19-50979674-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979674
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979674
    reference: chr 19
allele count: 1
allele frequency: 1.017521724088809e-5
allele num: 98278
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-29G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-29G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-128C>T
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14369
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4115
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

19-50979675-GGGTGCCAGTGCGCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979675
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979661
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 98138
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4113
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: GGGTGCCAGTGCGCA
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

19-50979676-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979676
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979676
    reference: chr 19
allele count: 1
allele frequency: 1.019139438657997e-5
allele num: 98122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-126G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-31C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-31C>T
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13864
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4117
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1975
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
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genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5109
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-50979678-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979678
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979678
    reference: chr 19
allele count: 4
allele frequency: 4.086135741429331e-5
allele num: 97892
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-33A>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-124T>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-33A>C
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2665
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1945
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3526
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4211
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 381
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4956
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-50979679-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979679
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979679
    reference: chr 19
allele count: 2
allele frequency: 2.046119534303194e-5
allele num: 97746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-123G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-34C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-34C>T
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8226
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4108
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3622
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2467
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-50979692-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979692
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979692
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 96384
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-47A>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-110T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-47A>G
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8170
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7973
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3866
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3736
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4288
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4506
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3900
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8706
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-50979695-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979695
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979695
    reference: chr 19
allele count: 13
allele frequency: 1.363140676117775e-4
allele num: 95368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-107C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-50G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-50G>A
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4097
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4367
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7256
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4579
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3768
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 9.75e1
  variant carriers: 13
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

19-50979696-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979696
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979696
    reference: chr 19
allele count: 1
allele frequency: 1.04834989726171e-5
allele num: 95388
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-106G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4382
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7462
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3570
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3745
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

19-50979755-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979755
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979755
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 42280
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-110G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-110G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26065
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4888
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4488
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-50979758-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979758
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979758
    reference: chr 19
allele count: 1
allele frequency: 2.411265432098765e-5
allele num: 41472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-44C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-113G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-113G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-44C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-44C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-44C>G
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26402
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3380
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

19-50979758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979758
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979758
    reference: chr 19
allele count: 1
allele frequency: 2.411265432098765e-5
allele num: 41472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-113G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-44C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-44C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-113G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12326
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26402
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10949
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3112
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 3380
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

19-50979760-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979760
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979760
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 40996
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-115G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-115G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-42C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-42C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-42C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-42C>G
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26507
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 11850
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 1876
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 963
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-50979763-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979763
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979763
    reference: chr 19
allele count: 1
allele frequency: 2.516862981979261e-5
allele num: 39732
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-118C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-118C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-39G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-39G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11533
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3345
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3556
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26466
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

19-50979765-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979765
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979765
    reference: chr 19
allele count: 28
allele frequency: 7.207949338413222e-4
allele num: 38846
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-37C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-120G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-37C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-37C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-37C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-120G>C
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26815
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12430
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11485
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5106
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11775
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26166
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3704
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

19-50979767-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979767
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979767
    reference: chr 19
allele count: 1
allele frequency: 2.645922633222205e-5
allele num: 37794
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-122G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-35C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-35C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-35C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-35C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-122G>C
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 3601
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 131
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genotype quality: GenotypeQuality
  all individuals: 276
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genotype quality: GenotypeQuality
  all individuals: 24
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genotype quality: GenotypeQuality
  all individuals: 4999
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4350
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

19-50979772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979772
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979772
    reference: chr 19
allele count: 5
allele frequency: 1.380834023750345e-4
allele num: 36210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-127G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-127G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-30C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-30C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-30C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-30C>T
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12868
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4193
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 3686
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25277
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

19-50979773-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979773
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979773
    reference: chr 19
allele count: 34
allele frequency: 9.512085944494181e-4
allele num: 35744
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-29C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-29C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-128G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-29C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-29C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-128G>C
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27669
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 12924
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4565
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12413
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 3
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

19-50979773-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979773
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979773
    reference: chr 19
allele count: 1
allele frequency: 2.797672336615936e-5
allele num: 35744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-128G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-29C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-29C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-128G>A
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12924
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24845
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12413
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

19-50979773-CGTCCCTTCGCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979773
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979762
    reference: chr 19
allele count: 1
allele frequency: 2.797672336615936e-5
allele num: 35744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27669
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12924
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4565
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24845
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12413
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: CGTCCCTTCGCT
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

19-50979776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979776
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979776
    reference: chr 19
allele count: 3
allele frequency: 8.503883440104314e-5
allele num: 35278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-26C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-26C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-26C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-131G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-26C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-131G>A
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10047
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12986
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 25916
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12591
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3940
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3526
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-50979777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979777
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979777
    reference: chr 19
allele count: 1
allele frequency: 2.853392683901159e-5
allele num: 35046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-25C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-25C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-132G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-132G>A
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28122
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3471
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3837
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12615
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-50979781-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979781
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979781
    reference: chr 19
allele count: 16
allele frequency: 4.703392321712035e-4
allele num: 34018
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-21C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-136G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-136G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-21C>T
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9563
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28528
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4005
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5092
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12604
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-50979782-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979782
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979782
    reference: chr 19
allele count: 1
allele frequency: 2.963841138114997e-5
allele num: 33740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-20G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-20G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-137C>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-20G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-20G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-137C>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.-20G>C
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12947
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12608
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3757
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26623
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-50979783-C-CTGGTGGGAAGAAGCCGAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979783
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979802
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 33776
alternate allele: CTGGTGGGAAGAAGCCGAGA
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsp: ENSP00000470949.1:p.Ala2ValfsTer27
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsp: ENSP00000470164.1:p.Ala2ValfsTer65
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsp: ENSP00000472420.1:p.Ala2ValfsTer66
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsp: ENSP00000334037.5:p.Ala2ValfsTer66
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsp: ENSP00000366117.2:p.Ala2ValfsTer66
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28858
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12618
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala2ValfsTer66
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

19-50979783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979783
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979783
    reference: chr 19
allele count: 1
allele frequency: 2.960682141165325e-5
allele num: 33776
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-138G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-138G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-19C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-19C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.-19C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-19C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-19C>T
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5173
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

19-50979784-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979784
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979784
    reference: chr 19
allele count: 1
allele frequency: 2.961208172934557e-5
allele num: 33770
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-139A>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-18T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-18T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.-18T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-18T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-139A>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-18T>C
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9365
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27419
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12559
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

19-50979788-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979788
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979788
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 33154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-143C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-14G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.-14G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-14G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-143C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-14G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-14G>A
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29339
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

19-50979793-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979793
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979793
    reference: chr 19
allele count: 1
allele frequency: 3.070310101320233e-5
allele num: 32570
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-9G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-148C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-148C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.-9G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.-9G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-9G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-9G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-9G>A
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29615
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12390
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2698
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

19-50979796-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979796
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979796
    reference: chr 19
allele count: 40
allele frequency: 1.232361821430772e-3
allele num: 32458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-6G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.-6G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-151C>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-6G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-6G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.-6G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-6G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-151C>G
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29749
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12651
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5270
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3542
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 9.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 3
num of homozygotes: 1
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

19-50979796-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979796
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979796
    reference: chr 19
allele count: 2
allele frequency: 6.161809107153861e-5
allele num: 32458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-6G>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-6G>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-151C>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-6G>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.-6G>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-6G>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.-6G>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-151C>A
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

19-50979798-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979798
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979798
    reference: chr 19
allele count: 106
allele frequency: 3.270595495217525e-3
allele num: 32410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-153G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-4C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-4C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.-4C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-4C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-153G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.-4C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-4C>G
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29922
  bin: 7.5e0
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 1.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12520
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 5370
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12355
  bin: 7.5e0
  variant carriers: 4
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

19-50979801-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979801
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979801
    reference: chr 19
allele count: 11
allele frequency: 3.432565686825189e-4
allele num: 32046
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-156C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.-1G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.-1G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.-1G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.-1G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.-1G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.-1G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-156C>T
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8511
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30190
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12231
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

19-50979802-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979802
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979802
    reference: chr 19
allele count: 5
allele frequency: 1.553084425669379e-4
allele num: 32194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.1A>G
  hgvsp: ENSP00000366117.2:p.Met1?
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.1A>G
  hgvsp: ENSP00000472714.1:p.Met1?
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.1A>G
  hgvsp: ENSP00000472420.1:p.Met1?
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.1A>G
  hgvsp: ENSP00000470949.1:p.Met1?
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-157T>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.1A>G
  hgvsp: ENSP00000470164.1:p.Met1?
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-157T>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.1A>G
  hgvsp: ENSP00000334037.5:p.Met1?
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30310
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

19-50979803-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979803
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979803
    reference: chr 19
allele count: 2
allele frequency: 6.228201295465869e-5
allele num: 32112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.2T>G
  hgvsp: ENSP00000472714.1:p.Met1?
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-158A>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.2T>G
  hgvsp: ENSP00000470164.1:p.Met1?
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.2T>G
  hgvsp: ENSP00000470949.1:p.Met1?
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.2T>G
  hgvsp: ENSP00000472420.1:p.Met1?
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.2T>G
  hgvsp: ENSP00000366117.2:p.Met1?
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-158A>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.2T>G
  hgvsp: ENSP00000334037.5:p.Met1?
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: start lost
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

19-50979808-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979808
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979808
    reference: chr 19
allele count: 1
allele frequency: 3.209654641160611e-5
allele num: 31156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.7G>T
  hgvsp: ENSP00000472420.1:p.Ala3Ser
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-163C>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.7G>T
  hgvsp: ENSP00000472714.1:p.Ala3Ser
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.7G>T
  hgvsp: ENSP00000470949.1:p.Ala3Ser
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.7G>T
  hgvsp: ENSP00000470164.1:p.Ala3Ser
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.7G>T
  hgvsp: ENSP00000366117.2:p.Ala3Ser
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.7G>T
  hgvsp: ENSP00000334037.5:p.Ala3Ser
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-163C>A
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala3Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

19-50979818-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979818
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979818
    reference: chr 19
allele count: 1
allele frequency: 3.197544285988361e-5
allele num: 31274
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.17C>T
  hgvsp: ENSP00000334037.5:p.Ala6Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-173G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.17C>T
  hgvsp: ENSP00000470164.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.17C>T
  hgvsp: ENSP00000470949.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.17C>T
  hgvsp: ENSP00000472714.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.17C>T
  hgvsp: ENSP00000472420.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-173G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.17C>T
  hgvsp: ENSP00000366117.2:p.Ala6Val
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31444
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11647
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala6Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

19-50979822-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979822
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979822
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 31050
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-177C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.21G>A
  hgvsp: ENST00000601780.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-177C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.21G>A
  hgvsp: ENST00000597426.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.21G>A
  hgvsp: ENST00000334976.6:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.21G>A
  hgvsp: ENST00000599293.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.21G>A
  hgvsp: ENST00000598585.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.21G>A
  hgvsp: ENST00000376918.3:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31439
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5632
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly7Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/19-50979827-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979827
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979827
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 30696
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.26C>A
  hgvsp: ENSP00000334037.5:p.Thr9Asn
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-182G>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.26C>A
  hgvsp: ENSP00000472714.1:p.Thr9Asn
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.26C>A
  hgvsp: ENSP00000472420.1:p.Thr9Asn
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-182G>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.26C>A
  hgvsp: ENSP00000470949.1:p.Thr9Asn
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.26C>A
  hgvsp: ENSP00000470164.1:p.Thr9Asn
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.26C>A
  hgvsp: ENSP00000366117.2:p.Thr9Asn
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31430
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30892
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr9Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

19-50979829-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979829
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979829
    reference: chr 19
allele count: 1
allele frequency: 3.249918752031199e-5
allele num: 30770
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-184G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.28C>G
  hgvsp: ENSP00000472420.1:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.28C>G
  hgvsp: ENSP00000366117.2:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.28C>G
  hgvsp: ENSP00000470164.1:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-184G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.28C>G
  hgvsp: ENSP00000472714.1:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.28C>G
  hgvsp: ENSP00000470949.1:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.28C>G
  hgvsp: ENSP00000334037.5:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11817
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg10Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

19-50979831-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979831
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979831
    reference: chr 19
allele count: 1
allele frequency: 3.286014721345952e-5
allele num: 30432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.30G>C
  hgvsp: ENST00000598585.1:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.30G>C
  hgvsp: ENST00000599293.1:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-186C>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.30G>C
  hgvsp: ENST00000376918.3:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.30G>C
  hgvsp: ENST00000334976.6:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.30G>C
  hgvsp: ENST00000597426.1:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.30G>C
  hgvsp: ENST00000601780.1:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-186C>G
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg10Arg
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

19-50979832-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979832
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979832
    reference: chr 19
allele count: 1
allele frequency: 3.295978905735003e-5
allele num: 30340
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.31C>T
  hgvsp: ENST00000334976.6:c.31C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-187G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.31C>T
  hgvsp: ENST00000598585.1:c.31C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.31C>T
  hgvsp: ENST00000597426.1:c.31C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.31C>T
  hgvsp: ENST00000376918.3:c.31C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.31C>T
  hgvsp: ENST00000601780.1:c.31C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-187G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.31C>T
  hgvsp: ENST00000599293.1:c.31C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu11Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-50979834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979834
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979834
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 30712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.33G>A
  hgvsp: ENST00000597426.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-189C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.33G>A
  hgvsp: ENST00000599293.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.33G>A
  hgvsp: ENST00000376918.3:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.33G>A
  hgvsp: ENST00000601780.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.33G>A
  hgvsp: ENST00000598585.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.33G>A
  hgvsp: ENST00000334976.6:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-189C>T
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11767
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11681
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu11Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-50979835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979835
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979835
    reference: chr 19
allele count: 1
allele frequency: 3.263068589701755e-5
allele num: 30646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.34C>T
  hgvsp: ENSP00000470949.1:p.Leu12Phe
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-190G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.34C>T
  hgvsp: ENSP00000470164.1:p.Leu12Phe
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-190G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.34C>T
  hgvsp: ENSP00000472420.1:p.Leu12Phe
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.34C>T
  hgvsp: ENSP00000472714.1:p.Leu12Phe
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.34C>T
  hgvsp: ENSP00000334037.5:p.Leu12Phe
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.34C>T
  hgvsp: ENSP00000366117.2:p.Leu12Phe
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32827
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu12Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

19-50979849-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979849
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979849
    reference: chr 19
allele count: 3
allele frequency: 1.055594651653765e-4
allele num: 28420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.48G>T
  hgvsp: ENST00000601780.1:c.48G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.48G>T
  hgvsp: ENST00000597426.1:c.48G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.48G>T
  hgvsp: ENST00000598585.1:c.48G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.48G>T
  hgvsp: ENST00000599293.1:c.48G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.48G>T
  hgvsp: ENST00000376918.3:c.48G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-204C>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-204C>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.48G>T
  hgvsp: ENST00000334976.6:c.48G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu16Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

19-50979854-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979854
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979854
    reference: chr 19
allele count: 1
allele frequency: 3.698772007693446e-5
allele num: 27036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-209G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-209G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.53C>T
  hgvsp: ENSP00000472420.1:p.Ala18Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.53C>T
  hgvsp: ENSP00000334037.5:p.Ala18Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.53C>T
  hgvsp: ENSP00000470164.1:p.Ala18Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.53C>T
  hgvsp: ENSP00000366117.2:p.Ala18Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.53C>T
  hgvsp: ENSP00000472714.1:p.Ala18Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.53C>T
  hgvsp: ENSP00000470949.1:p.Ala18Val
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13613
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala18Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

19-50979855-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979855
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979855
    reference: chr 19
allele count: 6
allele frequency: 2.214675919090506e-4
allele num: 27092
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.54G>C
  hgvsp: ENST00000601780.1:c.54G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54G>C
  hgvsp: ENST00000597426.1:c.54G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.54G>C
  hgvsp: ENST00000599293.1:c.54G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.54G>C
  hgvsp: ENST00000376918.3:c.54G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.54G>C
  hgvsp: ENST00000598585.1:c.54G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-210C>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-210C>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.54G>C
  hgvsp: ENST00000334976.6:c.54G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30630
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
hgvs: c.54G>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

19-50979869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979869
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979869
    reference: chr 19
allele count: 1
allele frequency: 4.089979550102249e-5
allele num: 24450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-224C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.68G>A
  hgvsp: ENSP00000334037.5:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.68G>A
  hgvsp: ENSP00000470164.1:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.68G>A
  hgvsp: ENSP00000366117.2:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.68G>A
  hgvsp: ENSP00000472420.1:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-224C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+14G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.68G>A
  hgvsp: ENSP00000472714.1:p.Ser23Asn
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14824
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser23Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

19-50979877-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979877
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979877
    reference: chr 19
allele count: 1
allele frequency: 4.463488662738796e-5
allele num: 22404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.76C>T
  hgvsp: ENSP00000472714.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-232G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.76C>T
  hgvsp: ENSP00000334037.5:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.76C>T
  hgvsp: ENSP00000366117.2:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+22C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.76C>T
  hgvsp: ENSP00000472420.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.76C>T
  hgvsp: ENSP00000470164.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-232G>A
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7895
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg26Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

19-50979878-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979878
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979878
    reference: chr 19
allele count: 1
allele frequency: 4.387889425186486e-5
allele num: 22790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.77G>T
  hgvsp: ENSP00000470164.1:p.Arg26Leu
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.77G>T
  hgvsp: ENSP00000472714.1:p.Arg26Leu
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.77G>T
  hgvsp: ENSP00000472420.1:p.Arg26Leu
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-233C>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-233C>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.77G>T
  hgvsp: ENSP00000334037.5:p.Arg26Leu
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.77G>T
  hgvsp: ENSP00000366117.2:p.Arg26Leu
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+23G>T
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15469
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg26Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

19-50979881-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979881
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979881
    reference: chr 19
allele count: 1
allele frequency: 4.536793394428818e-5
allele num: 22042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.80G>A
  hgvsp: ENSP00000366117.2:p.Gly27Asp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.80G>A
  hgvsp: ENSP00000470164.1:p.Gly27Asp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.80G>A
  hgvsp: ENSP00000472714.1:p.Gly27Asp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.80G>A
  hgvsp: ENSP00000472420.1:p.Gly27Asp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.80G>A
  hgvsp: ENSP00000334037.5:p.Gly27Asp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-236C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-236C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+26G>A
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15987
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly27Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

19-50979888-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979888
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979888
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 20734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.87C>T
  hgvsp: ENST00000598585.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.87C>T
  hgvsp: ENST00000601780.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.87C>T
  hgvsp: ENST00000376918.3:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-243G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-243G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+33C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.87C>T
  hgvsp: ENST00000334976.6:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.87C>T
  hgvsp: ENST00000599293.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30151
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16816
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly29Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

19-50979892-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979892
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979892
    reference: chr 19
allele count: 5
allele frequency: 2.557021581262146e-4
allele num: 19554
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-247G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.91C>T
  hgvsp: ENSP00000472714.1:p.Arg31Trp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+37C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.91C>T
  hgvsp: ENSP00000366117.2:p.Arg31Trp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.91C>T
  hgvsp: ENSP00000334037.5:p.Arg31Trp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.91C>T
  hgvsp: ENSP00000470164.1:p.Arg31Trp
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-247G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.91C>T
  hgvsp: ENSP00000472420.1:p.Arg31Trp
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7484
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30031
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17154
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30229
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg31Trp
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

19-50979893-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979893
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979893
    reference: chr 19
allele count: 1
allele frequency: 5.099959200326397e-5
allele num: 19608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.92G>A
  hgvsp: ENSP00000472420.1:p.Arg31Gln
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.92G>A
  hgvsp: ENSP00000334037.5:p.Arg31Gln
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.92G>A
  hgvsp: ENSP00000472714.1:p.Arg31Gln
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-248C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-248C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+38G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.92G>A
  hgvsp: ENSP00000470164.1:p.Arg31Gln
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.92G>A
  hgvsp: ENSP00000366117.2:p.Arg31Gln
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17475
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17320
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg31Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

19-50979896-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979896
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979896
    reference: chr 19
allele count: 1
allele frequency: 5.246039240373518e-5
allele num: 19062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.95C>T
  hgvsp: ENSP00000472420.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.95C>T
  hgvsp: ENSP00000472714.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-251G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.95C>T
  hgvsp: ENSP00000334037.5:p.Ala32Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.95C>T
  hgvsp: ENSP00000470164.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-251G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+41C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.95C>T
  hgvsp: ENSP00000366117.2:p.Ala32Val
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17907
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30753
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala32Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

19-50979900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979900
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979900
    reference: chr 19
allele count: 10
allele frequency: 5.436555398499511e-4
allele num: 18394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.99G>A
  hgvsp: ENST00000376918.3:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+45G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.99G>A
  hgvsp: ENST00000601780.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.99G>A
  hgvsp: ENST00000599293.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.99G>A
  hgvsp: ENST00000598585.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-255C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.99G>A
  hgvsp: ENST00000334976.6:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-255C>T
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29528
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7271
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 18833
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly33Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS

19-50979904-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979904
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979904
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 17206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.103G>A
  hgvsp: ENSP00000366117.2:p.Gly35Ser
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+49G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-259C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.103G>A
  hgvsp: ENSP00000472420.1:p.Gly35Ser
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-259C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.103G>A
  hgvsp: ENSP00000334037.5:p.Gly35Ser
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.103G>A
  hgvsp: ENSP00000470164.1:p.Gly35Ser
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.103G>A
  hgvsp: ENSP00000472714.1:p.Gly35Ser
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28396
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28461
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20186
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly35Ser
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-50979907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979907
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979907
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 16828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.106G>A
  hgvsp: ENSP00000472420.1:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+52G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-262C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.106G>A
  hgvsp: ENSP00000470164.1:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.106G>A
  hgvsp: ENSP00000472714.1:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.106G>A
  hgvsp: ENSP00000366117.2:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-262C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.106G>A
  hgvsp: ENSP00000334037.5:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28196
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28503
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala36Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-50979908-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979908
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979908
    reference: chr 19
allele count: 28
allele frequency: 1.703992210321324e-3
allele num: 16432
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-263G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.107C>G
  hgvsp: ENSP00000472714.1:p.Ala36Gly
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.107C>G
  hgvsp: ENSP00000472420.1:p.Ala36Gly
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.107C>G
  hgvsp: ENSP00000470164.1:p.Ala36Gly
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.107C>G
  hgvsp: ENSP00000366117.2:p.Ala36Gly
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+53C>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-263G>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.107C>G
  hgvsp: ENSP00000334037.5:p.Ala36Gly
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27998
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21336
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28140
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 2
hgvs: p.Ala36Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

19-50979912-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979912
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979913
    reference: chr 19
allele count: 2
allele frequency: 1.280081925243216e-4
allele num: 15624
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.115dupG
  hgvsp: ENSP00000472714.1:p.Val39GlyfsTer22
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.114+1dupG
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.114+1dupG
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-268dupC
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-268dupC
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.115dupG
  hgvsp: ENSP00000470164.1:p.Val39GlyfsTer22
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.114+1dupG
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+61dupG
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27283
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27491
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-50979916-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979916
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979916
    reference: chr 19
allele count: 2
allele frequency: 1.330494944119212e-4
allele num: 15032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-271C>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.114+1G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.115G>C
  hgvsp: ENSP00000472714.1:p.Val39Leu
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.114+1G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.114+1G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.115G>C
  hgvsp: ENSP00000470164.1:p.Val39Leu
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+61G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-271C>G
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27071
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 2.5e0
  variant carriers: 0
hgvs: c.114+1G>C
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

19-50979928-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979928
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979928
    reference: chr 19
allele count: 1
allele frequency: 8.863676653075696e-5
allele num: 11282
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.114+13T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.127T>C
  hgvsp: ENSP00000470164.1:p.Ter43GlnextTer83
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-283A>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-283A>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.114+13T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+73T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.127T>C
  hgvsp: ENSP00000472714.1:p.Ter43GlnextTer83
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.114+13T>C
  variant of: http://identifiers.org/hgnc/27609
canonical: false
consequence: stop lost
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29832
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21044
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ter43GlnextTer83
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

19-50979939-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979939
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979939
    reference: chr 19
allele count: 3
allele frequency: 3.345973678340397e-4
allele num: 8966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.114+24A>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-294T>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.114+24A>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.114+24A>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+84A>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-294T>C
  variant of: http://identifiers.org/hgnc/25107
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17932
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15697
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33175
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

19-50979946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979946
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979946
    reference: chr 19
allele count: 1
allele frequency: 1.533272002453235e-4
allele num: 6522
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-301C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.114+31G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.114+31G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-301C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+91G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.114+31G>A
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35341
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

19-50979961-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979961
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979961
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 3490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.114+46C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-316G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.114+46C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+106C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-316G>A
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.114+46C>T
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38214
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4931
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

19-50979966-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979966
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979966
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 2860
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.*36G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.114+51G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.114+51G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+111G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.114+51G>A
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-321C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-321C>T
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.*36G>A
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12027
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37968
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3888
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6833
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4635
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

19-50979971-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979971
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979971
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 2668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.*41G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-326C>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.114+56G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.114+56G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+116G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-326C>G
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.114+56G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.*41G>C
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11965
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37815
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31363
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4813
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

19-50979974-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50979974
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50979974
    reference: chr 19
allele count: 1
allele frequency: 3.843197540353574e-4
allele num: 2602
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.*44T>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.*44T>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.114+59T>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.114+59T>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000472421
  ensembl transcript: ENST00000600100
  gene symbol: FAM71E1
  hgvsc: ENST00000600100.1:c.-329A>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000142530
  ensembl protein: ENSP00000471272
  ensembl transcript: ENST00000595790
  gene symbol: FAM71E1
  hgvsc: ENST00000595790.1:c.-329A>C
  variant of: http://identifiers.org/hgnc/25107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+119T>G
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.114+59T>G
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30762
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

19-50980358-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50980358
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50980357
    reference: chr 19
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.*50+394delA
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000471764
  ensembl transcript: ENST00000597799
  gene symbol: EMC10
  hgvsc: ENST00000597799.1:c.-22delA
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.*50+394delA
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.114+459delA
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.114+459delA
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+519delA
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.114+459delA
  variant of: http://identifiers.org/hgnc/27609
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.5e0
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: TA
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

19-50980358-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50980358
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50980356
    reference: chr 19
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000471764
  ensembl transcript: ENST00000597799
  gene symbol: EMC10
  hgvsc: ENST00000597799.1:c.-23_-22delAA
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.114+458_114+459delAA
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.114+458_114+459delAA
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.114+458_114+459delAA
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+518_54+519delAA
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.*50+393_*50+394delAA
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.*50+393_*50+394delAA
  variant of: http://identifiers.org/hgnc/27609
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: TAA
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

19-50980414-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50980414
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50980414
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 2
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.*50+434C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.114+499C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.114+499C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000471764
  ensembl transcript: ENST00000597799
  gene symbol: EMC10
  hgvsc: ENST00000597799.1:c.19C>T
  hgvsp: ENSP00000471764.1:p.Leu7Phe
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.*50+434C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.114+499C>T
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.54+559C>T
  variant of: http://identifiers.org/hgnc/27609
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu7Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

19-50981136-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50981136
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50981136
    reference: chr 19
allele count: 1
allele frequency: 8.922039221284417e-6
allele num: 112082
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.115-50T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.*51-50T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.55-107T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.115-50T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.*51-50T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000471764
  ensembl transcript: ENST00000597799
  gene symbol: EMC10
  hgvsc: ENST00000597799.1:c.84-50T>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.115-50T>C
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10317
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8509
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4728
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3907
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS

19-50981149-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50981149
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50981149
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 112880
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470164
  ensembl transcript: ENST00000601780
  gene symbol: EMC10
  hgvsc: ENST00000601780.1:c.*51-37G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000366117
  ensembl transcript: ENST00000376918
  gene symbol: EMC10
  hgvsc: ENST00000376918.3:c.115-37G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000334037
  ensembl transcript: ENST00000334976
  gene symbol: EMC10
  hgvsc: ENST00000334976.6:c.115-37G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472420
  ensembl transcript: ENST00000598585
  gene symbol: EMC10
  hgvsc: ENST00000598585.1:c.115-37G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000471764
  ensembl transcript: ENST00000597799
  gene symbol: EMC10
  hgvsc: ENST00000597799.1:c.84-37G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000472714
  ensembl transcript: ENST00000599293
  gene symbol: EMC10
  hgvsc: ENST00000599293.1:c.*51-37G>C
  variant of: http://identifiers.org/hgnc/27609
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161671
  ensembl protein: ENSP00000470949
  ensembl transcript: ENST00000597426
  gene symbol: EMC10
  hgvsc: ENST00000597426.1:c.55-94G>C
  variant of: http://identifiers.org/hgnc/27609
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 8464
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56310
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.293326435592343e-4
allele num: 7732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.550000000000001e0

DP
type: SiteQuality
SIO_000300: 1.351545e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

VQSLOD
type: SiteQuality
SIO_000300: -1.394e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 0.0e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 3.56e0

MQ
type: SiteQuality
SIO_000300: 5.229e1

FS
type: SiteQuality
SIO_000300: 4.028e0

VQSLOD
type: SiteQuality
SIO_000300: -2.29e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.340417e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10918
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.303441084462982e-4
allele num: 7672
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

FS
type: SiteQuality
SIO_000300: 2.207e0

DP
type: SiteQuality
SIO_000300: 1.339549e6

MQRankSum
type: SiteQuality
SIO_000300: -1.156e0

QD
type: SiteQuality
SIO_000300: 2.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.27807486631016e-4
allele num: 9350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56024
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.580000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 1.32719e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

FS
type: SiteQuality
SIO_000300: 4.219e0

QD
type: SiteQuality
SIO_000300: 9.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.13e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.78788528927984e-5
allele num: 55932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.179364787956673e-5
allele num: 10894
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.775e0

QD
type: SiteQuality
SIO_000300: 1.78e1

FS
type: SiteQuality
SIO_000300: 1.356e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.323815e6

MQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.935e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5250
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.634e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.257114e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.979e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.488e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.497005988023952e-3
allele num: 7348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.845972088902016e-5
allele num: 54172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5184
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.055520371543171e-4
allele num: 9474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 9.88e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

DP
type: SiteQuality
SIO_000300: 1.251145e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.847199645337668e-5
allele num: 54136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

QD
type: SiteQuality
SIO_000300: 1.369e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.909999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.11e-1

FS
type: SiteQuality
SIO_000300: 3.522e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

DP
type: SiteQuality
SIO_000300: 1.251791e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25714
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GenotypeQuality
all individuals: 871
bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10794
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

DP
type: SiteQuality
SIO_000300: 5.85498e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -6.872e-1

QD
type: SiteQuality
SIO_000300: 1.038e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.53e-2

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20024
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.337068160597572e-5
allele num: 10710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2432
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2480
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.388e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.683e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2432
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2480
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10710
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4094
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.994007191370355e-5
allele num: 20024
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1396
num of homozygotes: 0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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SIO_000300: 5.8096e5

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1392
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 19736
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10674
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 5.773e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.808e0

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1324
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 5.262050094716901e-5
allele num: 19004
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3884
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10554
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.58e-2

FS
type: SiteQuality
SIO_000300: 2.158e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2262
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.659574468085106e-4
allele num: 3760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10494
num of homozygotes: 0

African
type: Population
allele count: 27
allele frequency: 1.204281891168599e-2
allele num: 2242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.65725e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.57e-2

FS
type: SiteQuality
SIO_000300: 1.138e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

QD
type: SiteQuality
SIO_000300: 1.443e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

GenotypeQuality
all individuals: 12009
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25280
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.567308762943993e-5
allele num: 17962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10416
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

FS
type: SiteQuality
SIO_000300: 1.303e1

VQSLOD
type: SiteQuality
SIO_000300: -1.771e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.69e-2

MQ
type: SiteQuality
SIO_000300: 5.75e1

DP
type: SiteQuality
SIO_000300: 5.60882e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.513e0

QD
type: SiteQuality
SIO_000300: 1.537e1

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12372
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2259
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5002
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.898635477582846e-4
allele num: 10260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.830903790087464e-5
allele num: 17150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1994
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

VQSLOD
type: SiteQuality
SIO_000300: 3.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-2

DP
type: SiteQuality
SIO_000300: 5.54716e5

FS
type: SiteQuality
SIO_000300: 2.153e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.96e-1

QD
type: SiteQuality
SIO_000300: 1.087e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.85e-1

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3696
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1194
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 9.75e1
variant carriers: 41

GenotypeQuality
all individuals: 242
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24845
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 8.25e1
variant carriers: 1

African
type: Population
allele count: 29
allele frequency: 1.434223541048467e-2
allele num: 2022
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 1.20627261761158e-3
allele num: 3316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.915759583530525e-5
allele num: 16904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.52229e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.79e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

GenotypeQuality
all individuals: 4565
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 912
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.803921568627451e-5
allele num: 10200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.52229e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.276e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.79e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 4930
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.915759583530525e-5
allele num: 16904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.79e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.52229e5

QD
type: SiteQuality
SIO_000300: 1.276e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5069
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16676
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.076142131979696e-4
allele num: 1970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3244
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.861932938856015e-5
allele num: 10140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.149330587023687e-4
allele num: 1942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1022
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.50515e5

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

FS
type: SiteQuality
SIO_000300: 1.5105e1

VQSLOD
type: SiteQuality
SIO_000300: -1.719e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.307e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.141e0

GenotypeQuality
all individuals: 867
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 136
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26118
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16552
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.095975232198143e-4
allele num: 3230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.077e0

DP
type: SiteQuality
SIO_000300: 5.50319e5

VQSLOD
type: SiteQuality
SIO_000300: 9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.77e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 1.092e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26204
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3349
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 825
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3096
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 8.667388949079089e-3
allele num: 1846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

FS
type: SiteQuality
SIO_000300: 1.719e0

QD
type: SiteQuality
SIO_000300: 1.124e1

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

DP
type: SiteQuality
SIO_000300: 5.47992e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.81e-2

GenotypeQuality
all individuals: 1888
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 926
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.003009027081244e-4
allele num: 9970
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.913e1

QD
type: SiteQuality
SIO_000300: 6.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-2

DP
type: SiteQuality
SIO_000300: 5.4815e5

FS
type: SiteQuality
SIO_000300: 2.772e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.394e0

GenotypeQuality
all individuals: 3521
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27087
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.49e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 5.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 5.47953e5

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.299609424215698e-5
allele num: 15874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.18e0

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.49e-2

FS
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 5.47953e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3014
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.417118093174431e-4
allele num: 1846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.73e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

DP
type: SiteQuality
SIO_000300: 5.48197e5

VQSLOD
type: SiteQuality
SIO_000300: -2.474e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15534
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2924
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.415e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 5.4884e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.78e-2

QD
type: SiteQuality
SIO_000300: 8.51e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.530973451327434e-4
allele num: 1808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

DP
type: SiteQuality
SIO_000300: 5.49001e5

VQSLOD
type: SiteQuality
SIO_000300: -1.5e0

FS
type: SiteQuality
SIO_000300: 1.0366e1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.99e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 1983
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9668
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.083815028901734e-3
allele num: 2768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 37
allele frequency: 1.965993623804463e-2
allele num: 1882
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1796
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 5.48137e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.123e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.312163758037003e-4
allele num: 15242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1882
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.123e1

GenotypeQuality
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variant carriers: 101

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15204
num of homozygotes: 0

Latino
type: Population
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allele frequency: 3.303964757709251e-3
allele num: 2724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 97
allele frequency: 4.984583761562179e-2
allele num: 1946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 1.094e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 7.301208018053897e-4
allele num: 15066
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2690
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 5.489e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.639218791237794e-4
allele num: 15156
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 9624
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Other
type: Population
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allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.382131324004305e-4
allele num: 1858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1784
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.69e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.49701e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1776
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 1.323451561672843e-4
allele num: 15112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1860
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.945e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.78e-1

DP
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-2

QD
type: SiteQuality
SIO_000300: 3.816e1

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.061345786457228e-4
allele num: 9422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14628
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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BaseQRankSum
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FS
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SIO_000300: 8.616e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-2

ClippingRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1828
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.729475100942126e-5
allele num: 14860
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.729e0

DP
type: SiteQuality
SIO_000300: 5.54332e5

QD
type: SiteQuality
SIO_000300: 4.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.59e-2

FS
type: SiteQuality
SIO_000300: 8.138999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 6.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.64e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 2.808e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

DP
type: SiteQuality
SIO_000300: 5.51866e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.376e0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.273e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

DP
type: SiteQuality
SIO_000300: 5.48266e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.69e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 1
allele frequency: 1.400560224089636e-3
allele num: 714
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 14664
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.763e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 1.565e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 1.110864252388358e-4
allele num: 9002
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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MQ
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.2175e1

ReadPosRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 6.907985631389887e-5
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num of homozygotes: 0

African
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Latino
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South Asian
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East Asian
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European (Finnish)
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FS
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MQ
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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ReadPosRankSum
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BaseQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 5.716e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.49547e5

MQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.474e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.917e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 3.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.75e1
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GenotypeQuality
all individuals: 1576
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.819421713038734e-5
allele num: 14664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.47e-1

FS
type: SiteQuality
SIO_000300: 3.134e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 5.49219e5

GenotypeQuality
all individuals: 2510
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 201
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variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 1.312335958005249e-3
allele num: 2286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1676
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.087e0

FS
type: SiteQuality
SIO_000300: 4.741e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

QD
type: SiteQuality
SIO_000300: 7.45e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

DP
type: SiteQuality
SIO_000300: 5.12302e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30262
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 2.5e0
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 296
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3363
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.566585956416465e-5
allele num: 13216
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.95091e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.788e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.02e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.616e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.134e0

GenotypeQuality
all individuals: 76
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3603
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 16
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variant carriers: 7

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1551
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variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.616805170821791e-4
allele num: 2166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.555152614082804e-5
allele num: 13236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1778
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 2.534854245880862e-3
allele num: 1578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.02e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 4.94797e5

FS
type: SiteQuality
SIO_000300: 2.665e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.044e1

GenotypeQuality
all individuals: 254
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1042
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GenotypeQuality
all individuals: 201
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variant carriers: 0

GenotypeQuality
all individuals: 575
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variant carriers: 0

GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
all individuals: 1268
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variant carriers: 0

GenotypeQuality
all individuals: 1496
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variant carriers: 0

GenotypeQuality
all individuals: 2453
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 1

GenotypeQuality
all individuals: 265
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variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1448
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.500600240096038e-4
allele num: 6664
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.56276e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.759e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.23e-2

MQ
type: SiteQuality
SIO_000300: 5.799e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

GenotypeQuality
all individuals: 1651
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 211
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GenotypeQuality
all individuals: 2140
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.868393047179851e-5
allele num: 11276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.923e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

DP
type: SiteQuality
SIO_000300: 4.4075e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.55e-2

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 175
bin: 6.75e1
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GenotypeQuality
all individuals: 533
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GenotypeQuality
all individuals: 1139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 1

GenotypeQuality
all individuals: 169
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1556
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.314e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.47e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.282e0

DP
type: SiteQuality
SIO_000300: 4.43335e5

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 7.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3162
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 1959
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GenotypeQuality
all individuals: 1397
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.727712508638562e-4
allele num: 5788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

DP
type: SiteQuality
SIO_000300: 4.33329e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.646e0

QD
type: SiteQuality
SIO_000300: 5.97e0

GenotypeQuality
all individuals: 134
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16579
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 30453
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GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 140
bin: 4.75e1
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 993
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GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 1341
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
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GenotypeQuality
all individuals: 8
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 4.22528e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.57e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4860
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1392
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 3.462603878116343e-3
allele num: 1444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.381e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.79e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 4.15775e5

FS
type: SiteQuality
SIO_000300: 4.858e0

QD
type: SiteQuality
SIO_000300: 1.575e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4866
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 9.861932938856015e-5
allele num: 10140
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1398
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1280
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.693e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.71e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.227e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 4.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.16396e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.66e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1384
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.157962883038412e-4
allele num: 4634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.288e0

MQRankSum
type: SiteQuality
SIO_000300: -6.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.82e-2

DP
type: SiteQuality
SIO_000300: 4.0931e5

VQSLOD
type: SiteQuality
SIO_000300: -6.108e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 7.262917617763021e-4
allele num: 9638
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.374631268436578e-4
allele num: 1356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1226
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.572473708276177e-4
allele num: 4374
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.00342e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.256e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

QD
type: SiteQuality
SIO_000300: 1.121e1

MQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1200
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.284e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -4.24e-2

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1158
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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QD
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ReadPosRankSum
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BaseQRankSum
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FS
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 3

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Latino
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African
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allele frequency: 2.426343154246101e-2
allele num: 1154
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 3.79764e5

QD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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East Asian
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allele num: 1120
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South Asian
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MQ
type: SiteQuality
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DP
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BaseQRankSum
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FS
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QD
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Other
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allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.485707183693761e-4
allele num: 8046
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1090
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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FS
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BaseQRankSum
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SIO_000300: 3.77e-1

InbreedingCoeff
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SIO_000300: -4.71e-2

DP
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SIO_000300: 3.60697e5

MQRankSum
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SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQ
type: SiteQuality
SIO_000300: 5.787e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.627604166666667e-4
allele num: 6144
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

DP
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SIO_000300: 3.11404e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.92e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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QD
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SIO_000300: 6.84e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4966
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 4.587155963302753e-3
allele num: 654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 606
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1740
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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SIO_000300: 2.80192e5

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.59e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.545e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.748763056624519e-4
allele num: 3638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 472
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1240
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.766e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.35e-2

DP
type: SiteQuality
SIO_000300: 2.49242e5

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.411e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.34e-2

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.081e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 2.06694e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 24
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Latino
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allele frequency: 0.0e0
allele num: 154
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Other
type: Population
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

FS
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQRankSum
type: SiteQuality
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QD
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 1392
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African
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Other
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East Asian
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South Asian
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: NaN
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Latino
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allele frequency: NaN
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East Asian
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allele frequency: NaN
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European (Non-Finnish)
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allele frequency: NaN
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African
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allele frequency: NaN
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South Asian
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Other
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Other
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European (Finnish)
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allele frequency: NaN
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East Asian
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Latino
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allele frequency: NaN
allele num: 0
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South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.329e-1

DP
type: SiteQuality
SIO_000300: 2.365e3

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.627e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.032e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.876e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

DP
type: SiteQuality
SIO_000300: 3.488e3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3612
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11605
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4002
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2776
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.596627921829097e-5
allele num: 62632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5398
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.322e0

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 1.607779e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

QD
type: SiteQuality
SIO_000300: 4.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0