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allele count: 31
allele frequency: 2.134986225895317e-2
allele num: 1452
num of homozygotes: 2

DP
type: SiteQuality
SIO_000300: 4.36248e5

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.19e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.876e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1065
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 105
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.076889941847943e-4
allele num: 9286
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 959
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.114e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: -1.839e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

QD
type: SiteQuality
SIO_000300: 1.003e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.19e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 3.46914e5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 807
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2421
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7475
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 653
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.87e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.3e0

DP
type: SiteQuality
SIO_000300: 3.13327e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.76e-1

FS
type: SiteQuality
SIO_000300: 3.522e0

VQSLOD
type: SiteQuality
SIO_000300: -2.521e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26491
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 5.290072297654734e-4
allele num: 5671
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6171
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1804
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.600104004160167e-4
allele num: 3846
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.0959e5

FS
type: SiteQuality
SIO_000300: 9.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.61e-2

QD
type: SiteQuality
SIO_000300: 1.175e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

GenotypeQuality
all individuals: 1222
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 291
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2359
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1833
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.75234521575985e-5
allele num: 26650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.306e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.371e0

QD
type: SiteQuality
SIO_000300: 2.239e1

DP
type: SiteQuality
SIO_000300: 7.19381e5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29579
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6776
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.237637055269635e-4
allele num: 4469
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6113
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 4.829251466022766e-3
allele num: 2899
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.571e0

DP
type: SiteQuality
SIO_000300: 8.56524e5

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-2

QD
type: SiteQuality
SIO_000300: 1.727e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
all individuals: 1231
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4865
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.141986363779181e-5
allele num: 31827
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6419
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.935995302407516e-4
allele num: 3406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

FS
type: SiteQuality
SIO_000300: 3.405e0

VQSLOD
type: SiteQuality
SIO_000300: -2.349e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.72e-1

DP
type: SiteQuality
SIO_000300: 9.29998e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

GenotypeQuality
all individuals: 547
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 8.286148322054964e-4
allele num: 7241
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 357
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2278
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32046
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.398e1

DP
type: SiteQuality
SIO_000300: 9.39284e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 267
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4980
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2302
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32557
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 361
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

DP
type: SiteQuality
SIO_000300: 9.50442e5

VQSLOD
type: SiteQuality
SIO_000300: -1.991e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 5.92434610029918e-5
allele num: 33759
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4057
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

African
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allele frequency: 1.502178158329578e-4
allele num: 6657
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7470
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.933e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.681e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

QD
type: SiteQuality
SIO_000300: 1.383e1

DP
type: SiteQuality
SIO_000300: 9.80629e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2375
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4187
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7519
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.084e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

DP
type: SiteQuality
SIO_000300: 9.89323e5

FS
type: SiteQuality
SIO_000300: 1.367e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.756e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 12

European (Non-Finnish)
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allele count: 18
allele frequency: 5.2337752965806e-4
allele num: 34392
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5211
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2408
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 383
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.518e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

FS
type: SiteQuality
SIO_000300: 1.1055e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2422
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

African
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allele frequency: 1.477759716270134e-4
allele num: 6767
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34587
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5251
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.22e-1

DP
type: SiteQuality
SIO_000300: 1.004773e6

VQSLOD
type: SiteQuality
SIO_000300: -5.934e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5251
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2422
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4499
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6767
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.891259721860815e-5
allele num: 34587
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

DP
type: SiteQuality
SIO_000300: 1.004773e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.27e-1

QD
type: SiteQuality
SIO_000300: 7.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.73e-1

FS
type: SiteQuality
SIO_000300: 8.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.934e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6791
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.876290735467541e-5
allele num: 34767
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5267
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 391
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.008948e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.03e-1

QD
type: SiteQuality
SIO_000300: 1.387e1

FS
type: SiteQuality
SIO_000300: 1.1932e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.57e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 2

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6813
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2460
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 3.777335984095427e-3
allele num: 5030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5285
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 4.551143474798043e-4
allele num: 35156
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.308386759125998e-4
allele num: 7643
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.05e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

FS
type: SiteQuality
SIO_000300: 6.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.769e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
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bin: 9.75e1
variant carriers: 10

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.811515969410706e-5
allele num: 35568
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6891
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.302252897512697e-4
allele num: 7679
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.688555347091932e-3
allele num: 5330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 417
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.029989e6

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

FS
type: SiteQuality
SIO_000300: 1.451e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

QD
type: SiteQuality
SIO_000300: 1.375e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7695
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.741114852225963e-4
allele num: 5346
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6913
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35785
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2509
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.971e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.033233e6

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

FS
type: SiteQuality
SIO_000300: 6.294e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.347e0

QD
type: SiteQuality
SIO_000300: 4.09e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.615769914364195e-4
allele num: 6189
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 427
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5381
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7711
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6964
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 2.814e1

DP
type: SiteQuality
SIO_000300: 1.042223e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5379
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.901677721420211e-4
allele num: 2563
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.260366760284156e-5
allele num: 36318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7691
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6409
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 433
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

FS
type: SiteQuality
SIO_000300: 8.782999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.023e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.378e-1

QD
type: SiteQuality
SIO_000300: 2.272e1

DP
type: SiteQuality
SIO_000300: 1.042518e6

GenotypeQuality
all individuals: 1235
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6965
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.746875429199286e-5
allele num: 36405
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.311e0

DP
type: SiteQuality
SIO_000300: 1.044376e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.49e-1

QD
type: SiteQuality
SIO_000300: 7.82e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.718e0

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36400
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 431
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 3.929273084479371e-4
allele num: 2545
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5400
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
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African
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.041359e6

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.858e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 6968
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.749594434820864e-5
allele num: 36369
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 432
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East Asian
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allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.042471e6

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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South Asian
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Other
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.050408e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.66e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 36543
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African
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num of homozygotes: 0

East Asian
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European (Finnish)
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Other
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DP
type: SiteQuality
SIO_000300: 1.050301e6

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -9.12e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 36518
num of homozygotes: 0

African
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Other
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European (Finnish)
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Latino
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East Asian
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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African
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Other
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

DP
type: SiteQuality
SIO_000300: 1.052478e6

GenotypeQuality
all individuals: 265
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.732016501379668e-5
allele num: 36603
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5420
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.939625260235947e-4
allele num: 7205
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2535
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6995
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

FS
type: SiteQuality
SIO_000300: 7.669e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

QD
type: SiteQuality
SIO_000300: 1.911e1

DP
type: SiteQuality
SIO_000300: 1.06488e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.617e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

GenotypeQuality
all individuals: 179
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7007
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7657
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36849
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.837897445322551e-4
allele num: 5441
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2549
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.067757e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 5.029e0

QD
type: SiteQuality
SIO_000300: 1.998e1

VQSLOD
type: SiteQuality
SIO_000300: -1.765e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 767
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37051
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5467
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7237
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

DP
type: SiteQuality
SIO_000300: 1.078579e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.904e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.605e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e0

GenotypeQuality
all individuals: 22035
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7030
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6994
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.835535976505139e-4
allele num: 5448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7537
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36634
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.829e0

DP
type: SiteQuality
SIO_000300: 1.071981e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 382
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2447
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7001
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7535
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.457088736704065e-4
allele num: 6863
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

QD
type: SiteQuality
SIO_000300: 2.313e1

VQSLOD
type: SiteQuality
SIO_000300: -2.358e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 1.075227e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 2.017e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 909
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2455
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5437
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6815
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6993
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.735304576164556e-5
allele num: 36559
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.074344e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.021e1

GenotypeQuality
all individuals: 1848
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.505546838439728e-5
allele num: 36327
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5405
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2429
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6949
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.060544e6

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.813e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.427e0

GenotypeQuality
all individuals: 1510
bin: 9.75e1
variant carriers: 288

East Asian
type: Population
allele count: 1
allele frequency: 1.87863986473793e-4
allele num: 5323
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 336
allele frequency: 9.371077952865708e-3
allele num: 35855
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.744186046511628e-3
allele num: 6880
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 5.429618569295507e-4
allele num: 7367
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 3.79206825722863e-3
allele num: 6329
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 51
allele frequency: 2.126772310258549e-2
allele num: 2398
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.386634844868735e-3
allele num: 419
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.649e1

VQSLOD
type: SiteQuality
SIO_000300: 9.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.478e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.04891e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

GenotypeQuality
all individuals: 431
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.35464643727987e-4
allele num: 7382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5324
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.043778e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.467e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.900000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.812e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

GenotypeQuality
all individuals: 1762
bin: 2.75e1
variant carriers: 20

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 294
allele frequency: 8.33545972612061e-3
allele num: 35271
num of homozygotes: 2

South Asian
type: Population
allele count: 3
allele frequency: 4.989190088142358e-4
allele num: 6013
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.358490566037736e-3
allele num: 424
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.606777680397312e-3
allele num: 6846
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 4.127682993946065e-4
allele num: 7268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 85
allele frequency: 3.601694915254237e-2
allele num: 2360
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.003e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.534e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.143e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 1.024401e6

QD
type: SiteQuality
SIO_000300: 1.552e1

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5261
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6837
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35215
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 5.506607929515419e-4
allele num: 7264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 421
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2325
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.123e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

DP
type: SiteQuality
SIO_000300: 1.019354e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

FS
type: SiteQuality
SIO_000300: 6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

GenotypeQuality
all individuals: 384
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5037
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6895
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.913715236510577e-5
allele num: 33656
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-2

DP
type: SiteQuality
SIO_000300: 9.58833e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

QD
type: SiteQuality
SIO_000300: 1.239e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 393
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.787416587225929e-4
allele num: 33568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2156
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

DP
type: SiteQuality
SIO_000300: 9.53304e5

QD
type: SiteQuality
SIO_000300: 1.217e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 6.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

GenotypeQuality
all individuals: 299
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.352667046635599e-5
allele num: 29827
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 333
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4066
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.167e0

VQSLOD
type: SiteQuality
SIO_000300: -4.618e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 8.08753e5

QD
type: SiteQuality
SIO_000300: 1.004e1

GenotypeQuality
all individuals: 970
bin: 6.75e1
variant carriers: 12

European (Non-Finnish)
type: Population
allele count: 73
allele frequency: 2.458077985049498e-3
allele num: 29698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1811
num of homozygotes: 0

African
type: Population
allele count: 954
allele frequency: 1.541195476575121e-1
allele num: 6190
num of homozygotes: 51

East Asian
type: Population
allele count: 19
allele frequency: 4.264870931537598e-3
allele num: 4455
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 9.09090909090909e-3
allele num: 330
num of homozygotes: 0

South Asian
type: Population
allele count: 32
allele frequency: 7.911001236093944e-3
allele num: 4045
num of homozygotes: 0

Latino
type: Population
allele count: 52
allele frequency: 8.647929486113421e-3
allele num: 6013
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.21053e5

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.59e0

FS
type: SiteQuality
SIO_000300: 1.321e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

QD
type: SiteQuality
SIO_000300: 1.643e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.972e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.35e-1

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1453
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25873
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3925
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2991
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.67e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.454e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.56e-2

DP
type: SiteQuality
SIO_000300: 6.76515e5

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5437
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.856090695253153e-5
allele num: 25933
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3941
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5223
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.51e-2

FS
type: SiteQuality
SIO_000300: 2.556e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.35e-1

DP
type: SiteQuality
SIO_000300: 6.74344e5

QD
type: SiteQuality
SIO_000300: 8.81e0

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.02e-1

GenotypeQuality
all individuals: 334
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3717
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.086135741429331e-5
allele num: 24473
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5203
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 261
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2701
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4922
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.493e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 1.016e1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 6.4456e5

MQ
type: SiteQuality
SIO_000300: 4.86e1

GenotypeQuality
all individuals: 213
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1297
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.127455836222553e-5
allele num: 24228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2634
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

QD
type: SiteQuality
SIO_000300: 1.053e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.03e-2

FS
type: SiteQuality
SIO_000300: 3.203e0

DP
type: SiteQuality
SIO_000300: 6.4382e5

GenotypeQuality
all individuals: 245
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4061
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.675300388049932e-5
allele num: 21389
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1055
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4689
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 2.861e1

VQSLOD
type: SiteQuality
SIO_000300: -2.138e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

DP
type: SiteQuality
SIO_000300: 5.99904e5

FS
type: SiteQuality
SIO_000300: 8.015000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 178
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3589
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2905
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19829
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1006
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.93683e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.71e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.004e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 6.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
all individuals: 556
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4301
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 5.583472920156337e-4
allele num: 1791
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3413
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2799
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.76e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.634e0

VQSLOD
type: SiteQuality
SIO_000300: -3.012e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

DP
type: SiteQuality
SIO_000300: 5.92954e5

QD
type: SiteQuality
SIO_000300: 4.2e0

GenotypeQuality
all individuals: 826
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20295
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1235
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4245
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4541
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.172e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.92e-1

DP
type: SiteQuality
SIO_000300: 5.4802e5

QD
type: SiteQuality
SIO_000300: 1.396e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.45e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 377
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 3.437269825681316e-4
allele num: 20365
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2945
num of homozygotes: 0

African
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allele count: 2
allele frequency: 4.659832246039142e-4
allele num: 4292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1240
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.065040650406504e-3
allele num: 246
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.219e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 1.443e1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 5.53092e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-2

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

African
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allele count: 14
allele frequency: 3.102149346332816e-3
allele num: 4513
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1379
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2421
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4841
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.642525533890436e-5
allele num: 21540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3136
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.53e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.061e0

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

DP
type: SiteQuality
SIO_000300: 6.14241e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.326e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 180
bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1413
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4590
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European (Non-Finnish)
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allele count: 1
allele frequency: 4.550625711035268e-5
allele num: 21975
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.894080996884735e-4
allele num: 2568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
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DP
type: SiteQuality
SIO_000300: 6.37314e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 2.808e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

GenotypeQuality
all individuals: 3477
bin: 2.75e1
variant carriers: 14

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.019131063863993e-5
allele num: 24881
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1684
num of homozygotes: 0

African
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allele count: 4
allele frequency: 7.829320806420043e-4
allele num: 5109
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.644979041370512e-4
allele num: 5487
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 1.444669170759896e-3
allele num: 3461
num of homozygotes: 0

East Asian
type: Population
allele count: 213
allele frequency: 5.600841440967657e-2
allele num: 3803
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 309
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

FS
type: SiteQuality
SIO_000300: 3.731e0

QD
type: SiteQuality
SIO_000300: 1.6e1

DP
type: SiteQuality
SIO_000300: 7.36321e5

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.77e-2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 351
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 27433
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1896
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South Asian
type: Population
allele count: 2
allele frequency: 4.543389368468878e-4
allele num: 4402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5547
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4199
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.044e-1

FS
type: SiteQuality
SIO_000300: 2.046e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.04164e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 1.732e1