X-153036109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036109
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036109
    reference: chr 0
allele count: 4
allele frequency: 5.231562013628219e-5
allele num: 76459
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+12C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+12C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+12C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+208C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+12C>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4469
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genotype quality: GenotypeQuality
  all individuals: 938
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

X-153036110-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036110
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036110
    reference: chr 0
allele count: 22
allele frequency: 2.876606650191556e-4
allele num: 76479
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+13G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+13G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+209G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+13G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+13G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

X-153036112-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036112
    reference: chr 0
allele count: 1
allele frequency: 1.304189055245448e-5
allele num: 76676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+15A>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+15A>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+211A>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+15A>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+15A>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

X-153036115-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036115
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036115
    reference: chr 0
allele count: 3
allele frequency: 3.917420770164924e-5
allele num: 76581
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+18T>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+18T>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+18T>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+214T>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+18T>C
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11879
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

X-153036116-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036116
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036116
    reference: chr 0
allele count: 9
allele frequency: 1.179368906593983e-4
allele num: 76312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+19C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+19C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+19C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+19C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+215C>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9051
  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

X-153036117-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036117
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036117
    reference: chr 0
allele count: 12
allele frequency: 1.572904105279715e-4
allele num: 76292
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+20G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+20G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+20G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+216G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+20G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

X-153036122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036122
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036122
    reference: chr 0
allele count: 1
allele frequency: 1.307890503407055e-5
allele num: 76459
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+25G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+25G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+221G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+25G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+25G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-153036124-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036124
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036124
    reference: chr 0
allele count: 1
allele frequency: 1.308986190195694e-5
allele num: 76395
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+27G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+27G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+223G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+27G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+27G>C
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

X-153036126-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036126
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036126
    reference: chr 0
allele count: 3
allele frequency: 3.931641853638079e-5
allele num: 76304
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+29C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+225C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+29C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+29C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+29C>G
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4586
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12629
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5508
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-153036129-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036129
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036129
    reference: chr 0
allele count: 1
allele frequency: 1.308044473512099e-5
allele num: 76450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+228G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+32G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+32G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+32G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+32G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12620
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5503
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP

X-153036135-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036135
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036135
    reference: chr 0
allele count: 3
allele frequency: 3.936852879807882e-5
allele num: 76203
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+38C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+234C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+38C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+38C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+38C>G
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8397
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13001
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8441
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12583
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11503
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
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genotype quality: GenotypeQuality
  all individuals: 3913
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

X-153036140-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036140
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036140
    reference: chr 0
allele count: 1
allele frequency: 1.304801670146138e-5
allele num: 76640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+43C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+43C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+43C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+239C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+43C>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
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genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12043
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

X-153036145-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036145
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036145
    reference: chr 0
allele count: 1
allele frequency: 1.29996750081248e-5
allele num: 76925
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.545+244C>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2079+48C>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.840+48C>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.969+48C>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2010+48C>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4098
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3594
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4401
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11679
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

X-153036166-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036166
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036166
    reference: chr 0
allele count: 297
allele frequency: 3.601047577477084e-3
allele num: 82476
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-47A>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-254A>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-47A>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-47A>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-47A>G
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 1.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 822
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  variant carriers: 7
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
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  variant carriers: 24
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 2440
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  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1860
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  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 9323
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7931
  bin: 1.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
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  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 469
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 118
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
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genotype quality: GenotypeQuality
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  variant carriers: 18
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1999
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genotype quality: GenotypeQuality
  all individuals: 12337
  bin: 9.75e1
  variant carriers: 140
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 5.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 11440
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 543
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  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 682
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genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 4.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 9.25e1
  variant carriers: 6
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-153036174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036174
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036174
    reference: chr 0
allele count: 1
allele frequency: 1.213975283463229e-5
allele num: 82374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-39C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-39C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-39C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-39C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-246C>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12320
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5518
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2883
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 329
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

X-153036179-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036179
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036179
    reference: chr 0
allele count: 1
allele frequency: 1.213489145339595e-5
allele num: 82407
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-34A>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-34A>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-241A>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-34A>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-34A>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2429
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

X-153036180-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036180
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036180
    reference: chr 0
allele count: 3
allele frequency: 3.639628272632422e-5
allele num: 82426
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-33G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-33G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-240G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-33G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-33G>C
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

X-153036185-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036185
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036185
    reference: chr 0
allele count: 2
allele frequency: 2.427361215622497e-5
allele num: 82394
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-28G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-28G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-235G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-28G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-28G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
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site quality: ClippingRankSum

X-153036188-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036188
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036188
    reference: chr 0
allele count: 1
allele frequency: 1.212650368645712e-5
allele num: 82464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-232G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-25G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-25G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-25G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-25G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-153036188-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036188
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036188
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 82464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-25G>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-25G>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-25G>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-232G>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-25G>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 173
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD

X-153036196-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036196
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036196
    reference: chr 0
allele count: 8
allele frequency: 9.675273628832316e-5
allele num: 82685
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-17G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-17G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-224G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-17G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-17G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19819
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153036197-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036197
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036197
    reference: chr 0
allele count: 1
allele frequency: 1.208926714862545e-5
allele num: 82718
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-16G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-16G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-223G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-16G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-16G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1781
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4284
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1675
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genotype quality: GenotypeQuality
  all individuals: 370
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

X-153036203-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036203
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036203
    reference: chr 0
allele count: 3
allele frequency: 3.619516432604604e-5
allele num: 82884
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-10G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-10G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-217G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-10G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-10G>C
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17527
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7357
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1231
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2634
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5722
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1402
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genotype quality: GenotypeQuality
  all individuals: 1389
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 194
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

X-153036207-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036207
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036206
    reference: chr 0
allele count: 1
allele frequency: 1.204325938772069e-5
allele num: 83034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-3delC
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-210delC
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-3delC
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-3delC
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-3delC
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 464
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2601
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 8.75e1
  variant carriers: 0
hgvs: c.2080-3delC
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: TC
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-153036209-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036209
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036209
    reference: chr 0
allele count: 1
allele frequency: 1.204021431581482e-5
allele num: 83055
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-211C>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-4C>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-4C>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-4C>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-4C>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5834
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12325
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3921
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
hgvs: c.2080-4C>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

X-153036209-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036209
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036209
    reference: chr 0
allele count: 1
allele frequency: 1.204021431581482e-5
allele num: 83055
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-211C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.841-4C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2080-4C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2011-4C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.970-4C>G
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12325
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3921
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1158
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
hgvs: c.2080-4C>G
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-153036222-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036222
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036222
    reference: chr 0
allele count: 3
allele frequency: 3.593890386343217e-5
allele num: 83475
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2089C>G
  hgvsp: ENSP00000442736.1:p.Gln697Glu
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.979C>G
  hgvsp: ENSP00000445569.1:p.Gln327Glu
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-198C>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.850C>G
  hgvsp: ENSP00000441919.1:p.Gln284Glu
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2020C>G
  hgvsp: ENSP00000355378.5:p.Gln674Glu
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12333
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
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genotype quality: GenotypeQuality
  all individuals: 22064
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3524
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2693
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genotype quality: GenotypeQuality
  all individuals: 1956
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln697Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

X-153036225-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036225
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036225
    reference: chr 0
allele count: 52
allele frequency: 6.21749267651103e-4
allele num: 83635
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2023G>A
  hgvsp: ENSP00000355378.5:p.Val675Met
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-195G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.853G>A
  hgvsp: ENSP00000441919.1:p.Val285Met
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.982G>A
  hgvsp: ENSP00000445569.1:p.Val328Met
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2092G>A
  hgvsp: ENSP00000442736.1:p.Val698Met
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1851
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12444
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2607
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7751
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1233
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18261
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 174
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genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 65
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3480
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1957
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 332
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val698Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

X-153036226-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036226
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036226
    reference: chr 0
allele count: 1
allele frequency: 1.19548584544759e-5
allele num: 83648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.854T>G
  hgvsp: ENSP00000441919.1:p.Val285Gly
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2093T>G
  hgvsp: ENSP00000442736.1:p.Val698Gly
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-194T>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2024T>G
  hgvsp: ENSP00000355378.5:p.Val675Gly
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.983T>G
  hgvsp: ENSP00000445569.1:p.Val328Gly
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 64
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12339
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val698Gly
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

X-153036228-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036228
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036228
    reference: chr 0
allele count: 1
allele frequency: 1.195471553754378e-5
allele num: 83649
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-192C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.985C>T
  hgvsp: ENSP00000445569.1:p.Arg329Cys
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.856C>T
  hgvsp: ENSP00000441919.1:p.Arg286Cys
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2026C>T
  hgvsp: ENSP00000355378.5:p.Arg676Cys
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2095C>T
  hgvsp: ENSP00000442736.1:p.Arg699Cys
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 12579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg699Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-153036229-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036229
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036229
    reference: chr 0
allele count: 3
allele frequency: 3.582217870490883e-5
allele num: 83747
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-191G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.986G>A
  hgvsp: ENSP00000445569.1:p.Arg329His
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.857G>A
  hgvsp: ENSP00000441919.1:p.Arg286His
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2096G>A
  hgvsp: ENSP00000442736.1:p.Arg699His
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2027G>A
  hgvsp: ENSP00000355378.5:p.Arg676His
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 871
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  variant carriers: 0
hgvs: p.Arg699His
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

X-153036240-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036240
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036240
    reference: chr 0
allele count: 1
allele frequency: 1.189654762188013e-5
allele num: 84058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.997G>A
  hgvsp: ENSP00000445569.1:p.Ala333Thr
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-180G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2107G>A
  hgvsp: ENSP00000442736.1:p.Ala703Thr
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.868G>A
  hgvsp: ENSP00000441919.1:p.Ala290Thr
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2038G>A
  hgvsp: ENSP00000355378.5:p.Ala680Thr
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1860
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala703Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

X-153036251-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036251
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036251
    reference: chr 0
allele count: 1
allele frequency: 1.184623585855594e-5
allele num: 84415
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1008G>C
  hgvsp: ENSP00000445569.1:p.Gln336His
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-169G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.879G>C
  hgvsp: ENSP00000441919.1:p.Gln293His
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2049G>C
  hgvsp: ENSP00000355378.5:p.Gln683His
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2118G>C
  hgvsp: ENSP00000442736.1:p.Gln706His
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 822
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
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genotype depth: GenotypeDepth
  all individuals: 64
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genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 629
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln706His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-153036251-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036251
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036251
    reference: chr 0
allele count: 2
allele frequency: 2.369247171711189e-5
allele num: 84415
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2049G>T
  hgvsp: ENSP00000355378.5:p.Gln683His
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2118G>T
  hgvsp: ENSP00000442736.1:p.Gln706His
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1008G>T
  hgvsp: ENSP00000445569.1:p.Gln336His
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-169G>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.879G>T
  hgvsp: ENSP00000441919.1:p.Gln293His
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6509
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
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genotype quality: GenotypeQuality
  all individuals: 2674
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genotype quality: GenotypeQuality
  all individuals: 629
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 45
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln706His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

X-153036254-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036254
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036254
    reference: chr 0
allele count: 1
allele frequency: 1.183221913269834e-5
allele num: 84515
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2121C>T
  hgvsp: ENST00000538966.1:c.2121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-166C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1011C>T
  hgvsp: ENST00000538776.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.882C>T
  hgvsp: ENST00000538282.1:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2052C>T
  hgvsp: ENST00000361971.5:c.2052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13707
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 574
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val707Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

X-153036255-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036255
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036255
    reference: chr 0
allele count: 13
allele frequency: 1.537115425544493e-4
allele num: 84574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.883G>A
  hgvsp: ENSP00000441919.1:p.Glu295Lys
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-165G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2053G>A
  hgvsp: ENSP00000355378.5:p.Glu685Lys
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1012G>A
  hgvsp: ENSP00000445569.1:p.Glu338Lys
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2122G>A
  hgvsp: ENSP00000442736.1:p.Glu708Lys
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
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genotype depth: GenotypeDepth
  all individuals: 4573
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu708Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

X-153036256-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036256
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036256
    reference: chr 0
allele count: 1
allele frequency: 1.181823553743426e-5
allele num: 84615
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2123A>G
  hgvsp: ENSP00000442736.1:p.Glu708Gly
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-164A>G
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2054A>G
  hgvsp: ENSP00000355378.5:p.Glu685Gly
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.884A>G
  hgvsp: ENSP00000441919.1:p.Glu295Gly
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1013A>G
  hgvsp: ENSP00000445569.1:p.Glu338Gly
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13831
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18420
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1475
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genotype quality: GenotypeQuality
  all individuals: 325
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23366
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2931
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12385
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Glu708Gly
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

X-153036262-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036262
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036262
    reference: chr 0
allele count: 1
allele frequency: 1.179300910420303e-5
allele num: 84796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2060T>A
  hgvsp: ENSP00000355378.5:p.Leu687Gln
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2129T>A
  hgvsp: ENSP00000442736.1:p.Leu710Gln
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.890T>A
  hgvsp: ENSP00000441919.1:p.Leu297Gln
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1019T>A
  hgvsp: ENSP00000445569.1:p.Leu340Gln
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-158T>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18567
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6661
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
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genotype quality: GenotypeQuality
  all individuals: 127
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genotype quality: GenotypeQuality
  all individuals: 1479
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genotype quality: GenotypeQuality
  all individuals: 94
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu710Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

X-153036268-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036268
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036268
    reference: chr 0
allele count: 1
allele frequency: 1.177745324351062e-5
allele num: 84908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2066G>A
  hgvsp: ENSP00000355378.5:p.Gly689Asp
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.896G>A
  hgvsp: ENSP00000441919.1:p.Gly299Asp
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2135G>A
  hgvsp: ENSP00000442736.1:p.Gly712Asp
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1025G>A
  hgvsp: ENSP00000445569.1:p.Gly342Asp
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-152G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18383
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14268
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 2466
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 122
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genotype depth: GenotypeDepth
  all individuals: 176
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1480
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genotype quality: GenotypeQuality
  all individuals: 145
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genotype quality: GenotypeQuality
  all individuals: 2189
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3654
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly712Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

X-153036275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036275
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036275
    reference: chr 0
allele count: 1
allele frequency: 1.176027848339449e-5
allele num: 85032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-145C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2142C>T
  hgvsp: ENST00000538966.1:c.2142C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.903C>T
  hgvsp: ENST00000538282.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2073C>T
  hgvsp: ENST00000361971.5:c.2073C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1032C>T
  hgvsp: ENST00000538776.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1575
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genotype depth: GenotypeDepth
  all individuals: 3370
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genotype depth: GenotypeDepth
  all individuals: 66
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genotype depth: GenotypeDepth
  all individuals: 1886
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 176
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2936
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His714His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

X-153036284-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036284
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036284
    reference: chr 0
allele count: 2
allele frequency: 2.349651664140791e-5
allele num: 85119
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2082T>C
  hgvsp: ENST00000361971.5:c.2082T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2151T>C
  hgvsp: ENST00000538966.1:c.2151T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-136T>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1041T>C
  hgvsp: ENST00000538776.1:c.1041T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.912T>C
  hgvsp: ENST00000538282.1:c.912T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8722
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3760
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6838
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro717Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-153036285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036285
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036285
    reference: chr 0
allele count: 1
allele frequency: 1.174439498749222e-5
allele num: 85147
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-135G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.913G>A
  hgvsp: ENSP00000441919.1:p.Val305Met
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1042G>A
  hgvsp: ENSP00000445569.1:p.Val348Met
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2083G>A
  hgvsp: ENSP00000355378.5:p.Val695Met
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2152G>A
  hgvsp: ENSP00000442736.1:p.Val718Met
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17959
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3088
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val718Met
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD

X-153036287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036287
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036287
    reference: chr 0
allele count: 3
allele frequency: 3.523690948812516e-5
allele num: 85138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1044G>A
  hgvsp: ENST00000538776.1:c.1044G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2154G>A
  hgvsp: ENST00000538966.1:c.2154G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.915G>A
  hgvsp: ENST00000538282.1:c.915G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2085G>A
  hgvsp: ENST00000361971.5:c.2085G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-133G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1891
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17934
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24036
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 345
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12566
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 375
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3777
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3094
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val718Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-153036292-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036292
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036292
    reference: chr 0
allele count: 1
allele frequency: 1.173998285962503e-5
allele num: 85179
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-128G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2159G>C
  hgvsp: ENSP00000442736.1:p.Trp720Ser
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.920G>C
  hgvsp: ENSP00000441919.1:p.Trp307Ser
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1049G>C
  hgvsp: ENSP00000445569.1:p.Trp350Ser
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2090G>C
  hgvsp: ENSP00000355378.5:p.Trp697Ser
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Trp720Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

X-153036293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036293
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036293
    reference: chr 0
allele count: 1
allele frequency: 1.173970721170214e-5
allele num: 85181
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1050G>A
  hgvsp: ENSP00000445569.1:p.Trp350Ter
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.921G>A
  hgvsp: ENSP00000441919.1:p.Trp307Ter
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2160G>A
  hgvsp: ENSP00000442736.1:p.Trp720Ter
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2091G>A
  hgvsp: ENSP00000355378.5:p.Trp697Ter
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-127G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 3376
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
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genotype quality: GenotypeQuality
  all individuals: 33
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12565
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 291
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genotype quality: GenotypeQuality
  all individuals: 2036
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genotype quality: GenotypeQuality
  all individuals: 2074
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genotype quality: GenotypeQuality
  all individuals: 334
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24152
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Trp720Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

X-153036296-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036296
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036296
    reference: chr 0
allele count: 1
allele frequency: 1.174163701903319e-5
allele num: 85167
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1053G>A
  hgvsp: ENST00000538776.1:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.924G>A
  hgvsp: ENST00000538282.1:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2163G>A
  hgvsp: ENST00000538966.1:c.2163G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-124G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2094G>A
  hgvsp: ENST00000361971.5:c.2094G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3097
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6894
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3782
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
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genotype quality: GenotypeQuality
  all individuals: 360
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12571
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu721Glu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

X-153036296-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036296
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036296
    reference: chr 0
allele count: 1
allele frequency: 1.174163701903319e-5
allele num: 85167
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2094G>C
  hgvsp: ENSP00000355378.5:p.Glu698Asp
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1053G>C
  hgvsp: ENSP00000445569.1:p.Glu351Asp
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.924G>C
  hgvsp: ENSP00000441919.1:p.Glu308Asp
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2163G>C
  hgvsp: ENSP00000442736.1:p.Glu721Asp
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-124G>C
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14659
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 123
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genotype quality: GenotypeQuality
  all individuals: 3097
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23958
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu721Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

X-153036308-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036308
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036308
    reference: chr 0
allele count: 24
allele frequency: 2.822035393027221e-4
allele num: 85045
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1065C>T
  hgvsp: ENST00000538776.1:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.936C>T
  hgvsp: ENST00000538282.1:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-112C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2106C>T
  hgvsp: ENST00000361971.5:c.2106C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2175C>T
  hgvsp: ENST00000538966.1:c.2175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8834
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17045
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14662
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6867
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12583
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala725Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-153036314-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036314
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036314
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 84972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1071C>A
  hgvsp: ENST00000538776.1:c.1071C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-106C>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.942C>A
  hgvsp: ENST00000538282.1:c.942C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2112C>A
  hgvsp: ENST00000361971.5:c.2112C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2181C>A
  hgvsp: ENST00000538966.1:c.2181C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 8846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1697
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16847
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 464
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genotype depth: GenotypeDepth
  all individuals: 3378
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genotype depth: GenotypeDepth
  all individuals: 632
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 469
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
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genotype quality: GenotypeQuality
  all individuals: 82
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 140
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 244
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genotype quality: GenotypeQuality
  all individuals: 105
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12578
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Arg727Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-153036314-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036314
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036314
    reference: chr 0
allele count: 4
allele frequency: 4.707433036765052e-5
allele num: 84972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.942C>T
  hgvsp: ENST00000538282.1:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2181C>T
  hgvsp: ENST00000538966.1:c.2181C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1071C>T
  hgvsp: ENST00000538776.1:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2112C>T
  hgvsp: ENST00000361971.5:c.2112C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-106C>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12578
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2962
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genotype quality: GenotypeQuality
  all individuals: 469
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genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
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genotype quality: GenotypeQuality
  all individuals: 244
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genotype quality: GenotypeQuality
  all individuals: 96
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genotype quality: GenotypeQuality
  all individuals: 418
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg727Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-153036315-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036315
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036315
    reference: chr 0
allele count: 2
allele frequency: 2.352553697038135e-5
allele num: 85014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1072G>A
  hgvsp: ENSP00000445569.1:p.Val358Met
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2182G>A
  hgvsp: ENSP00000442736.1:p.Val728Met
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.943G>A
  hgvsp: ENSP00000441919.1:p.Val315Met
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-105G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2113G>A
  hgvsp: ENSP00000355378.5:p.Val705Met
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16873
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3794
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 410
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genotype quality: GenotypeQuality
  all individuals: 88
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genotype quality: GenotypeQuality
  all individuals: 233
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3092
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val728Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

X-153036318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036318
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036318
    reference: chr 0
allele count: 5
allele frequency: 5.887894488930759e-5
allele num: 84920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.946C>T
  hgvsp: ENSP00000441919.1:p.Arg316Trp
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1075C>T
  hgvsp: ENSP00000445569.1:p.Arg359Trp
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2116C>T
  hgvsp: ENSP00000355378.5:p.Arg706Trp
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-102C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2185C>T
  hgvsp: ENSP00000442736.1:p.Arg729Trp
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23080
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3088
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3789
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg729Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-153036319-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036319
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036319
    reference: chr 0
allele count: 5
allele frequency: 5.884429798752501e-5
allele num: 84970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1076G>A
  hgvsp: ENSP00000445569.1:p.Arg359Gln
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-101G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.947G>A
  hgvsp: ENSP00000441919.1:p.Arg316Gln
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2186G>A
  hgvsp: ENSP00000442736.1:p.Arg729Gln
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2117G>A
  hgvsp: ENSP00000355378.5:p.Arg706Gln
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16766
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1256
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6843
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23120
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genotype quality: GenotypeQuality
  all individuals: 90
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg729Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

X-153036331-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036331
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036331
    reference: chr 0
allele count: 1
allele frequency: 1.179398271002135e-5
allele num: 84789
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2198A>G
  hgvsp: ENSP00000442736.1:p.His733Arg
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1088A>G
  hgvsp: ENSP00000445569.1:p.His363Arg
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2129A>G
  hgvsp: ENSP00000355378.5:p.His710Arg
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.959A>G
  hgvsp: ENSP00000441919.1:p.His320Arg
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-89A>G
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8810
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22686
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His733Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum

X-153036337-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036337
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036337
    reference: chr 0
allele count: 6
allele frequency: 7.083574371627923e-5
allele num: 84703
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1094G>A
  hgvsp: ENSP00000445569.1:p.Arg365Gln
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.965G>A
  hgvsp: ENSP00000441919.1:p.Arg322Gln
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2204G>A
  hgvsp: ENSP00000442736.1:p.Arg735Gln
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-83G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2135G>A
  hgvsp: ENSP00000355378.5:p.Arg712Gln
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3797
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12580
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 553
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg735Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

X-153036341-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036341
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036341
    reference: chr 0
allele count: 1
allele frequency: 1.181530318067962e-5
allele num: 84636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+3G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+3G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+3G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-79G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+3G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 6779
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
hgvs: c.2205+3G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

X-153036345-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036345
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036345
    reference: chr 0
allele count: 1
allele frequency: 1.18246638839291e-5
allele num: 84569
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+7C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-75C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+7C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+7C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+7C>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 176
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 466
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
hgvs: c.2205+7C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

X-153036348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036348
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036348
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 84529
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+10C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+10C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-72C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+10C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+10C>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8781
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3800
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genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

X-153036351-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036351
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036351
    reference: chr 0
allele count: 1
allele frequency: 1.18284403018618e-5
allele num: 84542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+13G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+13G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-69G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+13G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+13G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-153036353-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036353
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036353
    reference: chr 0
allele count: 2
allele frequency: 2.366163856847087e-5
allele num: 84525
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+15G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+15G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-67G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+15G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+15G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 300
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genotype depth: GenotypeDepth
  all individuals: 466
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12581
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 315
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 559
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

X-153036358-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036358
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036358
    reference: chr 0
allele count: 1
allele frequency: 1.183305920079518e-5
allele num: 84509
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+20G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-62G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+20G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+20G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+20G>C
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 125
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
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genotype depth: GenotypeDepth
  all individuals: 67
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2633
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genotype quality: GenotypeQuality
  all individuals: 147
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genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
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genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 7.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2959
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genotype quality: GenotypeQuality
  all individuals: 38
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS

X-153036359-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036359
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036359
    reference: chr 0
allele count: 1
allele frequency: 1.183109922742922e-5
allele num: 84523
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-61G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+21G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+21G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+21G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+21G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16458
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 126
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 315
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6760
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2961
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

X-153036361-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036361
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036361
    reference: chr 0
allele count: 1
allele frequency: 1.183347927957778e-5
allele num: 84506
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+23G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-59G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+23G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+23G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+23G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 176
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 300
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2666
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genotype quality: GenotypeQuality
  all individuals: 492
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 148
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12582
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

X-153036365-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036365
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036365
    reference: chr 0
allele count: 1
allele frequency: 1.183866270466088e-5
allele num: 84469
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+27G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-55G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+27G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+27G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+27G>C
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3064
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6748
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12581
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-153036366-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036366
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036366
    reference: chr 0
allele count: 1
allele frequency: 1.183698109634119e-5
allele num: 84481
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+28G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+28G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-54G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+28G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+28G>C
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14197
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6750
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
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genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

X-153036367-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036367
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036367
    reference: chr 0
allele count: 3
allele frequency: 3.551052295163467e-5
allele num: 84482
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+29G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-53G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+29G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+29G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+29G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12583
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3788
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

X-153036367-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036367
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036366
    reference: chr 0
allele count: 1
allele frequency: 1.183684098387822e-5
allele num: 84482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+30delC
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+30delC
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+30delC
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+30delC
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-52delC
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: GC
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-153036372-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036372
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036372
    reference: chr 0
allele count: 1
allele frequency: 1.18383824034284e-5
allele num: 84471
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+34G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+34G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+34G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-48G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+34G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3787
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 89
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22521
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS

X-153036375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036375
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036375
    reference: chr 0
allele count: 2
allele frequency: 2.367172057901029e-5
allele num: 84489
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2205+37G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.966+37G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2136+37G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-45G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1095+37G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16483
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
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genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
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genotype quality: GenotypeQuality
  all individuals: 3786
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

X-153036387-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036387
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036387
    reference: chr 0
allele count: 2
allele frequency: 2.370510845087116e-5
allele num: 84370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2137-33C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-33C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.967-33C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1096-33C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2206-33C>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8753
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3050
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

X-153036388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036388
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036388
    reference: chr 0
allele count: 1
allele frequency: 1.18375415793648e-5
allele num: 84477
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-32G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.967-32G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1096-32G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2206-32G>A
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2137-32G>A
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6742
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12581
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

X-153036388-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036388
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036388
    reference: chr 0
allele count: 1
allele frequency: 1.18375415793648e-5
allele num: 84477
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1096-32G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.967-32G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-32G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2206-32G>C
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2137-32G>C
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12581
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22451
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

X-153036393-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036393
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036393
    reference: chr 0
allele count: 2
allele frequency: 2.368153077414924e-5
allele num: 84454
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2206-27C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2137-27C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.967-27C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1096-27C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-27C>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2679
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12583
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2944
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ

X-153036407-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153036407
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153036407
    reference: chr 0
allele count: 7
allele frequency: 8.277656240761544e-5
allele num: 84565
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000444086
  ensembl transcript: ENST00000538543
  gene symbol: PLXNB3
  hgvsc: ENST00000538543.1:c.546-13C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000445569
  ensembl transcript: ENST00000538776
  gene symbol: PLXNB3
  hgvsc: ENST00000538776.1:c.1096-13C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000442736
  ensembl transcript: ENST00000538966
  gene symbol: PLXNB3
  hgvsc: ENST00000538966.1:c.2206-13C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000441919
  ensembl transcript: ENST00000538282
  gene symbol: PLXNB3
  hgvsc: ENST00000538282.1:c.967-13C>T
  variant of: http://identifiers.org/hgnc/9105
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198753
  ensembl protein: ENSP00000355378
  ensembl transcript: ENST00000361971
  gene symbol: PLXNB3
  hgvsc: ENST00000361971.5:c.2137-13C>T
  variant of: http://identifiers.org/hgnc/9105
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22381
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2944
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6684
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3039
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

GenotypeQuality
all individuals: 519
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 589
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3545
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.661681621801263e-4
allele num: 6018
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.154467790348649e-4
allele num: 8662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.814404698858986e-5
allele num: 41542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

DP
type: SiteQuality
SIO_000300: 1.19822e6

QD
type: SiteQuality
SIO_000300: 1.758e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 1.2849e1

VQSLOD
type: SiteQuality
SIO_000300: -2.047e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1250
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2105
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 481
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 454
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 521
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.20296410355115e-4
allele num: 41564
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.299883010529053e-4
allele num: 7693
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 9.978380176284716e-4
allele num: 6013
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 8.071955719557196e-4
allele num: 8672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.550295857988166e-4
allele num: 8450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3561
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.197587e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
SIO_000300: 1.838e1

GenotypeQuality
all individuals: 12982
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4521
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15460
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8465
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6033
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.401421641611834e-5
allele num: 41642
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.57e-1

QD
type: SiteQuality
SIO_000300: 1.398e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 9.880000000000001e0

DP
type: SiteQuality
SIO_000300: 1.195214e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.762e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1572
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8473
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8663
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.883997928534438e-4
allele num: 7724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41579
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.371e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.82e-1

FS
type: SiteQuality
SIO_000300: 1.6204e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

QD
type: SiteQuality
SIO_000300: 1.397e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

DP
type: SiteQuality
SIO_000300: 1.192901e6

GenotypeQuality
all individuals: 699
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6005
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3569
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 525
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41442
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.044689495066744e-3
allele num: 8615
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.191411e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

QD
type: SiteQuality
SIO_000300: 2.362e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

FS
type: SiteQuality
SIO_000300: 7.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

GenotypeQuality
all individuals: 691
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5441
bin: 3.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.20679667889554e-4
allele num: 41432
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.482298316889147e-4
allele num: 8615
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.298532658096351e-4
allele num: 7701
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5993
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3587
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.554502369668246e-4
allele num: 8440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 1.193303e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.838e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1709
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7715
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.408303831611396e-5
allele num: 41523
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8621
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 525
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3605
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.191865e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.319e0

FS
type: SiteQuality
SIO_000300: 3.155e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.96e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.289e1

GenotypeQuality
all individuals: 996
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15014
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7717
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41507
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8443
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.16346713205352e-4
allele num: 8595
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 529
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.999e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

DP
type: SiteQuality
SIO_000300: 1.191669e6

GenotypeQuality
all individuals: 14579
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3763
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.89155532494487e-4
allele num: 7709
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41465
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 2.122e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.51e-1

FS
type: SiteQuality
SIO_000300: 1.311e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 1.191291e6

VQSLOD
type: SiteQuality
SIO_000300: -4.898e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

GenotypeQuality
all individuals: 4102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 4.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3605
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8447
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6021
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 527
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.406970586819429e-5
allele num: 41546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.883e1

QD
type: SiteQuality
SIO_000300: 3.062e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.373e-1

DP
type: SiteQuality
SIO_000300: 1.194226e6

GenotypeQuality
all individuals: 1779
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 513
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5521
bin: 3.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41455
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7707
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8437
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.367984844896993e-4
allele num: 8446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3617
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.89753320683112e-3
allele num: 527
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.137e0

VQSLOD
type: SiteQuality
SIO_000300: -2.312e0

DP
type: SiteQuality
SIO_000300: 1.199293e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

FS
type: SiteQuality
SIO_000300: 1.317e0

QD
type: SiteQuality
SIO_000300: 2.208e1

GenotypeQuality
all individuals: 4286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1086
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8469
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3645
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.39652982481367e-5
allele num: 41727
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8487
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 5.905e0

DP
type: SiteQuality
SIO_000300: 1.210675e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.224e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.105e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

GenotypeQuality
all individuals: 541
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5078
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41903
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8487
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3687
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8495
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.648804616652927e-4
allele num: 6065
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.05e-1

DP
type: SiteQuality
SIO_000300: 1.227421e6

FS
type: SiteQuality
SIO_000300: 4.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

QD
type: SiteQuality
SIO_000300: 1.08e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.42e-1

GenotypeQuality
all individuals: 445
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2314
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 4734
bin: 6.75e1
variant carriers: 11

GenotypeQuality
all individuals: 353
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3108
bin: 3.25e1
variant carriers: 18

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.336448598130841e-4
allele num: 4280
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.235330450895614e-4
allele num: 8095
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 5.208333333333333e-3
allele num: 576
num of homozygotes: 0

South Asian
type: Population
allele count: 225
allele frequency: 2.640225299225534e-2
allele num: 8522
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 62
allele frequency: 1.366120218579235e-3
allele num: 45384
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.700600646850454e-4
allele num: 6493
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.825e1

DP
type: SiteQuality
SIO_000300: 1.650861e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.324e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.605e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

QD
type: SiteQuality
SIO_000300: 1.897e1

GenotypeQuality
all individuals: 4599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2000
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4285
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.187225454113736e-4
allele num: 8423
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8077
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

DP
type: SiteQuality
SIO_000300: 1.664946e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.943e1

VQSLOD
type: SiteQuality
SIO_000300: 7.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.38e1

GenotypeQuality
all individuals: 16086
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 573
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.192605843768634e-4
allele num: 8385
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9135
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.25e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 1.829e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.76e-1

DP
type: SiteQuality
SIO_000300: 1.681505e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.102e0

GenotypeQuality
all individuals: 2954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2286
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6503
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4293
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45445
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9141
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.574407244132015e-4
allele num: 8393
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.683891e6

FS
type: SiteQuality
SIO_000300: 5.021e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

VQSLOD
type: SiteQuality
SIO_000300: -2.183e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

QD
type: SiteQuality
SIO_000300: 2.561e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

GenotypeQuality
all individuals: 1765
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17398
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2326
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8071
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9149
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 573
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.396357536544453e-4
allele num: 8346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6503
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45452
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 2.031e1

DP
type: SiteQuality
SIO_000300: 1.697411e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

FS
type: SiteQuality
SIO_000300: 1.529e0

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.146e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6509
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.236858379715523e-4
allele num: 8085
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4304
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

DP
type: SiteQuality
SIO_000300: 1.706819e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

QD
type: SiteQuality
SIO_000300: 1.444e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

GenotypeQuality
all individuals: 4441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3072
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6509
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8085
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

FS
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.444e1

DP
type: SiteQuality
SIO_000300: 1.706819e6

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

GenotypeQuality
all individuals: 4288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
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variant carriers: 2

GenotypeQuality
all individuals: 2499
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variant carriers: 0

GenotypeQuality
all individuals: 12312
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variant carriers: 3

GenotypeQuality
all individuals: 712
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6535
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 9.577397342272237e-4
allele num: 8353
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 575
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4321
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9165
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45636
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.730418e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.122e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-1

FS
type: SiteQuality
SIO_000300: 1.664e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.031e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 705
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12316
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19945
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variant carriers: 0

GenotypeQuality
all individuals: 1931
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4327
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.234263144902493e-4
allele num: 8102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8355
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.093e0

QD
type: SiteQuality
SIO_000300: 1.162e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

FS
type: SiteQuality
SIO_000300: 2.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.072e0

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

DP
type: SiteQuality
SIO_000300: 1.732606e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.132e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12323
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4063
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variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.231375446373599e-4
allele num: 8121
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4335
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 581
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.37177581533619e-5
allele num: 45748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9179
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

DP
type: SiteQuality
SIO_000300: 1.7458e6

VQSLOD
type: SiteQuality
SIO_000300: 3.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

QD
type: SiteQuality
SIO_000300: 1.693e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2652
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4351
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9189
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.182548343445807e-5
allele num: 45818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8139
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8393
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.752064e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.693e1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 3.983e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.132e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.54e-1

QD
type: SiteQuality
SIO_000300: 1.938e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
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GenotypeQuality
all individuals: 1414
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6567
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8141
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.182024482314691e-5
allele num: 45829
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9191
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.555e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.309e-1

FS
type: SiteQuality
SIO_000300: 8.791e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.75625e6

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.82e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 216
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variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6567
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.088020890001088e-4
allele num: 9191
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8141
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45829
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 8386
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.75625e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.82e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.555e1

FS
type: SiteQuality
SIO_000300: 8.791e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.478e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 287
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variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9211
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.344520473552731e-5
allele num: 46035
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.221001221001221e-4
allele num: 8190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8487
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

QD
type: SiteQuality
SIO_000300: 1.238e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.379e0

FS
type: SiteQuality
SIO_000300: 2.333e0

DP
type: SiteQuality
SIO_000300: 1.777558e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22221
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6155
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12352
bin: 9.75e1
variant carriers: 41

GenotypeQuality
all individuals: 1433
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.27842333105491e-4
allele num: 4389
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.653635367190354e-4
allele num: 8211
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 44
allele frequency: 9.547160804565278e-4
allele num: 46087
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.339336081579518e-4
allele num: 9218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

DP
type: SiteQuality
SIO_000300: 1.782916e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.155e-1

FS
type: SiteQuality
SIO_000300: 1.843e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

QD
type: SiteQuality
SIO_000300: 1.749e1

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.084951719648476e-4
allele num: 9217
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8557
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46099
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6593
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.67e0

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

FS
type: SiteQuality
SIO_000300: 1.048e0

QD
type: SiteQuality
SIO_000300: 1.134e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.783161e6

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2712
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6174
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12339
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.171097318187141e-4
allele num: 8539
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9223
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8215
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46100
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.485e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.482e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 1.786612e6

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.011e0

QD
type: SiteQuality
SIO_000300: 2.352e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2760
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variant carriers: 0

GenotypeQuality
all individuals: 6215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12343
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.433386056697895e-4
allele num: 8219
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8599
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.167645719983526e-5
allele num: 46133
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9219
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

FS
type: SiteQuality
SIO_000300: 4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.806e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.788552e6

QD
type: SiteQuality
SIO_000300: 2.187e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

GenotypeQuality
all individuals: 750
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
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variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8775
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9227
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4413
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8213
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.162676528471636e-5
allele num: 46239
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.356e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.293e1

DP
type: SiteQuality
SIO_000300: 1.803105e6

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.046e0

GenotypeQuality
all individuals: 6509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12365
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variant carriers: 0

GenotypeQuality
all individuals: 426
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variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.158615032595087e-5
allele num: 46326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9245
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.725e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -1.521e0

VQSLOD
type: SiteQuality
SIO_000300: -5.048e-1

FS
type: SiteQuality
SIO_000300: 4.486e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.579e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

DP
type: SiteQuality
SIO_000300: 1.815259e6

GenotypeQuality
all individuals: 12365
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
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variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23066
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.213297743266198e-4
allele num: 8242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9245
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.114827201783724e-4
allele num: 8970
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.486e0

QD
type: SiteQuality
SIO_000300: 1.579e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.725e0

VQSLOD
type: SiteQuality
SIO_000300: -5.048e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -1.521e0

DP
type: SiteQuality
SIO_000300: 1.815259e6

GenotypeQuality
all individuals: 6568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23013
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
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variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4439
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46367
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.211240310077519e-4
allele num: 8256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9005
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.21e-1

QD
type: SiteQuality
SIO_000300: 1.45e1

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

DP
type: SiteQuality
SIO_000300: 1.820105e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

GenotypeQuality
all individuals: 23355
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
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variant carriers: 0

GenotypeQuality
all individuals: 6608
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3582
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variant carriers: 0

GenotypeQuality
all individuals: 536
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variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.467468632777131e-5
allele num: 46386
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.405989836739107e-4
allele num: 9249
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6607
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.534034311012728e-4
allele num: 9035
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.822986e6

MQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

QD
type: SiteQuality
SIO_000300: 1.472e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 1.119e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

GenotypeQuality
all individuals: 3591
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6631
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variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2485
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8265
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.105583195135434e-4
allele num: 9045
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4443
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.11e-1

QD
type: SiteQuality
SIO_000300: 2.456e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.823948e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1983
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variant carriers: 0

GenotypeQuality
all individuals: 2947
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variant carriers: 0

GenotypeQuality
all individuals: 12386
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9255
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4451
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46461
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8285
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.094810597766586e-4
allele num: 9134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 1.0568e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.799e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.59e1

DP
type: SiteQuality
SIO_000300: 1.831521e6

GenotypeQuality
all individuals: 480
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2978
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46495
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.204529029149603e-4
allele num: 8302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4461
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9181
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.093e0

DP
type: SiteQuality
SIO_000300: 1.834786e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 6.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.123e0

FS
type: SiteQuality
SIO_000300: 3.941e0

MQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

QD
type: SiteQuality
SIO_000300: 1.497e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

GenotypeQuality
all individuals: 23744
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12553
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9261
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46551
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8319
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.087074682030656e-4
allele num: 9199
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.972e0

DP
type: SiteQuality
SIO_000300: 1.84946e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.052e0

QD
type: SiteQuality
SIO_000300: 1.482e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.099e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12560
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.146337275439463e-5
allele num: 46591
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.084481075805227e-4
allele num: 9221
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.854589e6

VQSLOD
type: SiteQuality
SIO_000300: -3.309e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.273e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.412e0

QD
type: SiteQuality
SIO_000300: 2.379e1

GenotypeQuality
all individuals: 12561
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6847
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variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9225
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.145738563213458e-5
allele num: 46604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8343
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.17e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.854411e6

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
all individuals: 169
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 6848
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.437491953135059e-5
allele num: 46602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9265
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9213
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8347
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.478e1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.208e0

FS
type: SiteQuality
SIO_000300: 8.680999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

DP
type: SiteQuality
SIO_000300: 1.855274e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 24125
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12566
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variant carriers: 1

GenotypeQuality
all individuals: 2036
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.198035222235534e-4
allele num: 8347
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9211
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46635
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4499
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.681e0

QD
type: SiteQuality
SIO_000300: 3.318e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.856765e6

MQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.802e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.099e0

GenotypeQuality
all individuals: 3097
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
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variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8349
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9209
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.144312211858046e-5
allele num: 46635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4500
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.342e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.72e-1

FS
type: SiteQuality
SIO_000300: 1.0747e1

QD
type: SiteQuality
SIO_000300: 1.2e1

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

DP
type: SiteQuality
SIO_000300: 1.856911e6

VQSLOD
type: SiteQuality
SIO_000300: -1.517e0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8353
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9271
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.144128304637749e-5
allele num: 46639
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9180
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.408e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

QD
type: SiteQuality
SIO_000300: 1.793e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

DP
type: SiteQuality
SIO_000300: 1.855907e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.949e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3782
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.510802235987309e-4
allele num: 6619
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46639
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8353
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9271
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.855907e6

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

FS
type: SiteQuality
SIO_000300: 2.408e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.949e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

QD
type: SiteQuality
SIO_000300: 1.793e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 468
bin: 2.75e1
variant carriers: 1

South Asian
type: Population
allele count: 21
allele frequency: 2.316091320172053e-3
allele num: 9067
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.434316353887399e-5
allele num: 46625
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.12e0

DP
type: SiteQuality
SIO_000300: 1.851766e6

VQSLOD
type: SiteQuality
SIO_000300: -7.534999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.73e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

QD
type: SiteQuality
SIO_000300: 2.148e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 23084
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8349
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46617
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.41e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 9.196999999999999e0

DP
type: SiteQuality
SIO_000300: 1.849252e6

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-2

QD
type: SiteQuality
SIO_000300: 1.318e1

GenotypeQuality
all individuals: 6860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23084
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8349
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.290280369822168e-5
allele num: 46617
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.223210315695865e-4
allele num: 8996
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

FS
type: SiteQuality
SIO_000300: 9.196999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

QD
type: SiteQuality
SIO_000300: 1.318e1

DP
type: SiteQuality
SIO_000300: 1.849252e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.41e-2

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12577
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2036
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23209
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8351
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4513
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.14449615062941e-5
allele num: 46631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9019
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.511030522816561e-4
allele num: 6618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.137e0

DP
type: SiteQuality
SIO_000300: 1.8491e6

MQRankSum
type: SiteQuality
SIO_000300: -6.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.153e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.46e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.873e1

GenotypeQuality
all individuals: 470
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6849
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12579
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2962
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46609
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.587216448765225e-4
allele num: 8949
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9277
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.863e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.449e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-2

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.89e-1

DP
type: SiteQuality
SIO_000300: 1.848151e6

QD
type: SiteQuality
SIO_000300: 3.121e1

GenotypeQuality
all individuals: 2461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12578
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.511030522816561e-4
allele num: 6618
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.115075825156111e-4
allele num: 8968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.197461381870435e-4
allele num: 8351
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.288900325956424e-5
allele num: 46632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.847801e6

VQSLOD
type: SiteQuality
SIO_000300: -3.289e-1

FS
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

QD
type: SiteQuality
SIO_000300: 2.323e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

GenotypeQuality
all individuals: 556
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12577
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6818
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3802
bin: 7.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.135976371691469e-4
allele num: 8803
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46611
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.002e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

DP
type: SiteQuality
SIO_000300: 1.84137e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.892e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.059e0

GenotypeQuality
all individuals: 2524
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2962
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22583
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8353
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.437353818423707e-5
allele num: 46603
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8726
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.232410300614158e-4
allele num: 9281
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 1.84002e6

FS
type: SiteQuality
SIO_000300: 1.752e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.06e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 1.66e1

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2961
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46599
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.154467790348649e-4
allele num: 8662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.83785e6

VQSLOD
type: SiteQuality
SIO_000300: -3.73e-1

QD
type: SiteQuality
SIO_000300: 3.226e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
all individuals: 219
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3800
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8611
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.198035222235534e-4
allele num: 8347
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46589
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

DP
type: SiteQuality
SIO_000300: 1.837635e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.204e1

GenotypeQuality
all individuals: 2566
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1536
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12579
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8341
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46579
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8585
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 1.051e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e-1

FS
type: SiteQuality
SIO_000300: 1.323e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.752e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.837089e6

GenotypeQuality
all individuals: 3794
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12580
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.197891710589363e-4
allele num: 8348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8587
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46583
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.062e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e0

DP
type: SiteQuality
SIO_000300: 1.836261e6

GenotypeQuality
all individuals: 213
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6775
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variant carriers: 0

GenotypeQuality
all individuals: 2959
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variant carriers: 0

GenotypeQuality
all individuals: 22525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3073
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.330730684069456e-4
allele num: 8581
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46579
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.836782e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.089e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.196e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e0

FS
type: SiteQuality
SIO_000300: 4.396e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.339e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 218
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6763
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8351
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46571
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.167269756040621e-4
allele num: 8567
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.836111e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.187e1

VQSLOD
type: SiteQuality
SIO_000300: 7.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12582
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.147074610842727e-5
allele num: 46575
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8351
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.5e-1

DP
type: SiteQuality
SIO_000300: 1.835842e6

MQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.315e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.354e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.447e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

GenotypeQuality
all individuals: 655
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3794
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.14712071112638e-5
allele num: 46574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8351
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.835579e6

QD
type: SiteQuality
SIO_000300: 2.731e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.191e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46575
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.197604790419162e-4
allele num: 8350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.132e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.14e-1

FS
type: SiteQuality
SIO_000300: 2.557e0

VQSLOD
type: SiteQuality
SIO_000300: -7.732e-1

MQ
type: SiteQuality
SIO_000300: 5.783e1

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

DP
type: SiteQuality
SIO_000300: 1.835181e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.42e-1

QD
type: SiteQuality
SIO_000300: 1.437e1

GenotypeQuality
all individuals: 564
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22467
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2959
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8349
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8543
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46573
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.077354018530489e-4
allele num: 9282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.043e0

QD
type: SiteQuality
SIO_000300: 1.205e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.474e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 1.835211e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.822e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e0

GenotypeQuality
all individuals: 2955
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6747
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46571
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.539951573849879e-4
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8353
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.371e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 1.835427e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.777e1

GenotypeQuality
all individuals: 162
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2955
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6747
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8353
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46571
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.170411985018727e-4
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.371e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

DP
type: SiteQuality
SIO_000300: 1.835427e6

QD
type: SiteQuality
SIO_000300: 1.777e1

GenotypeQuality
all individuals: 1535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6748
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3066
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.14762794493482e-5
allele num: 46563
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8539
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.835424e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.16e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: -7.171e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.678e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.329e1

FS
type: SiteQuality
SIO_000300: 7.14e0

GenotypeQuality
all individuals: 2035
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12582
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3058
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8539
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.392344497607656e-4
allele num: 8360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46573
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.14e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.81e-1

QD
type: SiteQuality
SIO_000300: 1.373e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e0

DP
type: SiteQuality
SIO_000300: 1.835621e6

GenotypeQuality
all individuals: 12582
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22329
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3786
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.197461381870435e-4
allele num: 8351
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.149844136300118e-5
allele num: 46515
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.585e1

DP
type: SiteQuality
SIO_000300: 1.835563e6

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
all individuals: 22451
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3785
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.16795141322121e-4
allele num: 8562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8351
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-2

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 1.746e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.835843e6

VQSLOD
type: SiteQuality
SIO_000300: -2.089e-1

QD
type: SiteQuality
SIO_000300: 2.217e1

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6742
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8351
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.148043132706105e-5
allele num: 46554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.38e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: -2.089e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 1.746e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

DP
type: SiteQuality
SIO_000300: 1.835843e6

QD
type: SiteQuality
SIO_000300: 2.217e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-2

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3787
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6728
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9279
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.29774798005845e-5
allele num: 46536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8561
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.171e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.03e-1

QD
type: SiteQuality
SIO_000300: 1.921e1

DP
type: SiteQuality
SIO_000300: 1.835857e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

FS
type: SiteQuality
SIO_000300: 1.624e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

GenotypeQuality
all individuals: 417
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12584
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2609
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.44676050284732e-5
allele num: 46535
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.310809354456299e-4
allele num: 9279
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8337
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.746e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

MQ
type: SiteQuality
SIO_000300: 5.963e1