X-7812094-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007812094
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007812094
    reference: chr 0
allele count: 1
allele frequency: 1.471843631332607e-5
allele num: 67942
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182583
  ensembl protein: ENSP00000370447
  ensembl transcript: ENST00000381059
  gene symbol: VCX
  hgvsc: ENST00000381059.3:c.*37T>G
  variant of: http://identifiers.org/hgnc/12667
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.738975623116954e-5
  allele num: 36510
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7330
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 459
  num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-7812101-A-AGGGCTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007812101
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007812107
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 67696
alternate allele: AGGGCTG
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182583
  ensembl protein: ENSP00000370447
  ensembl transcript: ENST00000381059
  gene symbol: VCX
  hgvsc: ENST00000381059.3:c.*46_*47insGCTGGG
  variant of: http://identifiers.org/hgnc/12667
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3163
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7468
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7355
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

X-7812103-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007812103
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007812103
    reference: chr 0
allele count: 2
allele frequency: 2.955475757710097e-5
allele num: 67671
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182583
  ensembl protein: ENSP00000370447
  ensembl transcript: ENST00000381059
  gene symbol: VCX
  hgvsc: ENST00000381059.3:c.*46G>A
  variant of: http://identifiers.org/hgnc/12667
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 1000
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1303
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7175
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.755352271787948e-5
  allele num: 36293
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5750
  num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-7868681-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868681
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868681
    reference: chr 0
allele count: 58
allele frequency: 1.808543810414718e-3
allele num: 32070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.*46G>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.*46G>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.*46G>T
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 17
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 88
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genotype quality: GenotypeQuality
  all individuals: 756
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-7868691-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868691
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868691
    reference: chr 0
allele count: 2
allele frequency: 6.147226064238513e-5
allele num: 32535
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.*36G>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.*36G>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.*36G>T
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

X-7868697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868697
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868697
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 32967
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.*30G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.*30G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.*30G>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

X-7868697-CGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868697
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868695
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 32967
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.*28_*29delAC
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.*28_*29delAC
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.*28_*29delAC
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: CGT
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-7868700-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868700
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868700
    reference: chr 0
allele count: 1
allele frequency: 2.987214720994145e-5
allele num: 33476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.*27C>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.*27C>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.*27C>T
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

X-7868717-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868717
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868717
    reference: chr 0
allele count: 1
allele frequency: 2.725315455263947e-5
allele num: 36693
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.*10A>G
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.*10A>G
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.*10A>G
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 25925
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-7868720-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868720
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868720
    reference: chr 0
allele count: 1
allele frequency: 2.680462111668051e-5
allele num: 37307
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.*7T>G
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.*7T>G
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.*7T>G
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2568
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-7868735-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868735
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868735
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 43407
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.754T>G
  hgvsp: ENSP00000370430.4:p.Phe252Val
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.493T>G
  hgvsp: ENSP00000443157.1:p.Phe165Val
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.754T>G
  hgvsp: ENSP00000415245.1:p.Phe252Val
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 285
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  variant carriers: 0
hgvs: p.Phe252Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

X-7868736-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868736
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868736
    reference: chr 0
allele count: 1
allele frequency: 2.285505325227408e-5
allele num: 43754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.492G>T
  hgvsp: ENSP00000443157.1:p.Trp164Cys
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.753G>T
  hgvsp: ENSP00000370430.4:p.Trp251Cys
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.753G>T
  hgvsp: ENSP00000415245.1:p.Trp251Cys
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Trp251Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

X-7868787-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868787
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868787
    reference: chr 0
allele count: 1
allele frequency: 1.519987840097279e-5
allele num: 65790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.702G>T
  hgvsp: ENSP00000415245.1:p.Leu234Phe
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.702G>T
  hgvsp: ENSP00000370430.4:p.Leu234Phe
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.441G>T
  hgvsp: ENSP00000443157.1:p.Leu147Phe
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu234Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD

X-7868793-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868793
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868793
    reference: chr 0
allele count: 2
allele frequency: 2.930918256689821e-5
allele num: 68238
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.696A>T
  hgvsp: ENSP00000370430.4:p.Glu232Asp
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.435A>T
  hgvsp: ENSP00000443157.1:p.Glu145Asp
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.696A>T
  hgvsp: ENSP00000415245.1:p.Glu232Asp
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu232Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

X-7868795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868795
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868795
    reference: chr 0
allele count: 1
allele frequency: 1.456812784989001e-5
allele num: 68643
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.433G>A
  hgvsp: ENSP00000443157.1:p.Glu145Lys
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.694G>A
  hgvsp: ENSP00000415245.1:p.Glu232Lys
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.694G>A
  hgvsp: ENSP00000370430.4:p.Glu232Lys
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu232Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

X-7868796-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868796
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868796
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 69033
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.693G>T
  hgvsp: ENSP00000370430.4:p.Met231Ile
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.432G>T
  hgvsp: ENSP00000443157.1:p.Met144Ile
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.693G>T
  hgvsp: ENSP00000415245.1:p.Met231Ile
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 316
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met231Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

X-7868810-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868810
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868810
    reference: chr 0
allele count: 1
allele frequency: 1.364721937905152e-5
allele num: 73275
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.679A>G
  hgvsp: ENSP00000370430.4:p.Ser227Gly
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.418A>G
  hgvsp: ENSP00000443157.1:p.Ser140Gly
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.679A>G
  hgvsp: ENSP00000415245.1:p.Ser227Gly
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 921
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34854
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser227Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-7868813-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868813
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868813
    reference: chr 0
allele count: 2
allele frequency: 2.707898941211514e-5
allele num: 73858
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.676C>G
  hgvsp: ENSP00000415245.1:p.Pro226Ala
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.415C>G
  hgvsp: ENSP00000443157.1:p.Pro139Ala
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.676C>G
  hgvsp: ENSP00000370430.4:p.Pro226Ala
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
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genotype depth: GenotypeDepth
  all individuals: 12473
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6675
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31884
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 34468
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2977
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 13496
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 585
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 183
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro226Ala
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum

X-7868821-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868821
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868821
    reference: chr 0
allele count: 1
allele frequency: 1.328391716149258e-5
allele num: 75279
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.668T>C
  hgvsp: ENSP00000370430.4:p.Leu223Pro
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.407T>C
  hgvsp: ENSP00000443157.1:p.Leu136Pro
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.668T>C
  hgvsp: ENSP00000415245.1:p.Leu223Pro
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32117
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12344
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 488
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 867
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu223Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-7868845-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868845
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868845
    reference: chr 0
allele count: 1
allele frequency: 1.298498935230873e-5
allele num: 77012
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.644A>G
  hgvsp: ENSP00000370430.4:p.Asn215Ser
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.383A>G
  hgvsp: ENSP00000443157.1:p.Asn128Ser
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.644A>G
  hgvsp: ENSP00000415245.1:p.Asn215Ser
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn215Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-7868848-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868848
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868848
    reference: chr 0
allele count: 1
allele frequency: 1.301795175547079e-5
allele num: 76817
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.380C>G
  hgvsp: ENSP00000443157.1:p.Ala127Gly
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.641C>G
  hgvsp: ENSP00000370430.4:p.Ala214Gly
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.641C>G
  hgvsp: ENSP00000415245.1:p.Ala214Gly
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala214Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-7868871-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868871
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868871
    reference: chr 0
allele count: 1
allele frequency: 1.328815361105574e-5
allele num: 75255
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.370-13C>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.631-13C>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.631-13C>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum

X-7868890-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868890
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868890
    reference: chr 0
allele count: 1
allele frequency: 1.360544217687075e-5
allele num: 73500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.631-32C>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.370-32C>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.631-32C>T
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-7868908-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007868908
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007868908
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 68701
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.631-50T>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.370-50T>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.631-50T>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-7869987-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007869987
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007869987
    reference: chr 0
allele count: 1
allele frequency: 1.141148680261551e-5
allele num: 87631
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.630+43C>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.630+43C>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.369+43C>T
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9618
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum

X-7869994-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007869994
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007869994
    reference: chr 0
allele count: 2
allele frequency: 2.281698496360691e-5
allele num: 87654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.630+36T>C
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.630+36T>C
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.369+36T>C
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9638
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 6245
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

X-7869997-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007869997
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007869997
    reference: chr 0
allele count: 1
allele frequency: 1.140719109326519e-5
allele num: 87664
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.630+33T>C
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.369+33T>C
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.630+33T>C
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 983
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31847
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD

X-7870000-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870000
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870000
    reference: chr 0
allele count: 1
allele frequency: 1.140680073459797e-5
allele num: 87667
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.369+30G>C
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.630+30G>C
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.630+30G>C
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 358
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9656
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD

X-7870012-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870012
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870012
    reference: chr 0
allele count: 1
allele frequency: 1.140159850411028e-5
allele num: 87707
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.369+18G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.630+18G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.630+18G>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3972
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

X-7870025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870025
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870025
    reference: chr 0
allele count: 1
allele frequency: 1.13986093696569e-5
allele num: 87730
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.630+5G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.630+5G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.369+5G>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3975
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6243
  bin: 9.75e1
  variant carriers: 1
hgvs: c.630+5G>A
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

X-7870029-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870029
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870029
    reference: chr 0
allele count: 1
allele frequency: 1.139769994415127e-5
allele num: 87737
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.369+1G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.630+1G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.630+1G>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 3975
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genotype quality: GenotypeQuality
  all individuals: 9715
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 6241
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genotype quality: GenotypeQuality
  all individuals: 13
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 2442
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genotype quality: GenotypeQuality
  all individuals: 32640
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 7.25e1
  variant carriers: 0
hgvs: c.630+1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ

X-7870036-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870036
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870036
    reference: chr 0
allele count: 1
allele frequency: 1.139705044334526e-5
allele num: 87742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.363T>C
  hgvsp: ENST00000537427.1:c.363T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.624T>C
  hgvsp: ENST00000381042.4:c.624T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.624T>C
  hgvsp: ENST00000444736.1:c.624T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23780
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11562
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13297
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3978
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 32662
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6241
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genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9721
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp208Asp
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-7870071-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870071
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870071
    reference: chr 0
allele count: 1
allele frequency: 1.139653089599526e-5
allele num: 87746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.589C>A
  hgvsp: ENSP00000415245.1:p.Gln197Lys
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.589C>A
  hgvsp: ENSP00000370430.4:p.Gln197Lys
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.328C>A
  hgvsp: ENSP00000443157.1:p.Gln110Lys
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13231
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2371
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 135
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1442
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 980
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2442
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3977
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genotype quality: GenotypeQuality
  all individuals: 9734
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln197Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

X-7870080-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870080
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870080
    reference: chr 0
allele count: 4
allele frequency: 4.558768220826732e-5
allele num: 87743
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.580G>A
  hgvsp: ENSP00000415245.1:p.Asp194Asn
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.319G>A
  hgvsp: ENSP00000443157.1:p.Asp107Asn
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.580G>A
  hgvsp: ENSP00000370430.4:p.Asp194Asn
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11576
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
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genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 3
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3977
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp194Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-7870084-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870084
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870084
    reference: chr 0
allele count: 1
allele frequency: 1.139705044334526e-5
allele num: 87742
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.576G>T
  hgvsp: ENST00000381042.4:c.576G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.315G>T
  hgvsp: ENST00000537427.1:c.315G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.576G>T
  hgvsp: ENST00000444736.1:c.576G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13192
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 18
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro192Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

X-7870084-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870084
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870084
    reference: chr 0
allele count: 45
allele frequency: 5.128672699505368e-4
allele num: 87742
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.576G>A
  hgvsp: ENST00000381042.4:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.576G>A
  hgvsp: ENST00000444736.1:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.315G>A
  hgvsp: ENST00000537427.1:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13192
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3165
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro192Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

X-7870085-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870085
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870085
    reference: chr 0
allele count: 16
allele frequency: 1.823631991064203e-4
allele num: 87737
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.314C>T
  hgvsp: ENSP00000443157.1:p.Pro105Leu
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.575C>T
  hgvsp: ENSP00000415245.1:p.Pro192Leu
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.575C>T
  hgvsp: ENSP00000370430.4:p.Pro192Leu
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
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genotype depth: GenotypeDepth
  all individuals: 471
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 11
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 32645
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  variant carriers: 0
hgvs: p.Pro192Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

X-7870101-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870101
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870101
    reference: chr 0
allele count: 2
allele frequency: 2.279695888568465e-5
allele num: 87731
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.298C>T
  hgvsp: ENSP00000443157.1:p.Arg100Ter
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.559C>T
  hgvsp: ENSP00000370430.4:p.Arg187Ter
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.559C>T
  hgvsp: ENSP00000406698.1:p.Arg187Ter
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.559C>T
  hgvsp: ENSP00000415245.1:p.Arg187Ter
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32593
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg187Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-7870104-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870104
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870104
    reference: chr 0
allele count: 2
allele frequency: 2.279799833574612e-5
allele num: 87727
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.556G>A
  hgvsp: ENSP00000370430.4:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.556G>A
  hgvsp: ENSP00000415245.1:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.556G>A
  hgvsp: ENSP00000406698.1:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.295G>A
  hgvsp: ENSP00000443157.1:p.Gly99Arg
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11582
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 613
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 353
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 184
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genotype depth: GenotypeDepth
  all individuals: 471
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
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genotype depth: GenotypeDepth
  all individuals: 824
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9713
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
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genotype quality: GenotypeQuality
  all individuals: 18
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3160
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly186Arg
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS

X-7870112-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870112
    reference: chr 0
allele count: 2
allele frequency: 2.280527714113046e-5
allele num: 87699
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.548C>A
  hgvsp: ENSP00000406698.1:p.Pro183His
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.287C>A
  hgvsp: ENSP00000443157.1:p.Pro96His
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.548C>A
  hgvsp: ENSP00000370430.4:p.Pro183His
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.548C>A
  hgvsp: ENSP00000415245.1:p.Pro183His
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2367
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23897
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 261
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 978
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro183His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

X-7870115-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870115
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870115
    reference: chr 0
allele count: 4
allele frequency: 4.56141951375268e-5
allele num: 87692
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.545C>A
  hgvsp: ENSP00000370430.4:p.Ser182Tyr
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.545C>A
  hgvsp: ENSP00000415245.1:p.Ser182Tyr
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.284C>A
  hgvsp: ENSP00000443157.1:p.Ser95Tyr
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.545C>A
  hgvsp: ENSP00000406698.1:p.Ser182Tyr
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2368
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3155
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  variant carriers: 0
hgvs: p.Ser182Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP

X-7870122-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870122
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870122
    reference: chr 0
allele count: 1
allele frequency: 1.140888295626975e-5
allele num: 87651
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.538A>G
  hgvsp: ENSP00000370430.4:p.Thr180Ala
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.277A>G
  hgvsp: ENSP00000443157.1:p.Thr93Ala
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.538A>G
  hgvsp: ENSP00000406698.1:p.Thr180Ala
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.538A>G
  hgvsp: ENSP00000415245.1:p.Thr180Ala
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 90
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6202
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3945
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9670
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr180Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

X-7870127-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870127
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870127
    reference: chr 0
allele count: 8
allele frequency: 9.130856588483708e-5
allele num: 87615
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.533C>A
  hgvsp: ENSP00000406698.1:p.Thr178Lys
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.272C>A
  hgvsp: ENSP00000443157.1:p.Thr91Lys
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.533C>A
  hgvsp: ENSP00000370430.4:p.Thr178Lys
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.533C>A
  hgvsp: ENSP00000415245.1:p.Thr178Lys
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
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genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 282
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
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genotype quality: GenotypeQuality
  all individuals: 6201
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr178Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-7870130-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870130
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870130
    reference: chr 0
allele count: 1
allele frequency: 1.14185231282186e-5
allele num: 87577
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.269G>A
  hgvsp: ENSP00000443157.1:p.Arg90Gln
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.530G>A
  hgvsp: ENSP00000370430.4:p.Arg177Gln
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.530G>A
  hgvsp: ENSP00000415245.1:p.Arg177Gln
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.530G>A
  hgvsp: ENSP00000406698.1:p.Arg177Gln
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9621
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
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  variant carriers: 0
hgvs: p.Arg177Gln
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-7870137-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870137
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870137
    reference: chr 0
allele count: 1
allele frequency: 1.142817960527068e-5
allele num: 87503
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.523G>T
  hgvsp: ENSP00000406698.1:p.Val175Phe
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.523G>T
  hgvsp: ENSP00000415245.1:p.Val175Phe
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.523G>T
  hgvsp: ENSP00000370430.4:p.Val175Phe
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.262G>T
  hgvsp: ENSP00000443157.1:p.Val88Phe
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 497
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val175Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

X-7870137-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870137
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870137
    reference: chr 0
allele count: 1
allele frequency: 1.142817960527068e-5
allele num: 87503
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.523G>C
  hgvsp: ENSP00000415245.1:p.Val175Leu
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.523G>C
  hgvsp: ENSP00000406698.1:p.Val175Leu
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.262G>C
  hgvsp: ENSP00000443157.1:p.Val88Leu
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.523G>C
  hgvsp: ENSP00000370430.4:p.Val175Leu
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6190
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3096
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9566
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val175Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

X-7870137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870137
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870137
    reference: chr 0
allele count: 15
allele frequency: 1.714226940790601e-4
allele num: 87503
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.262G>A
  hgvsp: ENSP00000443157.1:p.Val88Ile
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.523G>A
  hgvsp: ENSP00000406698.1:p.Val175Ile
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.523G>A
  hgvsp: ENSP00000415245.1:p.Val175Ile
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.523G>A
  hgvsp: ENSP00000370430.4:p.Val175Ile
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
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genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6190
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 9566
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val175Ile
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-7870138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870138
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870138
    reference: chr 0
allele count: 1
allele frequency: 1.143196835631159e-5
allele num: 87474
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.522C>T
  hgvsp: ENST00000381042.4:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.261C>T
  hgvsp: ENST00000537427.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.522C>T
  hgvsp: ENST00000442940.1:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.522C>T
  hgvsp: ENST00000444736.1:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3089
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31574
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro174Pro
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

X-7870138-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870138
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870138
    reference: chr 0
allele count: 1
allele frequency: 1.143196835631159e-5
allele num: 87474
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.522C>G
  hgvsp: ENST00000442940.1:c.522C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.522C>G
  hgvsp: ENST00000444736.1:c.522C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.522C>G
  hgvsp: ENST00000381042.4:c.522C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.261C>G
  hgvsp: ENST00000537427.1:c.261C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31574
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 9531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3089
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro174Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

X-7870141-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870141
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870141
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87468
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.519G>T
  hgvsp: ENST00000381042.4:c.519G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.519G>T
  hgvsp: ENST00000444736.1:c.519G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.519G>T
  hgvsp: ENST00000442940.1:c.519G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.258G>T
  hgvsp: ENST00000537427.1:c.258G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 31802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6175
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu173Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

X-7870154-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870154
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870154
    reference: chr 0
allele count: 2
allele frequency: 2.296395806781257e-5
allele num: 87093
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.506C>T
  hgvsp: ENSP00000406698.1:p.Ala169Val
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.245C>T
  hgvsp: ENSP00000443157.1:p.Ala82Val
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.506C>T
  hgvsp: ENSP00000415245.1:p.Ala169Val
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.506C>T
  hgvsp: ENSP00000370430.4:p.Ala169Val
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12253
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30503
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 367
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genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6169
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ala169Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-7870155-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870155
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870155
    reference: chr 0
allele count: 2
allele frequency: 2.297081557880712e-5
allele num: 87067
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.505G>A
  hgvsp: ENSP00000415245.1:p.Ala169Thr
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.244G>A
  hgvsp: ENSP00000443157.1:p.Ala82Thr
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.505G>A
  hgvsp: ENSP00000406698.1:p.Ala169Thr
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.505G>A
  hgvsp: ENSP00000370430.4:p.Ala169Thr
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22959
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30617
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3787
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6165
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala169Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-7870156-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870156
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870156
    reference: chr 0
allele count: 6
allele frequency: 6.893699158968702e-5
allele num: 87036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.504C>T
  hgvsp: ENST00000442940.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.504C>T
  hgvsp: ENST00000381042.4:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.504C>T
  hgvsp: ENST00000444736.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.243C>T
  hgvsp: ENST00000537427.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 612
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 284
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3779
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genotype quality: GenotypeQuality
  all individuals: 243
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30674
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn168Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-7870157-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870157
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870157
    reference: chr 0
allele count: 1
allele frequency: 1.149240352127244e-5
allele num: 87014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.503A>G
  hgvsp: ENSP00000415245.1:p.Asn168Ser
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.503A>G
  hgvsp: ENSP00000370430.4:p.Asn168Ser
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.242A>G
  hgvsp: ENSP00000443157.1:p.Asn81Ser
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.503A>G
  hgvsp: ENSP00000406698.1:p.Asn168Ser
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn168Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-7870165-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870165
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870165
    reference: chr 0
allele count: 18
allele frequency: 2.079554513210948e-4
allele num: 86557
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.234C>T
  hgvsp: ENST00000537427.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.495C>T
  hgvsp: ENST00000442940.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.495C>T
  hgvsp: ENST00000381042.4:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.495C>T
  hgvsp: ENST00000444736.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21935
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 466
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11910
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10805
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 11
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genotype quality: GenotypeQuality
  all individuals: 169
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genotype quality: GenotypeQuality
  all individuals: 1401
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly165Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

X-7870170-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870170
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870170
    reference: chr 0
allele count: 2
allele frequency: 2.319378406587035e-5
allele num: 86230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.229G>A
  hgvsp: ENSP00000443157.1:p.Gly77Arg
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.490G>A
  hgvsp: ENSP00000406698.1:p.Gly164Arg
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.490G>A
  hgvsp: ENSP00000370430.4:p.Gly164Arg
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.490G>A
  hgvsp: ENSP00000415245.1:p.Gly164Arg
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29
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genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly164Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

X-7870171-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870171
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870171
    reference: chr 0
allele count: 1
allele frequency: 1.159958241503306e-5
allele num: 86210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.228C>T
  hgvsp: ENST00000537427.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.489C>T
  hgvsp: ENST00000444736.1:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.489C>T
  hgvsp: ENST00000442940.1:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.489C>T
  hgvsp: ENST00000381042.4:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8626
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 723
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genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp163Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-7870179-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870179
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870179
    reference: chr 0
allele count: 13
allele frequency: 1.519011006987451e-4
allele num: 85582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.481T>A
  hgvsp: ENSP00000406698.1:p.Trp161Arg
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.481T>A
  hgvsp: ENSP00000370430.4:p.Trp161Arg
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.220T>A
  hgvsp: ENSP00000443157.1:p.Trp74Arg
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.481T>A
  hgvsp: ENSP00000415245.1:p.Trp161Arg
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 464
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
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  variant carriers: 1
hgvs: p.Trp161Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

X-7870191-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870191
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870191
    reference: chr 0
allele count: 1
allele frequency: 1.177689843602789e-5
allele num: 84912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.217-9T>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.478-9T>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.478-9T>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.478-9T>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3368
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

X-7870192-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870192
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870192
    reference: chr 0
allele count: 1
allele frequency: 1.178772661904425e-5
allele num: 84834
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.478-10C>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.478-10C>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.478-10C>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.217-10C>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7944
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genotype quality: GenotypeQuality
  all individuals: 6104
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-7870203-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870203
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870203
    reference: chr 0
allele count: 3
allele frequency: 3.601181187429477e-5
allele num: 83306
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.478-21G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.478-21G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.217-21G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.478-21G>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-7870204-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870204
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870204
    reference: chr 0
allele count: 3
allele frequency: 3.601397342168761e-5
allele num: 83301
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.478-22C>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.478-22C>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.478-22C>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.217-22C>T
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

X-7870224-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870224
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870224
    reference: chr 0
allele count: 1
allele frequency: 1.226737981034631e-5
allele num: 81517
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.478-42G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.478-42G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.217-42G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.478-42G>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

X-7870228-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007870228
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007870228
    reference: chr 0
allele count: 1
allele frequency: 1.234491698043331e-5
allele num: 81005
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.478-46G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.478-46G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.478-46G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.217-46G>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-7880022-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880022
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880022
    reference: chr 0
allele count: 4
allele frequency: 4.616059270201029e-5
allele num: 86654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.477+47T>C
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.477+47T>C
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.477+47T>C
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.216+47T>C
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12069
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-7880024-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880024
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880023
    reference: chr 0
allele count: 1
allele frequency: 1.153921602566322e-5
allele num: 86661
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.216+44delA
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.477+44delA
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.477+44delA
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.477+44delA
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5652
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: AT
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

X-7880035-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880035
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880035
    reference: chr 0
allele count: 4
allele frequency: 4.605429801736247e-5
allele num: 86854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.477+34C>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.477+34C>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.216+34C>T
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.477+34C>T
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2113
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum

X-7880049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880049
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880049
    reference: chr 0
allele count: 1
allele frequency: 1.146828445932773e-5
allele num: 87197
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.216+20G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.477+20G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.477+20G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.477+20G>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7440
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

X-7880051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880051
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880051
    reference: chr 0
allele count: 2
allele frequency: 2.292999472610121e-5
allele num: 87222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.477+18G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.477+18G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.216+18G>A
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.477+18G>A
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-7880057-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880057
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880057
    reference: chr 0
allele count: 1
allele frequency: 1.144898333028027e-5
allele num: 87344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.216+12A>G
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.477+12A>G
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.477+12A>G
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.477+12A>G
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

X-7880072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880072
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880072
    reference: chr 0
allele count: 1
allele frequency: 1.142831021005234e-5
allele num: 87502
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.474G>A
  hgvsp: ENST00000381042.4:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.213G>A
  hgvsp: ENST00000537427.1:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.474G>A
  hgvsp: ENST00000444736.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.474G>A
  hgvsp: ENST00000442940.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7492
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18634
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 67
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genotype depth: GenotypeDepth
  all individuals: 109
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genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
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genotype quality: GenotypeQuality
  all individuals: 31
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genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 249
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
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genotype quality: GenotypeQuality
  all individuals: 42
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genotype quality: GenotypeQuality
  all individuals: 2175
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28512
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 6080
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14039
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly158Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-7880084-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880084
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880084
    reference: chr 0
allele count: 3
allele frequency: 3.426691643441312e-5
allele num: 87548
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.462G>A
  hgvsp: ENST00000442940.1:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.201G>A
  hgvsp: ENST00000537427.1:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.462G>A
  hgvsp: ENST00000444736.1:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.462G>A
  hgvsp: ENST00000381042.4:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7507
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2184
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 28533
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6100
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14040
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Val154Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-7880085-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880085
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880085
    reference: chr 0
allele count: 1
allele frequency: 1.142165317007984e-5
allele num: 87553
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.200T>G
  hgvsp: ENSP00000443157.1:p.Val67Gly
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.461T>G
  hgvsp: ENSP00000406698.1:p.Val154Gly
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.461T>G
  hgvsp: ENSP00000415245.1:p.Val154Gly
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.461T>G
  hgvsp: ENSP00000370430.4:p.Val154Gly
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18627
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2680
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 38
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val154Gly
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff

X-7880094-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880094
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880094
    reference: chr 0
allele count: 1
allele frequency: 1.14200879346771e-5
allele num: 87565
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.452T>A
  hgvsp: ENSP00000406698.1:p.Leu151Gln
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.452T>A
  hgvsp: ENSP00000415245.1:p.Leu151Gln
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.452T>A
  hgvsp: ENSP00000370430.4:p.Leu151Gln
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.191T>A
  hgvsp: ENSP00000443157.1:p.Leu64Gln
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 210
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14037
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Leu151Gln
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

X-7880110-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880110
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880110
    reference: chr 0
allele count: 1
allele frequency: 1.142295786070845e-5
allele num: 87543
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.436C>A
  hgvsp: ENSP00000406698.1:p.Pro146Thr
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.175C>A
  hgvsp: ENSP00000443157.1:p.Pro59Thr
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.436C>A
  hgvsp: ENSP00000370430.4:p.Pro146Thr
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.436C>A
  hgvsp: ENSP00000415245.1:p.Pro146Thr
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3096
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6078
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28412
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14037
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro146Thr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQ

X-7880114-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880114
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880114
    reference: chr 0
allele count: 2
allele frequency: 2.284722063560968e-5
allele num: 87538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000406698
  ensembl transcript: ENST00000442940
  gene symbol: PNPLA4
  hgvsc: ENST00000442940.1:c.432T>C
  hgvsp: ENST00000442940.1:c.432T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000370430
  ensembl transcript: ENST00000381042
  gene symbol: PNPLA4
  hgvsc: ENST00000381042.4:c.432T>C
  hgvsp: ENST00000381042.4:c.432T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.171T>C
  hgvsp: ENST00000537427.1:c.171T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000415245
  ensembl transcript: ENST00000444736
  gene symbol: PNPLA4
  hgvsc: ENST00000444736.1:c.432T>C
  hgvsp: ENST00000444736.1:c.432T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6081
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14037
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe144Phe
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-7880120-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007880120
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007880120
    reference: chr 0
allele count: 1
allele frequency: 1.143196835631159e-5
allele num: 87474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006757
  ensembl protein: ENSP00000443157
  ensembl transcript: ENST00000537427
  gene symbol: PNPLA4
  hgvsc: ENST00000537427.1:c.165C>A
  hgvsp: ENSP00000443157.1:p.Ser55Arg
  variant of: http://identifiers.org/hgnc/24887
canonical: true
consequence: missense
filter: PASS
hgvs: p.Ser142Arg
num of homozygotes: 0
reference allele: G

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3171
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.468e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.739e0

VQSLOD
type: SiteQuality
SIO_000300: -5.547e0

QD
type: SiteQuality
SIO_000300: 1.709e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

FS
type: SiteQuality
SIO_000300: 2.431e0

MQRankSum
type: SiteQuality
SIO_000300: -1.944e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 1.759805e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.617e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.017e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 1.760793e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 5.18e0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 455
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.359619306594154e-4
allele num: 7355
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7465
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.588e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

DP
type: SiteQuality
SIO_000300: 1.762456e6

VQSLOD
type: SiteQuality
SIO_000300: -1.217e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.607e0

FS
type: SiteQuality
SIO_000300: 3.448e1

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

MQ
type: SiteQuality
SIO_000300: 2.728e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 1025
bin: 4.75e1
variant carriers: 2

African
type: Population
allele count: 57
allele frequency: 1.235906331309627e-2
allele num: 4612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16117
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3033
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2643
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.866150759529951e-4
allele num: 3489
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.483e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.12e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.75066e5

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

GenotypeQuality
all individuals: 2965
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2765
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4669
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3545
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.302509907529723e-4
allele num: 3028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.128201985537444e-5
allele num: 16318
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.71e-2

QD
type: SiteQuality
SIO_000300: 3.034e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

DP
type: SiteQuality
SIO_000300: 6.96669e5

VQSLOD
type: SiteQuality
SIO_000300: 6.54e-1

GenotypeQuality
all individuals: 225
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2007
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 243
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2849
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.15772e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.778e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 243
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2849
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2007
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3076
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.778e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-2

DP
type: SiteQuality
SIO_000300: 7.15772e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 214
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2035
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.980503558399617e-5
allele num: 16721
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3648
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African
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East Asian
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South Asian
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Other
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VQSLOD
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ReadPosRankSum
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QD
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FS
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MQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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bin: 4.25e1
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East Asian
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South Asian
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European (Finnish)
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African
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Latino
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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DP
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 2.991325157044571e-4
allele num: 3343
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Latino
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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QD
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DP
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VQSLOD
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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allele frequency: 2.015316404675534e-4
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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Other
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ClippingRankSum
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.914007634700003e-5
allele num: 34317
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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QD
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 5.578644947142339e-5
allele num: 35851
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East Asian
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele frequency: 2.770390070921986e-5
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African
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South Asian
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Other
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allele frequency: 0.0e0
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Latino
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ClippingRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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FS
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VQSLOD
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MQ
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Latino
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South Asian
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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FS
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DP
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.561475409836066e-5
allele num: 39040
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European (Finnish)
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East Asian
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South Asian
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African
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Latino
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Other
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MQ
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FS
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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East Asian
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African
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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FS
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MQ
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BaseQRankSum
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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Latino
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African
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East Asian
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BaseQRankSum
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MQ
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InbreedingCoeff
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DP
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Other
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East Asian
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MQ
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FS
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VQSLOD
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DP
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InbreedingCoeff
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QD
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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African
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Other
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South Asian
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Latino
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East Asian
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European (Finnish)
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MQRankSum
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FS
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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East Asian
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Latino
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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QD
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DP
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BaseQRankSum
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GenotypeQuality
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variant carriers: 1

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East Asian
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Other
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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Other
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African
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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Latino
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South Asian
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Other
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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DP
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QD
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MQ
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BaseQRankSum
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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African
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Other
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MQRankSum
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InbreedingCoeff
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DP
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QD
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FS
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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Other
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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FS
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QD
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VQSLOD
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GenotypeQuality
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variant carriers: 0

South Asian
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East Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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QD
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FS
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Latino
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Other
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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FS
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DP
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QD
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BaseQRankSum
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MQ
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GenotypeQuality
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South Asian
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East Asian
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Latino
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Other
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European (Finnish)
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African
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European (Non-Finnish)
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VQSLOD
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FS
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MQ
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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Other
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Latino
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East Asian
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European (Finnish)
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ReadPosRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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MQ
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GenotypeQuality
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Latino
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African
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Other
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QD
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MQRankSum
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MQ
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FS
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DP
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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East Asian
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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DP
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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QD
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GenotypeQuality
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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Other
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East Asian
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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South Asian
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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BaseQRankSum
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DP
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MQRankSum
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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allele frequency: 1.579778830963665e-3
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.583e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.409e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.905981e6

VQSLOD
type: SiteQuality
SIO_000300: 1.63e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

FS
type: SiteQuality
SIO_000300: 1.115e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

GenotypeQuality
all individuals: 1441
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.524022083871726e-4
allele num: 8513
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.500989975198516e-4
allele num: 47981
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.879470460383324e-5
allele num: 10122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

DP
type: SiteQuality
SIO_000300: 1.903673e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.625e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.804e1

QD
type: SiteQuality
SIO_000300: 1.796e1

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 9718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 3160
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.349348055914484e-4
allele num: 8513
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.901621e6

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

QD
type: SiteQuality
SIO_000300: 2.16e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.629e-1

FS
type: SiteQuality
SIO_000300: 7.075e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.76e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.97667523225934e-4
allele num: 10118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.901566e6

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.316e-1

QD
type: SiteQuality
SIO_000300: 2.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10111
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.16988094989888e-5
allele num: 47963
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.48e-1

FS
type: SiteQuality
SIO_000300: 5.85e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

QD
type: SiteQuality
SIO_000300: 1.655e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-1

DP
type: SiteQuality
SIO_000300: 1.901014e6

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6206
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10111
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.170054836221096e-5
allele num: 47961
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.350176263219741e-4
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.608e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.950000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.38e0

FS
type: SiteQuality
SIO_000300: 1.261e0

DP
type: SiteQuality
SIO_000300: 1.900696e6

GenotypeQuality
all individuals: 1436
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32364
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085853739935756e-5
allele num: 47942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

MQRankSum
type: SiteQuality
SIO_000300: -7.37e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 6.208e0

QD
type: SiteQuality
SIO_000300: 1.094e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

DP
type: SiteQuality
SIO_000300: 1.898721e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3943
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 7
allele frequency: 8.227550540667607e-4
allele num: 8508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073652566029633e-4
allele num: 9314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.64e-2

DP
type: SiteQuality
SIO_000300: 1.897135e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

FS
type: SiteQuality
SIO_000300: 1.174e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 4.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.743e0

QD
type: SiteQuality
SIO_000300: 1.402e1

GenotypeQuality
all individuals: 975
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3932
bin: 7.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086985558059938e-5
allele num: 47916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

DP
type: SiteQuality
SIO_000300: 1.895482e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.91e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.081e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.425e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.775e0

QD
type: SiteQuality
SIO_000300: 3.386e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
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GenotypeQuality
all individuals: 2413
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10033
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088423866507947e-5
allele num: 47883
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 3.819e0

MQRankSum
type: SiteQuality
SIO_000300: -5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.823e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

DP
type: SiteQuality
SIO_000300: 1.891345e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.54e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10033
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088423866507947e-5
allele num: 47883
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.819e0

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.54e-1

QD
type: SiteQuality
SIO_000300: 1.823e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

MQRankSum
type: SiteQuality
SIO_000300: -5.23e-1

DP
type: SiteQuality
SIO_000300: 1.891345e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10033
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 7.518796992481203e-4
allele num: 9310
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.176055509820064e-4
allele num: 8503
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.461896706555563e-4
allele num: 47883
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.86e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.891345e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

QD
type: SiteQuality
SIO_000300: 1.823e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.23e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1426
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074229240519927e-4
allele num: 9309
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8502
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.874e0

VQSLOD
type: SiteQuality
SIO_000300: 7.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

DP
type: SiteQuality
SIO_000300: 1.889194e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3896
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6178
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088903743315508e-5
allele num: 47872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.874e0

DP
type: SiteQuality
SIO_000300: 1.889194e6

VQSLOD
type: SiteQuality
SIO_000300: 7.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.232e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9512
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10017
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 1.887729e6

VQSLOD
type: SiteQuality
SIO_000300: -3.878e-1

QD
type: SiteQuality
SIO_000300: 1.028e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.379e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.346e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8483
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.188130837207354e-5
allele num: 47754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4497
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9825
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.867272e6

FS
type: SiteQuality
SIO_000300: 1.3223e1

VQSLOD
type: SiteQuality
SIO_000300: -1.176e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.653e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.025e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.189622305549154e-5
allele num: 47737
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.867381e6

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-2

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 3.589e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.05e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.918e-1

QD
type: SiteQuality
SIO_000300: 1.248e1

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2365
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4497
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8483
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9803
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 9.071666162685213e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47726
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.24e-2

FS
type: SiteQuality
SIO_000300: 2.546e0

DP
type: SiteQuality
SIO_000300: 1.864891e6

VQSLOD
type: SiteQuality
SIO_000300: -1.422e0

QD
type: SiteQuality
SIO_000300: 1.703e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.134e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 6161
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 954
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9789
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9293
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.095557418273261e-5
allele num: 47720
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

VQSLOD
type: SiteQuality
SIO_000300: -9.303e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

DP
type: SiteQuality
SIO_000300: 1.86266e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.83e0

QD
type: SiteQuality
SIO_000300: 1.017e1

GenotypeQuality
all individuals: 6155
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 29280
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 1.833674900226513e-3
allele num: 9271
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.180637544273908e-4
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

QD
type: SiteQuality
SIO_000300: 1.403e1

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

DP
type: SiteQuality
SIO_000300: 1.839281e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.41e-2

FS
type: SiteQuality
SIO_000300: 5.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.84e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.109170674090947e-5
allele num: 47412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9433
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9251
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8459
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.517220452131695e-4
allele num: 6591
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.342e0

MQRankSum
type: SiteQuality
SIO_000300: -1.533e0

FS
type: SiteQuality
SIO_000300: 8.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

DP
type: SiteQuality
SIO_000300: 1.821997e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.941e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9425
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6589
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4468
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.182172833668282e-4
allele num: 8459
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9250
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.493e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.417e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

DP
type: SiteQuality
SIO_000300: 1.820344e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 1058
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.083658430862592e-4
allele num: 9228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.543774112858778e-4
allele num: 47174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6555
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4439
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9137
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8441
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

FS
type: SiteQuality
SIO_000300: 2.185e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

QD
type: SiteQuality
SIO_000300: 1.766e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.53e-2

DP
type: SiteQuality
SIO_000300: 1.785063e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.088139281828074e-4
allele num: 9190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 8863
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

FS
type: SiteQuality
SIO_000300: 1.374e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.023e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.312e1

DP
type: SiteQuality
SIO_000300: 1.741131e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8421
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46855
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.132246376811594e-4
allele num: 8832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9187
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.735442e6

VQSLOD
type: SiteQuality
SIO_000300: 3.84e-1

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

QD
type: SiteQuality
SIO_000300: 8.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.021e0

GenotypeQuality
all individuals: 875
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8383
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.482701990189511e-5
allele num: 46277
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8105
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9117
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.905e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.141e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e0

QD
type: SiteQuality
SIO_000300: 2.196e1

DP
type: SiteQuality
SIO_000300: 1.604675e6

GenotypeQuality
all individuals: 2077
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3941
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9115
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6453
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8381
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.234415504258734e-4
allele num: 8101
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.320867630220148e-5
allele num: 46287
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.343e0

FS
type: SiteQuality
SIO_000300: 1.0571e1

MQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

QD
type: SiteQuality
SIO_000300: 2.326e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.601984e6

GenotypeQuality
all individuals: 853
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6076
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1966
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.202935161794779e-4
allele num: 8313
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9024
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.002e1

DP
type: SiteQuality
SIO_000300: 1.496638e6

VQSLOD
type: SiteQuality
SIO_000300: -3.704e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
all individuals: 1056
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5897
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45249
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8983
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.58052789631737e-4
allele num: 6327
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 559
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8297
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7304
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 5.929e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.709e0

DP
type: SiteQuality
SIO_000300: 1.484612e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.549e1

GenotypeQuality
all individuals: 2619
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9229
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4499
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.183992422448496e-4
allele num: 8446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.322577925772935e-5
allele num: 47449
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.092e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.11e-2

DP
type: SiteQuality
SIO_000300: 1.991714e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.76e-1

FS
type: SiteQuality
SIO_000300: 2.48e0

QD
type: SiteQuality
SIO_000300: 1.69e1

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

GenotypeQuality
all individuals: 14044
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2670
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.107170701898561e-5
allele num: 47457
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9859
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9227
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4501
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.107e1

DP
type: SiteQuality
SIO_000300: 1.997012e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.132e1

VQSLOD
type: SiteQuality
SIO_000300: 3.54e0

GenotypeQuality
all individuals: 901
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9239
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8457
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9907
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.4107826233231e-5
allele num: 47558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-2

QD
type: SiteQuality
SIO_000300: 1.665e1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.54e-2

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 4.879e0

DP
type: SiteQuality
SIO_000300: 2.037057e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.355e0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.998000399920016e-5
allele num: 10002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47713
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

DP
type: SiteQuality
SIO_000300: 2.062541e6

FS
type: SiteQuality
SIO_000300: 5.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.048e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8471
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9271
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.190236748376283e-5
allele num: 47730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10009
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.064738e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

QD
type: SiteQuality
SIO_000300: 1.75e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.15e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.092663123090445e-5
allele num: 47786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.081e0

QD
type: SiteQuality
SIO_000300: 1.574e1

FS
type: SiteQuality
SIO_000300: 8.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: 8.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.12e0

VQSLOD
type: SiteQuality
SIO_000300: -1.71e0

DP
type: SiteQuality
SIO_000300: 2.069618e6

GenotypeQuality
all individuals: 2201
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47868
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.076310407921645e-4
allele num: 9291
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8491
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.075626e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.484e0

FS
type: SiteQuality
SIO_000300: 9.18e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

VQSLOD
type: SiteQuality
SIO_000300: -7.163e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 8.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2201
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.973535533749628e-4
allele num: 10089
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8495
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.358e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
SIO_000300: 2.272e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.549e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.245e-1

DP
type: SiteQuality
SIO_000300: 2.077094e6

GenotypeQuality
all individuals: 2187
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14039
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8495
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.909820632246556e-5
allele num: 10091
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.244e1

DP
type: SiteQuality
SIO_000300: 2.077067e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.62e-2

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28582
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2676
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.908838684106223e-5
allele num: 10092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47903
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.28e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.96e-2

DP
type: SiteQuality
SIO_000300: 2.077398e6

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8493
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088075003654131e-5
allele num: 47891
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.270000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.63e-1

DP
type: SiteQuality
SIO_000300: 2.077279e6

QD
type: SiteQuality
SIO_000300: 2.979e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 28461
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10081
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.176324416880703e-5
allele num: 47889
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.428e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.612e-1

QD
type: SiteQuality
SIO_000300: 2.995e1

DP
type: SiteQuality
SIO_000300: 2.076527e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.416e0