17-21205510-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205510
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205510
    reference: chr 17
allele count: 16
allele frequency: 1.321527686005022e-4
allele num: 121072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*439G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.368G>A
  hgvsp: ENSP00000319139.6:p.Arg123Gln
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.368G>A
  hgvsp: ENSP00000355081.5:p.Arg123Gln
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.455G>A
  hgvsp: ENSP00000345083.4:p.Arg152Gln
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.368G>A
  hgvsp: ENSP00000434068.2:p.Arg123Gln
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.455G>A
  hgvsp: ENSP00000464043.1:p.Arg152Gln
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7797
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8314
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3685
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg152Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

17-21205515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205515
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205515
    reference: chr 17
allele count: 1
allele frequency: 8.259138737012504e-6
allele num: 121078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.373G>A
  hgvsp: ENSP00000434068.2:p.Val125Met
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.373G>A
  hgvsp: ENSP00000319139.6:p.Val125Met
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.460G>A
  hgvsp: ENSP00000345083.4:p.Val154Met
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.460G>A
  hgvsp: ENSP00000464043.1:p.Val154Met
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.373G>A
  hgvsp: ENSP00000355081.5:p.Val125Met
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*444G>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17021
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6029
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val154Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

17-21205517-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205517
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205517
    reference: chr 17
allele count: 3
allele frequency: 2.478110028085247e-5
allele num: 121060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*446G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.462G>T
  hgvsp: ENST00000342679.4:c.462G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.375G>T
  hgvsp: ENST00000361818.5:c.375G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.375G>T
  hgvsp: ENST00000316920.6:c.375G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.375G>T
  hgvsp: ENST00000526076.2:c.375G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.462G>T
  hgvsp: ENST00000496046.1:c.462G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7797
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17018
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6028
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val154Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

17-21205521-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205521
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205521
    reference: chr 17
allele count: 2
allele frequency: 1.652073352056831e-5
allele num: 121060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*450G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.379G>T
  hgvsp: ENSP00000319139.6:p.Asp127Tyr
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.379G>T
  hgvsp: ENSP00000434068.2:p.Asp127Tyr
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.466G>T
  hgvsp: ENSP00000345083.4:p.Asp156Tyr
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.466G>T
  hgvsp: ENSP00000464043.1:p.Asp156Tyr
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.379G>T
  hgvsp: ENSP00000355081.5:p.Asp127Tyr
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7797
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp156Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-21205522-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205522
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205523
    reference: chr 17
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.381dupT
  hgvsp: ENSP00000319139.6:p.Lys128Ter
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.381dupT
  hgvsp: ENSP00000434068.2:p.Lys128Ter
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*452dupT
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.468dupT
  hgvsp: ENSP00000345083.4:p.Lys157Ter
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.468dupT
  hgvsp: ENSP00000464043.1:p.Lys157Ter
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.381dupT
  hgvsp: ENSP00000355081.5:p.Lys128Ter
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8396
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys157Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

17-21205528-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205528
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205528
    reference: chr 17
allele count: 2
allele frequency: 1.651827747402501e-5
allele num: 121078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.386A>G
  hgvsp: ENSP00000355081.5:p.Asn129Ser
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.386A>G
  hgvsp: ENSP00000319139.6:p.Asn129Ser
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*457A>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.386A>G
  hgvsp: ENSP00000434068.2:p.Asn129Ser
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.473A>G
  hgvsp: ENSP00000464043.1:p.Asn158Ser
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.473A>G
  hgvsp: ENSP00000345083.4:p.Asn158Ser
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8317
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn158Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

17-21205534-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205534
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205534
    reference: chr 17
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.392C>T
  hgvsp: ENSP00000434068.2:p.Thr131Ile
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.479C>T
  hgvsp: ENSP00000464043.1:p.Thr160Ile
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.392C>T
  hgvsp: ENSP00000355081.5:p.Thr131Ile
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.479C>T
  hgvsp: ENSP00000345083.4:p.Thr160Ile
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.392C>T
  hgvsp: ENSP00000319139.6:p.Thr131Ile
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*463C>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6632
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7795
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13541
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr160Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-21205540-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205540
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205540
    reference: chr 17
allele count: 1
allele frequency: 8.259957378619926e-6
allele num: 121066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.485C>T
  hgvsp: ENSP00000464043.1:p.Pro162Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.485C>T
  hgvsp: ENSP00000345083.4:p.Pro162Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.398C>T
  hgvsp: ENSP00000355081.5:p.Pro133Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.398C>T
  hgvsp: ENSP00000319139.6:p.Pro133Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.398C>T
  hgvsp: ENSP00000434068.2:p.Pro133Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*469C>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6013
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13519
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro162Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

17-21205550-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205550
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205550
    reference: chr 17
allele count: 2
allele frequency: 1.652127940787734e-5
allele num: 121056
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.495C>T
  hgvsp: ENST00000342679.4:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*479C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.495C>T
  hgvsp: ENST00000496046.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.408C>T
  hgvsp: ENST00000526076.2:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.408C>T
  hgvsp: ENST00000361818.5:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.408C>T
  hgvsp: ENST00000316920.6:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16998
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3652
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile165Ile
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

17-21205552-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205552
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205552
    reference: chr 17
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.497T>C
  hgvsp: ENSP00000345083.4:p.Leu166Pro
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*481T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.410T>C
  hgvsp: ENSP00000319139.6:p.Leu137Pro
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.497T>C
  hgvsp: ENSP00000464043.1:p.Leu166Pro
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.410T>C
  hgvsp: ENSP00000434068.2:p.Leu137Pro
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.410T>C
  hgvsp: ENSP00000355081.5:p.Leu137Pro
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6632
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8360
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5160
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu166Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP

17-21205553-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205553
    reference: chr 17
allele count: 100
allele frequency: 8.260912665631299e-4
allele num: 121052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.411T>C
  hgvsp: ENST00000526076.2:c.411T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.411T>C
  hgvsp: ENST00000316920.6:c.411T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.498T>C
  hgvsp: ENST00000496046.1:c.498T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.411T>C
  hgvsp: ENST00000361818.5:c.411T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.498T>C
  hgvsp: ENST00000342679.4:c.498T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*482T>C
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8311
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7800
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6001
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13381
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu166Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-21205561-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205561
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205561
    reference: chr 17
allele count: 260
allele frequency: 2.148618273172022e-3
allele num: 121008
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.506T>C
  hgvsp: ENSP00000345083.4:p.Ile169Thr
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.419T>C
  hgvsp: ENSP00000319139.6:p.Ile140Thr
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.419T>C
  hgvsp: ENSP00000355081.5:p.Ile140Thr
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.506T>C
  hgvsp: ENSP00000464043.1:p.Ile169Thr
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*490T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.419T>C
  hgvsp: ENSP00000434068.2:p.Ile140Thr
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7785
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 5.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 8323
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5997
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5158
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13301
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16869
  bin: 9.75e1
  variant carriers: 226
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Ile169Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

17-21205564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205564
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205564
    reference: chr 17
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.422C>T
  hgvsp: ENSP00000434068.2:p.Ala141Val
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*493C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.509C>T
  hgvsp: ENSP00000464043.1:p.Ala170Val
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.422C>T
  hgvsp: ENSP00000355081.5:p.Ala141Val
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.509C>T
  hgvsp: ENSP00000345083.4:p.Ala170Val
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.422C>T
  hgvsp: ENSP00000319139.6:p.Ala141Val
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala170Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

17-21205565-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205565
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205565
    reference: chr 17
allele count: 2
allele frequency: 1.652783287055401e-5
allele num: 121008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.423T>C
  hgvsp: ENST00000316920.6:c.423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.423T>C
  hgvsp: ENST00000361818.5:c.423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.423T>C
  hgvsp: ENST00000526076.2:c.423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*494T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.510T>C
  hgvsp: ENST00000496046.1:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.510T>C
  hgvsp: ENST00000342679.4:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16714
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6014
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala170Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum

17-21205568-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205568
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205568
    reference: chr 17
allele count: 7
allele frequency: 5.785123966942149e-5
allele num: 121000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.426G>C
  hgvsp: ENST00000526076.2:c.426G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.513G>C
  hgvsp: ENST00000496046.1:c.513G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.513G>C
  hgvsp: ENST00000342679.4:c.513G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*497G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.426G>C
  hgvsp: ENST00000361818.5:c.426G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.426G>C
  hgvsp: ENST00000316920.6:c.426G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8336
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13154
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3642
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16715
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val171Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

17-21205574-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205574
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205574
    reference: chr 17
allele count: 8
allele frequency: 6.613428566704694e-5
allele num: 120966
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+3G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+3G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+3G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+3G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+3G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+3G>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6649
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8295
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4021
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5166
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
hgvs: c.516+3G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-21205575-A-AGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205575
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205578
    reference: chr 17
allele count: 4
allele frequency: 3.307479865716317e-5
allele num: 120938
alternate allele: AGTG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+6_429+8dupTGG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+6_429+8dupTGG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+6_516+8dupTGG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+6_516+8dupTGG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+6_429+8dupTGG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+6_*500+8dupTGG
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7794
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4017
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16687
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.75e1
  variant carriers: 0
hgvs: c.516+6_516+8dupTGG
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

17-21205578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205578
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205578
    reference: chr 17
allele count: 2
allele frequency: 1.655327672112695e-5
allele num: 120822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+7G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+7G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+7G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+7G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+7G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+7G>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7772
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7781
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 2.25e1
  variant carriers: 0
hgvs: c.516+7G>A
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

17-21205579-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205579
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205579
    reference: chr 17
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+8G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+8G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+8G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+8G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+8G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+8G>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11536
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4013
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
hgvs: c.516+8G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

17-21205580-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205580
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205580
    reference: chr 17
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+9C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+9C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+9C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+9C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+9C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+9C>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11558
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-21205587-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205587
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205587
    reference: chr 17
allele count: 2
allele frequency: 1.668864004272292e-5
allele num: 119842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+16G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+16G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+16G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+16G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+16G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+16G>C
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6277
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3938
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16632
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5098
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

17-21205587-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205587
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205587
    reference: chr 17
allele count: 1
allele frequency: 8.34432002136146e-6
allele num: 119842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+16G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+16G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+16G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+16G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+16G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+16G>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3938
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16632
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2874
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/17-21205590-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205590
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205590
    reference: chr 17
allele count: 1
allele frequency: 8.380824673147837e-6
allele num: 119320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+19C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+19C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+19C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+19C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+19C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+19C>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3908
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

17-21205591-TGGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205591
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205588
    reference: chr 17
allele count: 1
allele frequency: 8.396869646995599e-6
allele num: 119092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+23_516+25delCGG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+23_429+25delCGG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+23_429+25delCGG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+23_429+25delCGG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+23_*500+25delCGG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+23_516+25delCGG
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4978
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3900
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16552
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4694
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: TGGC
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-21205592-GGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205592
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205590
    reference: chr 17
allele count: 60336
allele frequency: 4.999088604238819e-1
allele num: 120694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+23_516+24delCG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+23_429+24delCG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+23_429+24delCG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+23_516+24delCG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+23_*500+24delCG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+23_429+24delCG
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 6.25e1
  variant carriers: 5210
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 9.75e1
  variant carriers: 1639
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 7.25e1
  variant carriers: 2851
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 4.25e1
  variant carriers: 6940
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 4.75e1
  variant carriers: 7486
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 5.75e1
  variant carriers: 6198
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 570
genotype depth: GenotypeDepth
  all individuals: 7252
  bin: 5.25e1
  variant carriers: 7250
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 3.25e1
  variant carriers: 3941
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 2.75e1
  variant carriers: 2433
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.75e1
  variant carriers: 751
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 6.75e1
  variant carriers: 3907
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 361
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 2.25e1
  variant carriers: 1348
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 7.75e1
  variant carriers: 2047
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 8.25e1
  variant carriers: 1238
genotype depth: GenotypeDepth
  all individuals: 5334
  bin: 3.75e1
  variant carriers: 5330
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 8.75e1
  variant carriers: 846
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 16
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: GGC
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

17-21205593-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205593
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205592
    reference: chr 17
allele count: 6
allele frequency: 9.46073793755913e-4
allele num: 6342
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+23delC
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+23delC
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+23delC
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+23delC
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+23delC
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+23delC
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: GC
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

17-21205594-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205594
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205595
    reference: chr 17
allele count: 1
allele frequency: 2.005133140840552e-5
allele num: 49872
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+29dupG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+29dupG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+29dupG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+29dupG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+29dupG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+29dupG
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

17-21205594-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205594
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205594
    reference: chr 17
allele count: 3
allele frequency: 6.015399422521656e-5
allele num: 49872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+23C>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+23C>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+23C>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+23C>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+23C>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+23C>G
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14589
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

17-21205594-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205594
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205594
    reference: chr 17
allele count: 12
allele frequency: 2.406159769008662e-4
allele num: 49872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+23C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+23C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+23C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+23C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+23C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+23C>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14589
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

17-21205594-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205594
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205593
    reference: chr 17
allele count: 1
allele frequency: 2.005133140840552e-5
allele num: 49872
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+29delG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+29delG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+29delG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+29delG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+29delG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+29delG
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: CG
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD

17-21205596-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205596
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205596
    reference: chr 17
allele count: 1
allele frequency: 8.291048983517394e-6
allele num: 120612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+25G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+25G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+25G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+25G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+25G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+25G>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4547
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

17-21205597-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205597
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205597
    reference: chr 17
allele count: 1
allele frequency: 8.289399515899069e-6
allele num: 120636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+26G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+26G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+26G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+26G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+26G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+26G>C
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4683
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3943
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4089
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

17-21205600-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205600
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205599
    reference: chr 17
allele count: 1
allele frequency: 8.414391976035812e-6
allele num: 118844
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+30delT
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+30delT
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+30delT
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+30delT
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+30delT
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+30delT
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3747
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3773
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3945
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3526
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: GT
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-21205604-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205604
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205604
    reference: chr 17
allele count: 60230
allele frequency: 4.999004017130905e-1
allele num: 120484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+33T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+33T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+33T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+33T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+33T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+33T>C
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 7.25e1
  variant carriers: 1537
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 337
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 5.25e1
  variant carriers: 6545
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 1.75e1
  variant carriers: 1253
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 8.25e1
  variant carriers: 583
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 6.25e1
  variant carriers: 3586
genotype depth: GenotypeDepth
  all individuals: 7950
  bin: 4.75e1
  variant carriers: 7949
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 2.25e1
  variant carriers: 2169
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.25e1
  variant carriers: 639
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 3.75e1
  variant carriers: 7778
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 5.75e1
  variant carriers: 5043
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 3.25e1
  variant carriers: 5841
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 2.75e1
  variant carriers: 3975
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.75e1
  variant carriers: 922
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 6.75e1
  variant carriers: 2389
genotype depth: GenotypeDepth
  all individuals: 8557
  bin: 4.25e1
  variant carriers: 8557
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 9.75e1
  variant carriers: 892
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 241
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 60268
  bin: 9.75e1
  variant carriers: 60267
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 6.75e1
  variant carriers: 10
num of homozygotes: 1
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-21205606-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205606
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205606
    reference: chr 17
allele count: 23993
allele frequency: 2.006909127408994e-1
allele num: 119552
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+35G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+35G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+35G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+35G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+35G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+35G>C
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 2.25e1
  variant carriers: 957
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 6.75e1
  variant carriers: 674
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.25e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 5.75e1
  variant carriers: 1783
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 8015
  bin: 2.75e1
  variant carriers: 1846
genotype depth: GenotypeDepth
  all individuals: 10130
  bin: 3.25e1
  variant carriers: 2803
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 9.75e1
  variant carriers: 324
genotype depth: GenotypeDepth
  all individuals: 9376
  bin: 3.75e1
  variant carriers: 3449
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 1.75e1
  variant carriers: 499
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 4.75e1
  variant carriers: 3145
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 4.25e1
  variant carriers: 3650
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 6.25e1
  variant carriers: 1236
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.25e1
  variant carriers: 488
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 5.25e1
  variant carriers: 2417
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 31635
  bin: 9.75e1
  variant carriers: 22430
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 7.75e1
  variant carriers: 142
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.5e0
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.75e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 8.75e1
  variant carriers: 171
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 40
num of homozygotes: 1
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

17-21205609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205609
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205609
    reference: chr 17
allele count: 4
allele frequency: 3.333333333333333e-5
allele num: 120000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+38G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+38G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+38G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+38G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+38G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+38G>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5448
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4736
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

17-21205609-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205609
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205609
    reference: chr 17
allele count: 1
allele frequency: 8.333333333333334e-6
allele num: 120000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+38G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+38G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+38G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+38G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+38G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+38G>C
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5448
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-21205612-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21205612
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21205612
    reference: chr 17
allele count: 1
allele frequency: 8.337919188887221e-6
allele num: 119934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*500+41T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+41T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.516+41T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.429+41T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.429+41T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.429+41T>C
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14403
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-21206444-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206444
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206444
    reference: chr 17
allele count: 58994
allele frequency: 4.999915247054835e-1
allele num: 117990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+873A>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-51A>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-51A>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-51A>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-51A>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-51A>G
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 415
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 1.25e1
  variant carriers: 4743
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 591
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 7.5e0
  variant carriers: 1000
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 3.75e1
  variant carriers: 5201
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 1.75e1
  variant carriers: 9619
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 4.25e1
  variant carriers: 2889
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 4.75e1
  variant carriers: 1502
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 344
genotype depth: GenotypeDepth
  all individuals: 11320
  bin: 2.75e1
  variant carriers: 11303
genotype depth: GenotypeDepth
  all individuals: 11921
  bin: 2.25e1
  variant carriers: 11901
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 896
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 570
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 3.25e1
  variant carriers: 8256
genotype quality: GenotypeQuality
  all individuals: 57644
  bin: 9.75e1
  variant carriers: 57642
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.25e1
  variant carriers: 258
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.75e1
  variant carriers: 254
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.25e1
  variant carriers: 201
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 58
num of homozygotes: 25
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

17-21206444-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206444
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206444
    reference: chr 17
allele count: 5
allele frequency: 4.237647258242224e-5
allele num: 117990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+873A>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-51A>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-51A>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-51A>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-51A>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-51A>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11320
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

17-21206455-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206455
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206455
    reference: chr 17
allele count: 3
allele frequency: 2.521728897332011e-5
allele num: 118966
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-40C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-40C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-40C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-40C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+884C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-40C>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12114
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11988
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14927
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

17-21206457-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206457
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206457
    reference: chr 17
allele count: 3
allele frequency: 2.520076610328954e-5
allele num: 119044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-38G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-38G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-38G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-38G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-38G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+886G>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16810
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9505
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12005
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

17-21206461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206461
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206461
    reference: chr 17
allele count: 13
allele frequency: 1.090677226659507e-4
allele num: 119192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-34C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-34C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-34C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-34C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-34C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+890C>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17432
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12700
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9678
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-21206463-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206463
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206463
    reference: chr 17
allele count: 2
allele frequency: 1.677036341377518e-5
allele num: 119258
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-32T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+892T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-32T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-32T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-32T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-32T>C
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12843
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17872
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17562
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4906
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

17-21206464-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206464
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206464
    reference: chr 17
allele count: 19
allele frequency: 1.593478479653796e-4
allele num: 119236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-31G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+893G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-31G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-31G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-31G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-31G>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9857
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17973
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12923
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4926
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17607
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

17-21206465-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206465
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206465
    reference: chr 17
allele count: 1
allele frequency: 8.381105635455429e-6
allele num: 119316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-30T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+894T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-30T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-30T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-30T>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-30T>C
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17611
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12049
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

17-21206471-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206471
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206471
    reference: chr 17
allele count: 3
allele frequency: 2.509788173878125e-5
allele num: 119532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-24C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+900C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-24C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-24C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-24C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-24C>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18854
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18753
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12072
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-21206481-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206481
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206481
    reference: chr 17
allele count: 2
allele frequency: 1.6679454248257e-5
allele num: 119908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-14C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-14C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-14C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-14C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+910C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-14C>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13940
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12140
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

17-21206481-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206481
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206481
    reference: chr 17
allele count: 2
allele frequency: 1.6679454248257e-5
allele num: 119908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-14C>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-14C>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+910C>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-14C>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-14C>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-14C>G
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5181
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12140
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-21206483-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206483
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206483
    reference: chr 17
allele count: 3
allele frequency: 2.500333377783705e-5
allele num: 119984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-12C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-12C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-12C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-12C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+912C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-12C>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14076
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10567
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3631
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5219
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/17-21206485-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206485
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206485
    reference: chr 17
allele count: 1
allele frequency: 8.329723786359244e-6
allele num: 120052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+914C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-10C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-10C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-10C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-10C>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-10C>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4323
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12157
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

17-21206488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206488
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206488
    reference: chr 17
allele count: 1
allele frequency: 8.321682977165302e-6
allele num: 120168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-7C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-7C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-7C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+917C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-7C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-7C>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4355
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
hgvs: c.517-7C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

17-21206489-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206489
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206489
    reference: chr 17
allele count: 4
allele frequency: 3.328894806924101e-5
allele num: 120160
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-6C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-6C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-6C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+918C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-6C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-6C>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19123
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19760
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12165
  bin: 9.75e1
  variant carriers: 3
hgvs: c.517-6C>T
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

17-21206490-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206490
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206490
    reference: chr 17
allele count: 3
allele frequency: 2.496546444085682e-5
allele num: 120166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*501-5G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.430-5G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.430-5G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.517-5G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.430-5G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+919G>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10734
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
hgvs: c.517-5G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

17-21206498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206498
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206498
    reference: chr 17
allele count: 52
allele frequency: 4.318147846738968e-4
allele num: 120422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*504G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.433G>A
  hgvsp: ENSP00000319139.6:p.Val145Met
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.433G>A
  hgvsp: ENSP00000434068.2:p.Val145Met
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.520G>A
  hgvsp: ENSP00000345083.4:p.Val174Met
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.433G>A
  hgvsp: ENSP00000355081.5:p.Val145Met
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+927G>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 18995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14670
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12230
  bin: 9.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val174Met
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

17-21206498-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206498
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206498
    reference: chr 17
allele count: 10
allele frequency: 8.304130474498015e-5
allele num: 120422
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.433G>C
  hgvsp: ENSP00000355081.5:p.Val145Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.433G>C
  hgvsp: ENSP00000319139.6:p.Val145Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+927G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*504G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.520G>C
  hgvsp: ENSP00000345083.4:p.Val174Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.433G>C
  hgvsp: ENSP00000434068.2:p.Val145Leu
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18995
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12230
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 20027
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val174Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-21206501-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206501
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206501
    reference: chr 17
allele count: 2
allele frequency: 1.660936435962596e-5
allele num: 120414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.436C>T
  hgvsp: ENSP00000434068.2:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.436C>T
  hgvsp: ENSP00000355081.5:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*507C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.436C>T
  hgvsp: ENSP00000319139.6:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+930C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.523C>T
  hgvsp: ENSP00000345083.4:p.Arg175Trp
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10891
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18805
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3207
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12216
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg175Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-21206501-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206501
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206500
    reference: chr 17
allele count: 1
allele frequency: 8.304682179812978e-6
allele num: 120414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*510delG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.439delG
  hgvsp: ENSP00000434068.2:p.Ala147ProfsTer11
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.439delG
  hgvsp: ENSP00000355081.5:p.Ala147ProfsTer11
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.526delG
  hgvsp: ENSP00000345083.4:p.Ala176ProfsTer11
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+933delG
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.439delG
  hgvsp: ENSP00000319139.6:p.Ala147ProfsTer11
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12216
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala176ProfsTer11
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CG
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

17-21206502-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206502
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206502
    reference: chr 17
allele count: 2
allele frequency: 1.660329741486659e-5
allele num: 120458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.437G>A
  hgvsp: ENSP00000319139.6:p.Arg146Gln
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.437G>A
  hgvsp: ENSP00000434068.2:p.Arg146Gln
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*508G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+931G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.437G>A
  hgvsp: ENSP00000355081.5:p.Arg146Gln
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.524G>A
  hgvsp: ENSP00000345083.4:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg175Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

17-21206502-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206502
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206502
    reference: chr 17
allele count: 1
allele frequency: 8.301648707433296e-6
allele num: 120458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*508G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.437G>T
  hgvsp: ENSP00000319139.6:p.Arg146Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.437G>T
  hgvsp: ENSP00000434068.2:p.Arg146Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.524G>T
  hgvsp: ENSP00000345083.4:p.Arg175Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.437G>T
  hgvsp: ENSP00000355081.5:p.Arg146Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+931G>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18796
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20002
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12221
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg175Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

17-21206509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206509
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206509
    reference: chr 17
allele count: 2
allele frequency: 1.659172736473594e-5
allele num: 120542
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.531G>A
  hgvsp: ENST00000342679.4:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*515G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+938G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.444G>A
  hgvsp: ENST00000361818.5:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.444G>A
  hgvsp: ENST00000526076.2:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.444G>A
  hgvsp: ENST00000316920.6:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12227
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu177Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

17-21206510-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206510
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206510
    reference: chr 17
allele count: 1
allele frequency: 8.293799555452344e-6
allele num: 120572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+939G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.445G>A
  hgvsp: ENSP00000319139.6:p.Glu149Lys
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*516G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.445G>A
  hgvsp: ENSP00000434068.2:p.Glu149Lys
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.532G>A
  hgvsp: ENSP00000345083.4:p.Glu178Lys
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.445G>A
  hgvsp: ENSP00000355081.5:p.Glu149Lys
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20238
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu178Lys
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

17-21206515-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206515
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206515
    reference: chr 17
allele count: 1
allele frequency: 8.292011476143882e-6
allele num: 120598
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.537T>A
  hgvsp: ENSP00000345083.4:p.His179Gln
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*521T>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.450T>A
  hgvsp: ENSP00000434068.2:p.His150Gln
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+944T>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.450T>A
  hgvsp: ENSP00000355081.5:p.His150Gln
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.450T>A
  hgvsp: ENSP00000319139.6:p.His150Gln
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3769
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 1
hgvs: p.His179Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

17-21206518-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206518
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206518
    reference: chr 17
allele count: 2
allele frequency: 1.658567329540743e-5
allele num: 120586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*524G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.453G>T
  hgvsp: ENST00000316920.6:c.453G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.453G>T
  hgvsp: ENST00000361818.5:c.453G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.453G>T
  hgvsp: ENST00000526076.2:c.453G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+947G>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.540G>T
  hgvsp: ENST00000342679.4:c.540G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12232
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu180Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

17-21206527-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206527
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206527
    reference: chr 17
allele count: 1
allele frequency: 8.292561572269675e-6
allele num: 120590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.462G>A
  hgvsp: ENST00000361818.5:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*533G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.462G>A
  hgvsp: ENST00000526076.2:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.549G>A
  hgvsp: ENST00000342679.4:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.462G>A
  hgvsp: ENST00000316920.6:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+956G>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4415
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7271
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys183Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-21206532-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206532
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206532
    reference: chr 17
allele count: 7
allele frequency: 5.805370797326212e-5
allele num: 120578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+961C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*538C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.554C>T
  hgvsp: ENSP00000345083.4:p.Ser185Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.467C>T
  hgvsp: ENSP00000434068.2:p.Ser156Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.467C>T
  hgvsp: ENSP00000355081.5:p.Ser156Leu
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.467C>T
  hgvsp: ENSP00000319139.6:p.Ser156Leu
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4410
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser185Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-21206533-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206533
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206533
    reference: chr 17
allele count: 11
allele frequency: 9.123330845152193e-5
allele num: 120570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.468G>A
  hgvsp: ENST00000526076.2:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*539G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.555G>A
  hgvsp: ENST00000342679.4:c.555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+962G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.468G>A
  hgvsp: ENST00000316920.6:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.468G>A
  hgvsp: ENST00000361818.5:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17593
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12262
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser185Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

17-21206536-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206536
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206536
    reference: chr 17
allele count: 23
allele frequency: 1.907225898469244e-4
allele num: 120594
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.471G>C
  hgvsp: ENST00000316920.6:c.471G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.471G>C
  hgvsp: ENST00000361818.5:c.471G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.471G>C
  hgvsp: ENST00000526076.2:c.471G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.558G>C
  hgvsp: ENST00000342679.4:c.558G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+965G>C
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*542G>C
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10989
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15066
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17331
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12275
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 18757
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val186Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

17-21206539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206539
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206539
    reference: chr 17
allele count: 2
allele frequency: 1.658677370664632e-5
allele num: 120578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.474C>T
  hgvsp: ENST00000316920.6:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.561C>T
  hgvsp: ENST00000342679.4:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+968C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*545C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000434068
  ensembl transcript: ENST00000526076
  gene symbol: MAP2K3
  hgvsc: ENST00000526076.2:c.474C>T
  hgvsp: ENST00000526076.2:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.474C>T
  hgvsp: ENST00000361818.5:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14967
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4430
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7183
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile187Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

17-21206547-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206547
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206547
    reference: chr 17
allele count: 1
allele frequency: 8.297653423611802e-6
allele num: 120516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.481+1G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*552+1G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.481+1G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.568+1G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+976G>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16582
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5375
  bin: 7.75e1
  variant carriers: 0
hgvs: c.568+1G>A
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

17-21206556-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206556
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206556
    reference: chr 17
allele count: 63004
allele frequency: 5.249108541340354e-1
allele num: 120028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*552+10C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+985C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.481+10C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.481+10C>T
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.568+10C>T
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 5991
  bin: 4.75e1
  variant carriers: 5991
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 2.75e1
  variant carriers: 5222
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 9.75e1
  variant carriers: 2275
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 2.25e1
  variant carriers: 3678
genotype depth: GenotypeDepth
  all individuals: 6954
  bin: 4.25e1
  variant carriers: 6954
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 3.25e1
  variant carriers: 6568
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 621
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 966
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 3.75e1
  variant carriers: 7033
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 1.75e1
  variant carriers: 2193
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 5.75e1
  variant carriers: 3944
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 5.25e1
  variant carriers: 5070
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 6.25e1
  variant carriers: 2981
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 8.75e1
  variant carriers: 787
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 7.25e1
  variant carriers: 1664
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 2200
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.75e1
  variant carriers: 1286
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 8.25e1
  variant carriers: 930
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 146
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.25e1
  variant carriers: 214
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 158
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 6.25e1
  variant carriers: 252
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.75e1
  variant carriers: 336
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.25e1
  variant carriers: 279
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.75e1
  variant carriers: 219
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.75e1
  variant carriers: 181
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 138
num of homozygotes: 2993
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-21206557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206557
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206557
    reference: chr 17
allele count: 1
allele frequency: 8.351149118118652e-6
allele num: 119744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+986G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.481+11G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*552+11G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.568+11G>A
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.481+11G>A
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-21206568-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21206568
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 21206568
    reference: chr 17
allele count: 386
allele frequency: 3.238689757014364e-3
allele num: 119184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000464043
  ensembl transcript: ENST00000496046
  gene symbol: MAP2K3
  hgvsc: ENST00000496046.1:c.516+997A>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000345083
  ensembl transcript: ENST00000342679
  gene symbol: MAP2K3
  hgvsc: ENST00000342679.4:c.568+22A>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000319139
  ensembl transcript: ENST00000316920
  gene symbol: MAP2K3
  hgvsc: ENST00000316920.6:c.481+22A>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000355081
  ensembl transcript: ENST00000361818
  gene symbol: MAP2K3
  hgvsc: ENST00000361818.5:c.481+22A>G
  variant of: http://identifiers.org/hgnc/6843
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000034152
  ensembl protein: ENSP00000378869
  ensembl transcript: ENST00000395491
  gene symbol: MAP2K3
  hgvsc: ENST00000395491.2:c.*552+22A>G
  variant of: http://identifiers.org/hgnc/6843
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17341
  bin: 2.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 3.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11483
  bin: 3.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 4.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 7763
  bin: 6.75e1
  variant carriers: 6
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4028
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6028
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2333
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17037
bin: 9.75e1
variant carriers: 15

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926782273603083e-4
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.353912808015164e-4
allele num: 66474
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.471418653089562e-4
allele num: 8642
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.017e0

QD
type: SiteQuality
SIO_000300: 4.04e0

MQ
type: SiteQuality
SIO_000300: 5.744e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

FS
type: SiteQuality
SIO_000300: 1.348e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 3.259526e6

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2339
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504257047444267e-5
allele num: 66478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.052e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

DP
type: SiteQuality
SIO_000300: 3.259318e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 2.96e0

MQ
type: SiteQuality
SIO_000300: 5.733e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 7.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.4e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.489e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

QD
type: SiteQuality
SIO_000300: 3.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.808e1

FS
type: SiteQuality
SIO_000300: 1.496e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

DP
type: SiteQuality
SIO_000300: 3.259437e6

BaseQRankSum
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SIO_000300: -3.275e0

MQRankSum
type: SiteQuality
SIO_000300: -3.89e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

African
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allele frequency: 1.927153594141453e-4
allele num: 10378
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.779e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

FS
type: SiteQuality
SIO_000300: 5.474e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.739e0

DP
type: SiteQuality
SIO_000300: 3.259306e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.259e0

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504438092372499e-5
allele num: 66470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

VQSLOD
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SIO_000300: -2.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.0628e1

MQ
type: SiteQuality
SIO_000300: 5.878e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008514094888535e-5
allele num: 66478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.557e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.259183e6

MQRankSum
type: SiteQuality
SIO_000300: 2.54e0

QD
type: SiteQuality
SIO_000300: 6.21e0

FS
type: SiteQuality
SIO_000300: 4.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-1

MQ
type: SiteQuality
SIO_000300: 5.864e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504347564461293e-5
allele num: 66474
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.143000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.516e1

VQSLOD
type: SiteQuality
SIO_000300: -1.889e0

MQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.68e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 2.314279102059708e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66458
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South Asian
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allele num: 16510
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Latino
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.797e0

VQSLOD
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InbreedingCoeff
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QD
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FS
type: SiteQuality
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele num: 8642
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Other
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ClippingRankSum
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SIO_000300: -2.401e0

ReadPosRankSum
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 98

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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Other
type: Population
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European (Non-Finnish)
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allele count: 1
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allele num: 66460
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East Asian
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South Asian
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allele frequency: 5.997092318875697e-3
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DP
type: SiteQuality
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 204
allele frequency: 3.071549024331486e-3
allele num: 66416
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African
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allele frequency: 2.89073039121218e-4
allele num: 10378
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Other
type: Population
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allele num: 906
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European (Finnish)
type: Population
allele count: 45
allele frequency: 6.818181818181818e-3
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.057459328487366e-4
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.758e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

QD
type: SiteQuality
SIO_000300: 3.05e0

DP
type: SiteQuality
SIO_000300: 3.256397e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

FS
type: SiteQuality
SIO_000300: 1.459e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.243e0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16717
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.25064e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.003e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.784e1

VQSLOD
type: SiteQuality
SIO_000300: -2.292e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 4020
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13253
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variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.314279102059708e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.572e0

MQRankSum
type: SiteQuality
SIO_000300: -6.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 9.09e-1

MQ
type: SiteQuality
SIO_000300: 5.666e1

QD
type: SiteQuality
SIO_000300: 2.42e0

DP
type: SiteQuality
SIO_000300: 3.250484e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.04e-1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 4022
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5177
bin: 8.25e1
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GenotypeQuality
all individuals: 2327
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8342
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.034783918084625e-5
allele num: 66410
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.249444e6

QD
type: SiteQuality
SIO_000300: 3.48e0

MQ
type: SiteQuality
SIO_000300: 5.808e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

FS
type: SiteQuality
SIO_000300: 2.682e0

MQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.723e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.62e-1

GenotypeQuality
all individuals: 348
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12602
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3630
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5993
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variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16701
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.719027402547279e-4
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.888e0

FS
type: SiteQuality
SIO_000300: 7.39e-1

DP
type: SiteQuality
SIO_000300: 3.245569e6

MQ
type: SiteQuality
SIO_000300: 5.703e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.72e-1

QD
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.894e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5988
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8274
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3618
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 2320
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5165
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.520386945122503e-5
allele num: 66366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.637e1

QD
type: SiteQuality
SIO_000300: 7.92e0

FS
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-2

DP
type: SiteQuality
SIO_000300: 3.245298e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

GenotypeQuality
all individuals: 811
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4016
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variant carriers: 0

GenotypeQuality
all individuals: 16681
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variant carriers: 1

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 3484
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GenotypeQuality
all individuals: 598
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variant carriers: 0

GenotypeQuality
all individuals: 5882
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variant carriers: 0

GenotypeQuality
all individuals: 5121
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731601731601732e-4
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66288
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.234036e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

MQ
type: SiteQuality
SIO_000300: 5.837e1

FS
type: SiteQuality
SIO_000300: 1.532e0

VQSLOD
type: SiteQuality
SIO_000300: -1.508e0

QD
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.747e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 240
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GenotypeQuality
all individuals: 2315
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.259e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

MQ
type: SiteQuality
SIO_000300: 5.844e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.63e-1

QD
type: SiteQuality
SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: -3.548e0

DP
type: SiteQuality
SIO_000300: 3.233671e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4010
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 853
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.32e-1

QD
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: -2.862e0

DP
type: SiteQuality
SIO_000300: 3.233202e6

MQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.813e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2263
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GenotypeQuality
all individuals: 1213
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.966955153422502e-4
allele num: 10168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.55e-1

MQ
type: SiteQuality
SIO_000300: 5.682e1

VQSLOD
type: SiteQuality
SIO_000300: -1.625e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

DP
type: SiteQuality
SIO_000300: 3.1943e6

FS
type: SiteQuality
SIO_000300: 2.653e0

QD
type: SiteQuality
SIO_000300: 2.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2824
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5499
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GenotypeQuality
all individuals: 5098
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519895431194334e-5
allele num: 65794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.682e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

FS
type: SiteQuality
SIO_000300: 2.653e0

VQSLOD
type: SiteQuality
SIO_000300: -1.625e0

DP
type: SiteQuality
SIO_000300: 3.1943e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQRankSum
type: SiteQuality
SIO_000300: -3.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

QD
type: SiteQuality
SIO_000300: 2.15e0

GenotypeQuality
all individuals: 2250
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16591
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5007
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4703
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2719
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527137228551358e-5
allele num: 65482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.192544e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

MQ
type: SiteQuality
SIO_000300: 5.725e1

VQSLOD
type: SiteQuality
SIO_000300: -1.849e0

QD
type: SiteQuality
SIO_000300: 3.9e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.04e-1

GenotypeQuality
all individuals: 1320
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2893
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5671
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528911720637251e-5
allele num: 65406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.662e1

QD
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 1.257e0

DP
type: SiteQuality
SIO_000300: 3.193749e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.985e0

VQSLOD
type: SiteQuality
SIO_000300: -7.115e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

GenotypeQuality
all individuals: 140
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 60285
bin: 9.75e1
variant carriers: 60285

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 30

GenotypeQuality
all individuals: 26
bin: 8.75e1
variant carriers: 26

GenotypeQuality
all individuals: 10
bin: 6.75e1
variant carriers: 10

European (Finnish)
type: Population
allele count: 3285
allele frequency: 5.0e-1
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 450
allele frequency: 5.0e-1
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 5166
allele frequency: 4.997098084735926e-1
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33107
allele frequency: 4.999244986711766e-1
allele num: 66224
num of homozygotes: 0

South Asian
type: Population
allele count: 8246
allele frequency: 4.998787584869059e-1
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 5771
allele frequency: 5.0e-1
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 4311
allele frequency: 4.998840445269017e-1
allele num: 8624
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.31e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

DP
type: SiteQuality
SIO_000300: 3.183181e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.911e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.122e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.521e0

MQ
type: SiteQuality
SIO_000300: 5.66e1

GenotypeQuality
all individuals: 210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.440092165898618e-3
allele num: 3472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.1441647597254e-3
allele num: 874
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 1.71178e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQ
type: SiteQuality
SIO_000300: 5.563e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

GenotypeQuality
all individuals: 1399
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14589
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.65123411713159e-5
allele num: 27388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6820
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.4e0

MQ
type: SiteQuality
SIO_000300: 5.797e1

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

DP
type: SiteQuality
SIO_000300: 1.3173e6

GenotypeQuality
all individuals: 1326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1399
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3578
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.681647940074906e-4
allele num: 4272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.65123411713159e-5
allele num: 27388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6820
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.11e-2

MQ
type: SiteQuality
SIO_000300: 5.797e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

DP
type: SiteQuality
SIO_000300: 1.3173e6

QD
type: SiteQuality
SIO_000300: 4.4e0

GenotypeQuality
all individuals: 141
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2680
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.340823970037453e-4
allele num: 4272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 3.286110705418431e-4
allele num: 27388
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.097315436241611e-4
allele num: 4768
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.466275659824047e-4
allele num: 6820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

MQ
type: SiteQuality
SIO_000300: 5.797e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

DP
type: SiteQuality
SIO_000300: 1.3173e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.11e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 4.4e0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14589
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2680
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.097315436241611e-4
allele num: 4768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.797e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 1.3173e6

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.4e0

GenotypeQuality
all individuals: 355
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30031
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 497
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2934
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511076188461422e-5
allele num: 66178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.847e0

VQSLOD
type: SiteQuality
SIO_000300: -1.642e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

MQ
type: SiteQuality
SIO_000300: 5.701e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.54e-1

DP
type: SiteQuality
SIO_000300: 2.759331e6

QD
type: SiteQuality
SIO_000300: 3.06e0

GenotypeQuality
all individuals: 365
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2798
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4035
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30032
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.874e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.655e1

FS
type: SiteQuality
SIO_000300: 5.703e0

DP
type: SiteQuality
SIO_000300: 2.758685e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.452e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

QD
type: SiteQuality
SIO_000300: 2.84e0

GenotypeQuality
all individuals: 474
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29177
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 235
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533460099368214e-5
allele num: 65212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.857e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.38e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.345e0

FS
type: SiteQuality
SIO_000300: 3.553e0

QD
type: SiteQuality
SIO_000300: 6.14e0

DP
type: SiteQuality
SIO_000300: 2.746131e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 15
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 148
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 30

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 11

South Asian
type: Population
allele count: 8245
allele frequency: 4.998181377303589e-1
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 5763
allele frequency: 5.0e-1
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 5143
allele frequency: 4.997085114652157e-1
allele num: 10292
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 33049
allele frequency: 4.999546169672032e-1
allele num: 66104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3273
allele frequency: 4.998472816127062e-1
allele num: 6548
num of homozygotes: 0

East Asian
type: Population
allele count: 4310
allele frequency: 4.997680890538033e-1
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 447
allele frequency: 5.0e-1
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.715000000000001e1

FS
type: SiteQuality
SIO_000300: 7.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.905e-1

DP
type: SiteQuality
SIO_000300: 2.793253e6

MQ
type: SiteQuality
SIO_000300: 5.55e1

MQRankSum
type: SiteQuality
SIO_000300: -1.905e0

QD
type: SiteQuality
SIO_000300: 1.5e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

GenotypeQuality
all individuals: 536
bin: 3.75e1
variant carriers: 66

GenotypeQuality
all individuals: 7938
bin: 6.25e1
variant carriers: 118

GenotypeQuality
all individuals: 2211
bin: 7.25e1
variant carriers: 148

GenotypeQuality
all individuals: 631
bin: 3.25e1
variant carriers: 52

GenotypeQuality
all individuals: 2429
bin: 9.25e1
variant carriers: 138

GenotypeQuality
all individuals: 2985
bin: 8.25e1
variant carriers: 158

GenotypeQuality
all individuals: 238
bin: 5.75e1
variant carriers: 102

GenotypeQuality
all individuals: 4312
bin: 6.75e1
variant carriers: 127

African
type: Population
allele count: 2409
allele frequency: 2.37199684915321e-1
allele num: 10156
num of homozygotes: 0

South Asian
type: Population
allele count: 4098
allele frequency: 2.492094380929214e-1
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1203
allele frequency: 1.869754429592788e-1
allele num: 6434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11972
allele frequency: 1.82377673511669e-1
allele num: 65644
num of homozygotes: 1

Latino
type: Population
allele count: 2477
allele frequency: 2.168242296918768e-1
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 1674
allele frequency: 1.952869808679421e-1
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 160
allele frequency: 1.822323462414579e-1
allele num: 878
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.668e0

DP
type: SiteQuality
SIO_000300: 2.416594e6

QD
type: SiteQuality
SIO_000300: 7.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.454e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.248e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-2

MQ
type: SiteQuality
SIO_000300: 5.552e1

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14428
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517865274278255e-5
allele num: 65882
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.320724065908564e-4
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.813542688910697e-5
allele num: 10190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.962e0

FS
type: SiteQuality
SIO_000300: 6.76e-1

MQ
type: SiteQuality
SIO_000300: 5.642e1

VQSLOD
type: SiteQuality
SIO_000300: -1.514e0

DP
type: SiteQuality
SIO_000300: 2.197787e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

GenotypeQuality
all individuals: 3382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4736
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.197787e6

VQSLOD
type: SiteQuality
SIO_000300: -1.514e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.962e0

QD
type: SiteQuality
SIO_000300: 5.7e0

MQ
type: SiteQuality
SIO_000300: 5.642e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 6.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

GenotypeQuality
all individuals: 5395
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3774
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4699
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7160
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518418415378542e-5
allele num: 65858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.16e0

FS
type: SiteQuality
SIO_000300: 1.859e0

VQSLOD
type: SiteQuality
SIO_000300: -1.303e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.668e1

DP
type: SiteQuality
SIO_000300: 2.188184e6

GenotypeQuality
all individuals: 561
bin: 2.5e0
variant carriers: 25

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 58

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 142

GenotypeQuality
all individuals: 123
bin: 6.25e1
variant carriers: 121

GenotypeQuality
all individuals: 254
bin: 9.25e1
variant carriers: 254

GenotypeQuality
all individuals: 277
bin: 8.75e1
variant carriers: 277

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 115

GenotypeQuality
all individuals: 151
bin: 6.75e1
variant carriers: 151

South Asian
type: Population
allele count: 7985
allele frequency: 5.001879228263593e-1
allele num: 15964
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 32508
allele frequency: 5.000769159769868e-1
allele num: 65006
num of homozygotes: 16

European (Finnish)
type: Population
allele count: 3179
allele frequency: 4.996856334486011e-1
allele num: 6362
num of homozygotes: 2

African
type: Population
allele count: 5000
allele frequency: 4.996003197442047e-1
allele num: 10008
num of homozygotes: 3

East Asian
type: Population
allele count: 4224
allele frequency: 5.001183992422449e-1
allele num: 8446
num of homozygotes: 1

Other
type: Population
allele count: 436
allele frequency: 5.0e-1
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 5662
allele frequency: 4.996470172961525e-1
allele num: 11332
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.713817e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.726e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

FS
type: SiteQuality
SIO_000300: 7.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.389e1

MQ
type: SiteQuality
SIO_000300: 5.833e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0338e2

GenotypeQuality
all individuals: 561
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57644
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15964
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.996003197442046e-4
allele num: 10008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.713817e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: 1.0338e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.726e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQ
type: SiteQuality
SIO_000300: 5.833e1

FS
type: SiteQuality
SIO_000300: 7.26e-1

QD
type: SiteQuality
SIO_000300: 1.389e1

GenotypeQuality
all individuals: 4681
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3953
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6110
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3019
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.858966414673442e-4
allele num: 16138
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 5.884e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.454e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.336e0

QD
type: SiteQuality
SIO_000300: 2.97e0

DP
type: SiteQuality
SIO_000300: 1.744597e6

GenotypeQuality
all individuals: 3994
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16024
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6192
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.630655910206945e-4
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

MQ
type: SiteQuality
SIO_000300: 5.801e1

DP
type: SiteQuality
SIO_000300: 1.754299e6

FS
type: SiteQuality
SIO_000300: 7.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.244e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.279e0

QD
type: SiteQuality
SIO_000300: 5.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12021
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1572
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4070
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.520823584464202e-3
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65582
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.809e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 4.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.37e0

DP
type: SiteQuality
SIO_000300: 1.767988e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12031
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
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variant carriers: 0

GenotypeQuality
all individuals: 2150
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.178178672927221e-5
allele num: 16186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.846396218983852e-5
allele num: 10156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.847e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.775947e6

QD
type: SiteQuality
SIO_000300: 2.51e0

GenotypeQuality
all individuals: 3097
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 17

GenotypeQuality
all individuals: 250
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.755034144633164e-5
allele num: 11422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.550868486352357e-4
allele num: 6448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.591858515017533e-4
allele num: 65590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.85e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.396e0

VQSLOD
type: SiteQuality
SIO_000300: -1.854e0

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e-1

DP
type: SiteQuality
SIO_000300: 1.779425e6

QD
type: SiteQuality
SIO_000300: 4.79e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4131
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523507724184162e-5
allele num: 65638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.777e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.781805e6

VQSLOD
type: SiteQuality
SIO_000300: -9.415e-1

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

GenotypeQuality
all individuals: 359
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 2.5e0
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GenotypeQuality
all individuals: 4176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6700
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variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.847973389183196e-4
allele num: 16234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65768
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.697e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.932e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 5.831e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.002e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.56e-1

QD
type: SiteQuality
SIO_000300: 2.46e0

DP
type: SiteQuality
SIO_000300: 1.799481e6

GenotypeQuality
all individuals: 241
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6982
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variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5181
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3190
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.226391954868776e-4
allele num: 16308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65944
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 1.820945e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 7.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.883e0

VQSLOD
type: SiteQuality
SIO_000300: -1.069e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 2.15e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

GenotypeQuality
all individuals: 200
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6982
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.084515731030228e-4
allele num: 6484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.15e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

FS
type: SiteQuality
SIO_000300: 7.19e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.883e0

DP
type: SiteQuality
SIO_000300: 1.820945e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.069e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
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GenotypeQuality
all individuals: 2244
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743679163034002e-4
allele num: 11470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515472979116782e-5
allele num: 65986
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.28e-1

DP
type: SiteQuality
SIO_000300: 1.825531e6

FS
type: SiteQuality
SIO_000300: 1.822e0

VQSLOD
type: SiteQuality
SIO_000300: -3.943e0

QD
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19758
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variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.122199093914534e-5
allele num: 16334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 1.828927e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.92e0

FS
type: SiteQuality
SIO_000300: 1.235e0

VQSLOD
type: SiteQuality
SIO_000300: -2.407e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12160
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.706251088281386e-5
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.805e0

FS
type: SiteQuality
SIO_000300: 1.449e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

VQSLOD
type: SiteQuality
SIO_000300: -2.796e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

DP
type: SiteQuality
SIO_000300: 1.832072e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 2.95e0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
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GenotypeQuality
all individuals: 5283
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GenotypeQuality
all individuals: 269
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GenotypeQuality
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GenotypeQuality
all individuals: 227
bin: 4.75e1
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GenotypeQuality
all individuals: 7132
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GenotypeQuality
all individuals: 4350
bin: 8.25e1
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GenotypeQuality
all individuals: 2259
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.540501271340356e-5
allele num: 66072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.108735491753207e-5
allele num: 16370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.861e0

FS
type: SiteQuality
SIO_000300: 9.741e0

QD
type: SiteQuality
SIO_000300: 3.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.95e-1

MQ
type: SiteQuality
SIO_000300: 5.833e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.94e-1

DP
type: SiteQuality
SIO_000300: 1.833746e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12171
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19508
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.53953938807009e-5
allele num: 66086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.264e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

QD
type: SiteQuality
SIO_000300: 2.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.835571e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20027
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GenotypeQuality
all individuals: 2276
bin: 8.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

South Asian
type: Population
allele count: 49
allele frequency: 2.984892787524366e-3
allele num: 16416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020418025854778e-5
allele num: 66216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.453e0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

FS
type: SiteQuality
SIO_000300: 1.441e0

QD
type: SiteQuality
SIO_000300: 3.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.792e1

DP
type: SiteQuality
SIO_000300: 1.843651e6

GenotypeQuality
all individuals: 292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.482456140350877e-4
allele num: 16416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510209012927389e-5
allele num: 66216
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.792e1

FS
type: SiteQuality
SIO_000300: 1.441e0

DP
type: SiteQuality
SIO_000300: 1.843651e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: -1.453e0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

QD
type: SiteQuality
SIO_000300: 3.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
all individuals: 770
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4392
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variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510710940568632e-5
allele num: 66194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.088650754992694e-5
allele num: 16424
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.771e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

DP
type: SiteQuality
SIO_000300: 1.846314e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

QD
type: SiteQuality
SIO_000300: 2.12e0

GenotypeQuality
all individuals: 259
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 236
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GenotypeQuality
all individuals: 5313
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 212
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variant carriers: 0

GenotypeQuality
all individuals: 4392
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510710940568632e-5
allele num: 66194
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.771e1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 1.846314e6

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
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GenotypeQuality
all individuals: 20002
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7267
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GenotypeQuality
all individuals: 3751
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020418025854778e-5
allele num: 66216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.844e1

VQSLOD
type: SiteQuality
SIO_000300: -2.845e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

QD
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

FS
type: SiteQuality
SIO_000300: 4.34e0

DP
type: SiteQuality
SIO_000300: 1.846635e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 227
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GenotypeQuality
all individuals: 3751
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510209012927389e-5
allele num: 66216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.845e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

DP
type: SiteQuality
SIO_000300: 1.846635e6

MQ
type: SiteQuality
SIO_000300: 5.844e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 4.34e0

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

QD
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509433962264151e-5
allele num: 66250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.842e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.849589e6

MQ
type: SiteQuality
SIO_000300: 5.871e1

QD
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.632e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.98e0

DP
type: SiteQuality
SIO_000300: 1.849933e6

MQ
type: SiteQuality
SIO_000300: 5.596e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 88
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5389
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GenotypeQuality
all individuals: 185
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508568670045861e-5
allele num: 66288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.849692e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: -3.585e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5388
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4415
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216101179618144e-4
allele num: 16446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.426e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

FS
type: SiteQuality
SIO_000300: 8.070000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.652e0

DP
type: SiteQuality
SIO_000300: 1.849243e6

MQ
type: SiteQuality
SIO_000300: 5.626e1

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19447
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3221
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12239
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.847664e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.05e-1

MQ
type: SiteQuality
SIO_000300: 5.787e1

VQSLOD
type: SiteQuality
SIO_000300: -2.686e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.19e-1

QD
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e0

GenotypeQuality
all individuals: 385
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12252
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19050
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.82977069568597e-4
allele num: 10292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.286e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQ
type: SiteQuality
SIO_000300: 5.805e1

DP
type: SiteQuality
SIO_000300: 1.846976e6

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.284e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19185
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5369
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2283
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.648303538854433e-4
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737619461337967e-4
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017774692941425e-5
allele num: 66274
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.372e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.93e-1

MQ
type: SiteQuality
SIO_000300: 5.85e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

DP
type: SiteQuality
SIO_000300: 1.848018e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.435e0

QD
type: SiteQuality
SIO_000300: 2.75e0

GenotypeQuality
all individuals: 588
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7236
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3752
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3226
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508477644361311e-5
allele num: 66292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.136752136752137e-3
allele num: 10296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.323e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.265e0

DP
type: SiteQuality
SIO_000300: 1.846174e6

MQ
type: SiteQuality
SIO_000300: 5.805e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.72e-1

QD
type: SiteQuality
SIO_000300: 4.81e0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5382
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12264
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017319413433106e-5
allele num: 66284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.927e0

DP
type: SiteQuality
SIO_000300: 1.844486e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

MQ
type: SiteQuality
SIO_000300: 5.745e1

FS
type: SiteQuality
SIO_000300: 1.0576e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.523e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 3.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

GenotypeQuality
all individuals: 466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12268
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509661835748792e-5
allele num: 66240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: -2.254e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-2

FS
type: SiteQuality
SIO_000300: 3.054e0

MQ
type: SiteQuality
SIO_000300: 5.742e1

DP
type: SiteQuality
SIO_000300: 1.840746e6

GenotypeQuality
all individuals: 102
bin: 2.25e1
variant carriers: 102

GenotypeQuality
all individuals: 288
bin: 6.75e1
variant carriers: 288

GenotypeQuality
all individuals: 290
bin: 8.75e1
variant carriers: 290

GenotypeQuality
all individuals: 56753
bin: 9.75e1
variant carriers: 56752

GenotypeQuality
all individuals: 379
bin: 9.25e1
variant carriers: 379

GenotypeQuality
all individuals: 328
bin: 8.25e1
variant carriers: 328

East Asian
type: Population
allele count: 4505
allele frequency: 5.235936773593677e-1
allele num: 8604
num of homozygotes: 204

African
type: Population
allele count: 5243
allele frequency: 5.117118875658794e-1
allele num: 10246
num of homozygotes: 122

Other
type: Population
allele count: 464
allele frequency: 5.237020316027088e-1
allele num: 886
num of homozygotes: 21

Latino
type: Population
allele count: 6072
allele frequency: 5.293809938971229e-1
allele num: 11470
num of homozygotes: 337

European (Non-Finnish)
type: Population
allele count: 34377
allele frequency: 5.212743373567053e-1
allele num: 65948
num of homozygotes: 1403

European (Finnish)
type: Population
allele count: 3368
allele frequency: 5.213622291021672e-1
allele num: 6460
num of homozygotes: 138

South Asian
type: Population
allele count: 8975
allele frequency: 5.46789326184964e-1
allele num: 16414
num of homozygotes: 768

MQ
type: SiteQuality
SIO_000300: 5.825e1

DP
type: SiteQuality
SIO_000300: 2.816491e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.958e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.983e1

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

FS
type: SiteQuality
SIO_000300: 3.481e0

QD
type: SiteQuality
SIO_000300: 1.634e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8336
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21497
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8705
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3328
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65748
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.898722e6

QD
type: SiteQuality
SIO_000300: 7.09e0

MQ
type: SiteQuality
SIO_000300: 5.806e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.726e0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.75e0