X-6995346-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995346
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995346
    reference: chr 0
allele count: 1
allele frequency: 1.397253000600819e-5
allele num: 71569
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.494A>T
  hgvsp: ENSP00000396452.2:p.Asp165Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.296A>T
  hgvsp: ENSP00000406260.2:p.Asp99Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.425A>T
  hgvsp: ENSP00000370467.5:p.Asp142Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.425A>T
  hgvsp: ENSP00000430995.1:p.Asp142Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.425A>T
  hgvsp: ENSP00000441208.1:p.Asp142Val
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 589
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp165Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-6995349-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995349
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995349
    reference: chr 0
allele count: 1
allele frequency: 1.378834884522578e-5
allele num: 72525
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.422A>G
  hgvsp: ENSP00000430995.1:p.Asp141Gly
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.422A>G
  hgvsp: ENSP00000370467.5:p.Asp141Gly
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.491A>G
  hgvsp: ENSP00000396452.2:p.Asp164Gly
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.293A>G
  hgvsp: ENSP00000406260.2:p.Asp98Gly
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.422A>G
  hgvsp: ENSP00000441208.1:p.Asp141Gly
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp164Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

X-6995377-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995377
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995377
    reference: chr 0
allele count: 1
allele frequency: 1.241095142353613e-5
allele num: 80574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.394A>T
  hgvsp: ENSP00000430995.1:p.Ser132Cys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.463A>T
  hgvsp: ENSP00000396452.2:p.Ser155Cys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.265A>T
  hgvsp: ENSP00000406260.2:p.Ser89Cys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.394A>T
  hgvsp: ENSP00000441208.1:p.Ser132Cys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.394A>T
  hgvsp: ENSP00000370467.5:p.Ser132Cys
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ser155Cys
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

X-6995378-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995378
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995378
    reference: chr 0
allele count: 1
allele frequency: 1.237271568736622e-5
allele num: 80823
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.264C>T
  hgvsp: ENST00000412827.2:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.462C>T
  hgvsp: ENST00000424830.2:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.393C>T
  hgvsp: ENST00000381077.5:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.393C>T
  hgvsp: ENST00000540122.1:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.393C>T
  hgvsp: ENST00000486446.2:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe154Phe
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

X-6995385-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995385
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995385
    reference: chr 0
allele count: 1
allele frequency: 1.219318888468901e-5
allele num: 82013
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.455A>T
  hgvsp: ENSP00000396452.2:p.Glu152Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.386A>T
  hgvsp: ENSP00000441208.1:p.Glu129Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.386A>T
  hgvsp: ENSP00000370467.5:p.Glu129Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.257A>T
  hgvsp: ENSP00000406260.2:p.Glu86Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.386A>T
  hgvsp: ENSP00000430995.1:p.Glu129Val
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 320
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genotype depth: GenotypeDepth
  all individuals: 837
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genotype depth: GenotypeDepth
  all individuals: 165
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 37134
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genotype quality: GenotypeQuality
  all individuals: 817
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu152Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

X-6995393-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995393
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995393
    reference: chr 0
allele count: 39
allele frequency: 4.753778644563627e-4
allele num: 82040
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.447C>T
  hgvsp: ENST00000424830.2:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.378C>T
  hgvsp: ENST00000540122.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.249C>T
  hgvsp: ENST00000412827.2:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.378C>T
  hgvsp: ENST00000381077.5:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.378C>T
  hgvsp: ENST00000486446.2:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25757
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 967
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genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3440
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 363
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  variant carriers: 3
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1177
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg149Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ

X-6995394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995394
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995394
    reference: chr 0
allele count: 5
allele frequency: 6.091098468697845e-5
allele num: 82087
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.446G>A
  hgvsp: ENSP00000396452.2:p.Arg149His
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.248G>A
  hgvsp: ENSP00000406260.2:p.Arg83His
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.377G>A
  hgvsp: ENSP00000441208.1:p.Arg126His
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.377G>A
  hgvsp: ENSP00000430995.1:p.Arg126His
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.377G>A
  hgvsp: ENSP00000370467.5:p.Arg126His
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1299
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  variant carriers: 0
hgvs: p.Arg149His
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-6995395-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995395
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995395
    reference: chr 0
allele count: 9
allele frequency: 1.095450230044548e-4
allele num: 82158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.376C>T
  hgvsp: ENSP00000370467.5:p.Arg126Cys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.445C>T
  hgvsp: ENSP00000396452.2:p.Arg149Cys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.376C>T
  hgvsp: ENSP00000441208.1:p.Arg126Cys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.247C>T
  hgvsp: ENSP00000406260.2:p.Arg83Cys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.376C>T
  hgvsp: ENSP00000430995.1:p.Arg126Cys
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25877
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6006
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg149Cys
num of homozygotes: 1
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

X-6995410-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995410
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995410
    reference: chr 0
allele count: 8
allele frequency: 9.650763013450751e-5
allele num: 82895
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.361G>A
  hgvsp: ENSP00000430995.1:p.Asp121Asn
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.232G>A
  hgvsp: ENSP00000406260.2:p.Asp78Asn
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.430G>A
  hgvsp: ENSP00000396452.2:p.Asp144Asn
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.361G>A
  hgvsp: ENSP00000370467.5:p.Asp121Asn
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.361G>A
  hgvsp: ENSP00000441208.1:p.Asp121Asn
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 475
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
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genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1078
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35860
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 476
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genotype quality: GenotypeQuality
  all individuals: 463
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4044
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 712
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 583
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genotype quality: GenotypeQuality
  all individuals: 1492
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genotype quality: GenotypeQuality
  all individuals: 5053
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp144Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

X-6995414-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995414
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995414
    reference: chr 0
allele count: 710
allele frequency: 8.531295435156147e-3
allele num: 83223
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.357G>A
  hgvsp: ENST00000540122.1:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.426G>A
  hgvsp: ENST00000424830.2:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.357G>A
  hgvsp: ENST00000381077.5:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.228G>A
  hgvsp: ENST00000412827.2:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.357G>A
  hgvsp: ENST00000486446.2:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 9.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 28946
  bin: 2.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 13461
  bin: 2.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 1.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 3.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 163
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  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1336
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  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 469
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  variant carriers: 11
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 503
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 3.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 36944
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 4622
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genotype quality: GenotypeQuality
  all individuals: 614
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genotype quality: GenotypeQuality
  all individuals: 82
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 5.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 8.25e1
  variant carriers: 18
hgvs: p.Ser142Ser
num of homozygotes: 7
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

X-6995417-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995417
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995417
    reference: chr 0
allele count: 22889
allele frequency: 2.715377132417491e-1
allele num: 84294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.225G>A
  hgvsp: ENST00000412827.2:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.354G>A
  hgvsp: ENST00000486446.2:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.354G>A
  hgvsp: ENST00000381077.5:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.354G>A
  hgvsp: ENST00000540122.1:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.423G>A
  hgvsp: ENST00000424830.2:c.423G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 368
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 3.75e1
  variant carriers: 1792
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 1.25e1
  variant carriers: 1352
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 833
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 1.75e1
  variant carriers: 2243
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 4.25e1
  variant carriers: 1720
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.25e1
  variant carriers: 1364
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 3.25e1
  variant carriers: 1814
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 5.75e1
  variant carriers: 1120
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 7.5e0
  variant carriers: 361
genotype depth: GenotypeDepth
  all individuals: 12259
  bin: 2.75e1
  variant carriers: 1989
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 9.75e1
  variant carriers: 1000
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 4.75e1
  variant carriers: 1606
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.25e1
  variant carriers: 516
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 22780
  bin: 2.25e1
  variant carriers: 2198
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.25e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 646
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 224
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 1.25e1
  variant carriers: 251
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 4.75e1
  variant carriers: 732
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 619
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 5.75e1
  variant carriers: 492
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 814
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 8.25e1
  variant carriers: 440
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 2.75e1
  variant carriers: 313
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.5e0
  variant carriers: 184
genotype quality: GenotypeQuality
  all individuals: 28674
  bin: 6.25e1
  variant carriers: 622
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 2.25e1
  variant carriers: 326
genotype quality: GenotypeQuality
  all individuals: 3257
  bin: 6.75e1
  variant carriers: 622
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.75e1
  variant carriers: 266
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.5e0
  variant carriers: 205
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.75e1
  variant carriers: 243
hgvs: p.Ala141Ala
num of homozygotes: 2409
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

X-6995417-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995417
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995417
    reference: chr 0
allele count: 1
allele frequency: 1.186324056279213e-5
allele num: 84294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.225G>T
  hgvsp: ENST00000412827.2:c.225G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.423G>T
  hgvsp: ENST00000424830.2:c.423G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.354G>T
  hgvsp: ENST00000486446.2:c.354G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.354G>T
  hgvsp: ENST00000540122.1:c.354G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.354G>T
  hgvsp: ENST00000381077.5:c.354G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28674
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala141Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-6995418-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995418
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995418
    reference: chr 0
allele count: 2
allele frequency: 2.348382551517642e-5
allele num: 85165
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.353C>T
  hgvsp: ENSP00000441208.1:p.Ala118Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.422C>T
  hgvsp: ENSP00000396452.2:p.Ala141Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.353C>T
  hgvsp: ENSP00000430995.1:p.Ala118Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.224C>T
  hgvsp: ENSP00000406260.2:p.Ala75Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.353C>T
  hgvsp: ENSP00000370467.5:p.Ala118Val
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11240
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3828
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala141Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-6995419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995419
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995419
    reference: chr 0
allele count: 7
allele frequency: 8.22126959891949e-5
allele num: 85145
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.352G>A
  hgvsp: ENSP00000370467.5:p.Ala118Thr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.223G>A
  hgvsp: ENSP00000406260.2:p.Ala75Thr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.421G>A
  hgvsp: ENSP00000396452.2:p.Ala141Thr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.352G>A
  hgvsp: ENSP00000430995.1:p.Ala118Thr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.352G>A
  hgvsp: ENSP00000441208.1:p.Ala118Thr
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30528
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11238
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3812
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala141Thr
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-6995420-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995420
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995420
    reference: chr 0
allele count: 25
allele frequency: 2.934134547673818e-4
allele num: 85204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.351C>T
  hgvsp: ENST00000381077.5:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.222C>T
  hgvsp: ENST00000412827.2:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.351C>T
  hgvsp: ENST00000486446.2:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.420C>T
  hgvsp: ENST00000424830.2:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.351C>T
  hgvsp: ENST00000540122.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12616
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23084
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30850
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3861
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser140Ser
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

X-6995426-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995426
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995426
    reference: chr 0
allele count: 1
allele frequency: 1.171907044333244e-5
allele num: 85331
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.414G>C
  hgvsp: ENST00000424830.2:c.414G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.345G>C
  hgvsp: ENST00000381077.5:c.345G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.216G>C
  hgvsp: ENST00000412827.2:c.216G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.345G>C
  hgvsp: ENST00000540122.1:c.345G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.345G>C
  hgvsp: ENST00000486446.2:c.345G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
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genotype depth: GenotypeDepth
  all individuals: 12775
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genotype depth: GenotypeDepth
  all individuals: 2040
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genotype depth: GenotypeDepth
  all individuals: 1787
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genotype depth: GenotypeDepth
  all individuals: 196
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genotype depth: GenotypeDepth
  all individuals: 1081
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genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23478
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genotype depth: GenotypeDepth
  all individuals: 2821
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genotype depth: GenotypeDepth
  all individuals: 634
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genotype depth: GenotypeDepth
  all individuals: 502
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 806
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 752
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genotype depth: GenotypeDepth
  all individuals: 2487
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 293
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1173
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 31573
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser138Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-6995427-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995427
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995427
    reference: chr 0
allele count: 3
allele frequency: 3.515309171441628e-5
allele num: 85341
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.413C>T
  hgvsp: ENSP00000396452.2:p.Ser138Leu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.344C>T
  hgvsp: ENSP00000441208.1:p.Ser115Leu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.344C>T
  hgvsp: ENSP00000430995.1:p.Ser115Leu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.215C>T
  hgvsp: ENSP00000406260.2:p.Ser72Leu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.344C>T
  hgvsp: ENSP00000370467.5:p.Ser115Leu
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1080
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genotype depth: GenotypeDepth
  all individuals: 368
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1643
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2219
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genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser138Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-6995438-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995438
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995438
    reference: chr 0
allele count: 24510
allele frequency: 2.88869507825759e-1
allele num: 84848
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.402G>A
  hgvsp: ENST00000424830.2:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.333G>A
  hgvsp: ENST00000381077.5:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.333G>A
  hgvsp: ENST00000540122.1:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.333G>A
  hgvsp: ENST00000486446.2:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.204G>A
  hgvsp: ENST00000412827.2:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 9.75e1
  variant carriers: 1148
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 6.25e1
  variant carriers: 1022
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1846
genotype depth: GenotypeDepth
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  variant carriers: 20
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 539
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 801
genotype depth: GenotypeDepth
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  variant carriers: 424
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 2139
genotype depth: GenotypeDepth
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  variant carriers: 1684
genotype depth: GenotypeDepth
  all individuals: 688
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  variant carriers: 667
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 2001
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2361
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  variant carriers: 1790
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 570
  bin: 9.25e1
  variant carriers: 428
genotype quality: GenotypeQuality
  all individuals: 3303
  bin: 6.75e1
  variant carriers: 705
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 5.75e1
  variant carriers: 493
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 2.25e1
  variant carriers: 294
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 555
genotype quality: GenotypeQuality
  all individuals: 393
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genotype quality: GenotypeQuality
  all individuals: 937
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genotype quality: GenotypeQuality
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  variant carriers: 551
genotype quality: GenotypeQuality
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  variant carriers: 397
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 5.25e1
  variant carriers: 786
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 7.75e1
  variant carriers: 540
hgvs: p.Leu134Leu
num of homozygotes: 2632
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

X-6995457-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995457
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995457
    reference: chr 0
allele count: 1
allele frequency: 1.200523428214702e-5
allele num: 83297
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.314A>G
  hgvsp: ENSP00000370467.5:p.His105Arg
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.314A>G
  hgvsp: ENSP00000430995.1:p.His105Arg
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.383A>G
  hgvsp: ENSP00000396452.2:p.His128Arg
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.185A>G
  hgvsp: ENSP00000406260.2:p.His62Arg
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.314A>G
  hgvsp: ENSP00000441208.1:p.His105Arg
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19726
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3654
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 540
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4874
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genotype quality: GenotypeQuality
  all individuals: 155
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1061
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genotype quality: GenotypeQuality
  all individuals: 585
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 197
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His128Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff

X-6995463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995463
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995463
    reference: chr 0
allele count: 17
allele frequency: 2.059333018376519e-4
allele num: 82551
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.179G>A
  hgvsp: ENSP00000406260.2:p.Arg60Gln
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.308G>A
  hgvsp: ENSP00000370467.5:p.Arg103Gln
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.308G>A
  hgvsp: ENSP00000441208.1:p.Arg103Gln
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.377G>A
  hgvsp: ENSP00000396452.2:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.308G>A
  hgvsp: ENSP00000430995.1:p.Arg103Gln
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19214
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 5319
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genotype depth: GenotypeDepth
  all individuals: 23349
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 28
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
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genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 7380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 40352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg126Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

X-6995467-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995467
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995467
    reference: chr 0
allele count: 1
allele frequency: 1.220211584688785e-5
allele num: 81953
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.304C>G
  hgvsp: ENSP00000370467.5:p.Leu102Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.304C>G
  hgvsp: ENSP00000441208.1:p.Leu102Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.175C>G
  hgvsp: ENSP00000406260.2:p.Leu59Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.373C>G
  hgvsp: ENSP00000396452.2:p.Leu125Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.304C>G
  hgvsp: ENSP00000430995.1:p.Leu102Val
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 970
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39216
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu125Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

X-6995471-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995471
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995471
    reference: chr 0
allele count: 1
allele frequency: 1.227325167529885e-5
allele num: 81478
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.171C>G
  hgvsp: ENSP00000406260.2:p.Ile57Met
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.369C>G
  hgvsp: ENSP00000396452.2:p.Ile123Met
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.300C>G
  hgvsp: ENSP00000430995.1:p.Ile100Met
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.300C>G
  hgvsp: ENSP00000370467.5:p.Ile100Met
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.300C>G
  hgvsp: ENSP00000441208.1:p.Ile100Met
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 241
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  variant carriers: 0
hgvs: p.Ile123Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

X-6995477-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995477
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995477
    reference: chr 0
allele count: 2
allele frequency: 2.51032370624192e-5
allele num: 79671
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.165C>A
  hgvsp: ENST00000412827.2:c.165C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.294C>A
  hgvsp: ENST00000540122.1:c.294C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.294C>A
  hgvsp: ENST00000486446.2:c.294C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.363C>A
  hgvsp: ENST00000424830.2:c.363C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.294C>A
  hgvsp: ENST00000381077.5:c.294C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6783
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu121Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS

X-6995479-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995479
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995479
    reference: chr 0
allele count: 2
allele frequency: 2.517496601379588e-5
allele num: 79444
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.292C>T
  hgvsp: ENSP00000430995.1:p.Leu98Phe
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.163C>T
  hgvsp: ENSP00000406260.2:p.Leu55Phe
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.292C>T
  hgvsp: ENSP00000370467.5:p.Leu98Phe
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.292C>T
  hgvsp: ENSP00000441208.1:p.Leu98Phe
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.361C>T
  hgvsp: ENSP00000396452.2:p.Leu121Phe
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13089
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Leu121Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD

X-6995480-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995480
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995480
    reference: chr 0
allele count: 4
allele frequency: 5.045090496310777e-5
allele num: 79285
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.360A>T
  hgvsp: ENSP00000396452.2:p.Lys120Asn
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.291A>T
  hgvsp: ENSP00000441208.1:p.Lys97Asn
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.291A>T
  hgvsp: ENSP00000430995.1:p.Lys97Asn
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.162A>T
  hgvsp: ENSP00000406260.2:p.Lys54Asn
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.291A>T
  hgvsp: ENSP00000370467.5:p.Lys97Asn
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18103
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 22
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3988
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys120Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-6995486-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995486
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995486
    reference: chr 0
allele count: 3
allele frequency: 3.877672362536515e-5
allele num: 77366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.285G>T
  hgvsp: ENST00000486446.2:c.285G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.156G>T
  hgvsp: ENST00000412827.2:c.156G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.285G>T
  hgvsp: ENST00000540122.1:c.285G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.354G>T
  hgvsp: ENST00000424830.2:c.354G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.285G>T
  hgvsp: ENST00000381077.5:c.285G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Ala118Ala
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-6995486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995486
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995486
    reference: chr 0
allele count: 3
allele frequency: 3.877672362536515e-5
allele num: 77366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.156G>A
  hgvsp: ENST00000412827.2:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.354G>A
  hgvsp: ENST00000424830.2:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.285G>A
  hgvsp: ENST00000381077.5:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.285G>A
  hgvsp: ENST00000540122.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.285G>A
  hgvsp: ENST00000486446.2:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala118Ala
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ

X-6995488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995488
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995488
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 76822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.283G>A
  hgvsp: ENSP00000370467.5:p.Ala95Thr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.154G>A
  hgvsp: ENSP00000406260.2:p.Ala52Thr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.283G>A
  hgvsp: ENSP00000430995.1:p.Ala95Thr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.283G>A
  hgvsp: ENSP00000441208.1:p.Ala95Thr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.352G>A
  hgvsp: ENSP00000396452.2:p.Ala118Thr
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27661
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3614
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala118Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-6995494-GGGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995494
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995491
    reference: chr 0
allele count: 1
allele frequency: 1.354793258548745e-5
allele num: 73812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.281-7_281-5delTCC
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.350-7_350-5delTCC
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.281-7_281-5delTCC
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.281-7_281-5delTCC
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.152-7_152-5delTCC
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 15606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12002
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20502
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21144
  bin: 6.25e1
  variant carriers: 0
hgvs: c.350-7_350-5delTCC
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: GGGA
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-6995501-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995501
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995501
    reference: chr 0
allele count: 1
allele frequency: 1.37854976564654e-5
allele num: 72540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.281-11C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.281-11C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.350-11C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.281-11C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.152-11C>T
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11057
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

X-6995510-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995510
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995510
    reference: chr 0
allele count: 12
allele frequency: 1.716492633385782e-4
allele num: 69910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.281-20C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.350-20C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.281-20C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.152-20C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.281-20C>T
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8206
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12316
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 217
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 359
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14709
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-6995525-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995525
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995525
    reference: chr 0
allele count: 10
allele frequency: 1.598669906637678e-4
allele num: 62552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.281-35G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.281-35G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.152-35G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.350-35G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.281-35G>A
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

X-6995526-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995526
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995526
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 61988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.281-36C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.350-36C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.281-36C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.152-36C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.281-36C>T
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS

X-6995528-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995528
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995528
    reference: chr 0
allele count: 1
allele frequency: 1.630682930011089e-5
allele num: 61324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.281-38C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.350-38C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.281-38C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.152-38C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.281-38C>T
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17448
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-6995537-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24006995537
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24006995537
    reference: chr 0
allele count: 20069
allele frequency: 3.524834902346494e-1
allele num: 56936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.281-47G>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.152-47G>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.281-47G>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.281-47G>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.350-47G>T
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18569
  bin: 7.5e0
  variant carriers: 5803
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 10
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 271
genotype depth: GenotypeDepth
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  variant carriers: 136
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 90
genotype depth: GenotypeDepth
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  variant carriers: 406
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 701
genotype depth: GenotypeDepth
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  variant carriers: 1359
genotype depth: GenotypeDepth
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  variant carriers: 10
genotype depth: GenotypeDepth
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  variant carriers: 206
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 10097
genotype quality: GenotypeQuality
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  variant carriers: 1748
genotype quality: GenotypeQuality
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  variant carriers: 456
genotype quality: GenotypeQuality
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  variant carriers: 1143
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 2010
genotype quality: GenotypeQuality
  all individuals: 700
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genotype quality: GenotypeQuality
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  variant carriers: 1530
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3702
  bin: 1.25e1
  variant carriers: 667
genotype quality: GenotypeQuality
  all individuals: 10620
  bin: 2.25e1
  variant carriers: 2250
num of homozygotes: 2632
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-7023613-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023613
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023613
    reference: chr 0
allele count: 5
allele frequency: 1.164605315258659e-4
allele num: 42933
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.319+48A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.280+48A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.280+48A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.349+48A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.280+48A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+177A>G
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23312
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 993
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12170
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 435
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3592
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 12756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3911
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

X-7023615-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023615
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023615
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 42838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.319+46C>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.280+46C>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.280+46C>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.349+46C>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+175C>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.280+46C>A
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3907
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-7023620-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023620
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023620
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 43190
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.280+41A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.349+41A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.280+41A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+170A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.319+41A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.280+41A>G
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 23851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

X-7023647-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023647
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023647
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 50705
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.319+14G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+143G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.280+14G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.280+14G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.280+14G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.349+14G>A
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24838
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

X-7023648-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023648
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023648
    reference: chr 0
allele count: 1
allele frequency: 1.913216499579092e-5
allele num: 52268
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.349+13C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.280+13C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.280+13C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.319+13C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.280+13C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+142C>T
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
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genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
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genotype depth: GenotypeDepth
  all individuals: 342
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14896
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26063
  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3605
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genotype depth: GenotypeDepth
  all individuals: 6830
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 75
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 334
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 385
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3450
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genotype quality: GenotypeQuality
  all individuals: 441
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 711
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

X-7023656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023656
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023656
    reference: chr 0
allele count: 1
allele frequency: 1.782213509178399e-5
allele num: 56110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.280+5G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.280+5G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.349+5G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.319+5G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.280+5G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+134G>A
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 446
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 342
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 225
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 149
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 367
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
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genotype quality: GenotypeQuality
  all individuals: 435
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 500
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genotype quality: GenotypeQuality
  all individuals: 1121
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genotype quality: GenotypeQuality
  all individuals: 2407
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genotype quality: GenotypeQuality
  all individuals: 2358
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  variant carriers: 0
hgvs: c.349+5G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-7023657-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023657
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023657
    reference: chr 0
allele count: 1
allele frequency: 1.761400665809452e-5
allele num: 56773
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.349+4C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.280+4C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.319+4C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.280+4C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+133C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.280+4C>T
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2320
  bin: 7.5e0
  variant carriers: 0
hgvs: c.349+4C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-7023671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023671
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023671
    reference: chr 0
allele count: 20
allele frequency: 3.186083188632055e-4
allele num: 62773
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.270G>A
  hgvsp: ENST00000381077.5:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+119G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.270G>A
  hgvsp: ENST00000540122.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.270G>A
  hgvsp: ENST00000486446.2:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.309G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.339G>A
  hgvsp: ENST00000424830.2:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20864
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4771
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21563
  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala113Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-7023672-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023672
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023672
    reference: chr 0
allele count: 39
allele frequency: 6.14967359424769e-4
allele num: 63418
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.338C>T
  hgvsp: ENSP00000396452.2:p.Ala113Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+118C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.269C>T
  hgvsp: ENSP00000430995.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.269C>T
  hgvsp: ENSP00000441208.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.308C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.269C>T
  hgvsp: ENSP00000370467.5:p.Ala90Val
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20395
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21769
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20418
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Ala113Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

X-7023675-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023675
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023675
    reference: chr 0
allele count: 2
allele frequency: 3.086562649505378e-5
allele num: 64797
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.305C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.266C>T
  hgvsp: ENSP00000441208.1:p.Ala89Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.266C>T
  hgvsp: ENSP00000430995.1:p.Ala89Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.266C>T
  hgvsp: ENSP00000370467.5:p.Ala89Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+115C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.335C>T
  hgvsp: ENSP00000396452.2:p.Ala112Val
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala112Val
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-7023676-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023676
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023676
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 65258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.265G>C
  hgvsp: ENSP00000370467.5:p.Ala89Pro
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.304G>C
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.265G>C
  hgvsp: ENSP00000430995.1:p.Ala89Pro
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.334G>C
  hgvsp: ENSP00000396452.2:p.Ala112Pro
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.265G>C
  hgvsp: ENSP00000441208.1:p.Ala89Pro
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+114G>C
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19486
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala112Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

X-7023677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023677
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023677
    reference: chr 0
allele count: 2
allele frequency: 3.040252949045361e-5
allele num: 65784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.264G>A
  hgvsp: ENST00000381077.5:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.333G>A
  hgvsp: ENST00000424830.2:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.264G>A
  hgvsp: ENST00000486446.2:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.303G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+113G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.264G>A
  hgvsp: ENST00000540122.1:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23314
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr111Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-7023678-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023678
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023678
    reference: chr 0
allele count: 22030
allele frequency: 3.101724744808166e-1
allele num: 71025
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.263C>T
  hgvsp: ENSP00000370467.5:p.Thr88Met
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.332C>T
  hgvsp: ENSP00000396452.2:p.Thr111Met
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+112C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.263C>T
  hgvsp: ENSP00000430995.1:p.Thr88Met
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.263C>T
  hgvsp: ENSP00000441208.1:p.Thr88Met
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.302C>T
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 958
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 3.75e1
  variant carriers: 1772
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.25e1
  variant carriers: 1056
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.5e0
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.25e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 6367
  bin: 1.25e1
  variant carriers: 3016
genotype depth: GenotypeDepth
  all individuals: 17345
  bin: 2.25e1
  variant carriers: 2927
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 1.75e1
  variant carriers: 3424
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.75e1
  variant carriers: 630
genotype depth: GenotypeDepth
  all individuals: 13311
  bin: 7.5e0
  variant carriers: 1248
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 3.25e1
  variant carriers: 2348
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.75e1
  variant carriers: 271
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 2.75e1
  variant carriers: 2645
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 7.25e1
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 1128
genotype quality: GenotypeQuality
  all individuals: 12470
  bin: 9.75e1
  variant carriers: 11436
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 3.75e1
  variant carriers: 1169
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 2.5e0
  variant carriers: 204
genotype quality: GenotypeQuality
  all individuals: 13184
  bin: 2.25e1
  variant carriers: 645
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 1.25e1
  variant carriers: 264
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 3.25e1
  variant carriers: 1023
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.25e1
  variant carriers: 341
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 4.25e1
  variant carriers: 621
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 5.75e1
  variant carriers: 482
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 6.75e1
  variant carriers: 575
hgvs: p.Thr111Met
num of homozygotes: 2401
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

X-7023689-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023689
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023689
    reference: chr 0
allele count: 1
allele frequency: 1.355950589160531e-5
allele num: 73749
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.252A>G
  hgvsp: ENST00000381077.5:c.252A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.321A>G
  hgvsp: ENST00000424830.2:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.291A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.252A>G
  hgvsp: ENST00000540122.1:c.252A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.252A>G
  hgvsp: ENST00000486446.2:c.252A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+101A>G
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19860
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13883
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3628
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu107Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

X-7023692-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023692
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023692
    reference: chr 0
allele count: 4
allele frequency: 5.393306906129493e-5
allele num: 74166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.249G>A
  hgvsp: ENST00000486446.2:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.249G>A
  hgvsp: ENST00000381077.5:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+98G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.318G>A
  hgvsp: ENST00000424830.2:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.249G>A
  hgvsp: ENST00000540122.1:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.288G>A
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13618
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 784
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 28083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys106Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

X-7023701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023701
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023701
    reference: chr 0
allele count: 1
allele frequency: 1.331894886855529e-5
allele num: 75081
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+89G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.309G>A
  hgvsp: ENST00000424830.2:c.309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.240G>A
  hgvsp: ENST00000540122.1:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.279G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.240G>A
  hgvsp: ENST00000381077.5:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.240G>A
  hgvsp: ENST00000486446.2:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11153
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9766
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12954
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29456
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr103Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-7023702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023702
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023702
    reference: chr 0
allele count: 1
allele frequency: 1.328479953237506e-5
allele num: 75274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+88C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.278C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.308C>T
  hgvsp: ENSP00000396452.2:p.Thr103Met
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.239C>T
  hgvsp: ENSP00000370467.5:p.Thr80Met
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.239C>T
  hgvsp: ENSP00000430995.1:p.Thr80Met
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.239C>T
  hgvsp: ENSP00000441208.1:p.Thr80Met
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
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genotype quality: GenotypeQuality
  all individuals: 594
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr103Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

X-7023710-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023710
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023710
    reference: chr 0
allele count: 1
allele frequency: 1.315322188169992e-5
allele num: 76027
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.270A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.231A>G
  hgvsp: ENST00000486446.2:c.231A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.231A>G
  hgvsp: ENST00000540122.1:c.231A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.231A>G
  hgvsp: ENST00000381077.5:c.231A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+80A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.300A>G
  hgvsp: ENST00000424830.2:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22259
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
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genotype depth: GenotypeDepth
  all individuals: 340
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 771
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genotype quality: GenotypeQuality
  all individuals: 30336
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genotype quality: GenotypeQuality
  all individuals: 3746
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genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu100Glu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

X-7023712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023712
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023712
    reference: chr 0
allele count: 1
allele frequency: 1.31637837980149e-5
allele num: 75966
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.298G>A
  hgvsp: ENSP00000396452.2:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.229G>A
  hgvsp: ENSP00000430995.1:p.Glu77Lys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.229G>A
  hgvsp: ENSP00000370467.5:p.Glu77Lys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.229G>A
  hgvsp: ENSP00000441208.1:p.Glu77Lys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.268G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+78G>A
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12410
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 28396
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu100Lys
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-7023723-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023723
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023723
    reference: chr 0
allele count: 1
allele frequency: 1.304444241530896e-5
allele num: 76661
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.218A>T
  hgvsp: ENSP00000441208.1:p.Glu73Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.287A>T
  hgvsp: ENSP00000396452.2:p.Glu96Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.257A>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+67A>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.218A>T
  hgvsp: ENSP00000370467.5:p.Glu73Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.218A>T
  hgvsp: ENSP00000430995.1:p.Glu73Val
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu96Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

X-7023724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023724
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023724
    reference: chr 0
allele count: 1
allele frequency: 1.304665483769961e-5
allele num: 76648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.217G>A
  hgvsp: ENSP00000441208.1:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.217G>A
  hgvsp: ENSP00000370467.5:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+66G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.286G>A
  hgvsp: ENSP00000396452.2:p.Glu96Lys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.256G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.217G>A
  hgvsp: ENSP00000430995.1:p.Glu73Lys
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 112
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genotype depth: GenotypeDepth
  all individuals: 419
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29012
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1942
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genotype quality: GenotypeQuality
  all individuals: 56
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu96Lys
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-7023730-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023730
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023730
    reference: chr 0
allele count: 3
allele frequency: 3.904521435822682e-5
allele num: 76834
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.211A>G
  hgvsp: ENSP00000430995.1:p.Lys71Glu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.250A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.280A>G
  hgvsp: ENSP00000396452.2:p.Lys94Glu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.211A>G
  hgvsp: ENSP00000441208.1:p.Lys71Glu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.211A>G
  hgvsp: ENSP00000370467.5:p.Lys71Glu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+60A>G
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1202
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1972
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys94Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

X-7023738-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023738
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023738
    reference: chr 0
allele count: 1
allele frequency: 1.30033938858042e-5
allele num: 76903
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+52C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.203C>T
  hgvsp: ENSP00000430995.1:p.Pro68Leu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.272C>T
  hgvsp: ENSP00000396452.2:p.Pro91Leu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.203C>T
  hgvsp: ENSP00000441208.1:p.Pro68Leu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.242C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.203C>T
  hgvsp: ENSP00000370467.5:p.Pro68Leu
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11910
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro91Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

X-7023751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023751
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023751
    reference: chr 0
allele count: 2
allele frequency: 2.578549050449312e-5
allele num: 77563
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.190G>A
  hgvsp: ENSP00000370467.5:p.Val64Ile
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.190G>A
  hgvsp: ENSP00000430995.1:p.Val64Ile
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.190G>A
  hgvsp: ENSP00000441208.1:p.Val64Ile
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.229G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+39G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.259G>A
  hgvsp: ENSP00000396452.2:p.Val87Ile
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10768
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29988
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11522
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val87Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-7023771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023771
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023771
    reference: chr 0
allele count: 1
allele frequency: 1.279083153195789e-5
allele num: 78181
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.170C>T
  hgvsp: ENSP00000430995.1:p.Ala57Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.239C>T
  hgvsp: ENSP00000396452.2:p.Ala80Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.170C>T
  hgvsp: ENSP00000441208.1:p.Ala57Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.170C>T
  hgvsp: ENSP00000370467.5:p.Ala57Val
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.209C>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+19C>T
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3630
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala80Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

X-7023783-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023783
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023783
    reference: chr 0
allele count: 1
allele frequency: 1.272685621197852e-5
allele num: 78574
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.227A>G
  hgvsp: ENSP00000396452.2:p.Lys76Arg
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.197A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.151+7A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.158A>G
  hgvsp: ENSP00000430995.1:p.Lys53Arg
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.158A>G
  hgvsp: ENSP00000441208.1:p.Lys53Arg
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.158A>G
  hgvsp: ENSP00000370467.5:p.Lys53Arg
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33376
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys76Arg
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

X-7023821-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023821
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023821
    reference: chr 0
allele count: 1
allele frequency: 1.279819801371967e-5
allele num: 78136
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.189A>G
  hgvsp: ENST00000424830.2:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.120A>G
  hgvsp: ENST00000412827.2:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.120A>G
  hgvsp: ENST00000381077.5:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.120A>G
  hgvsp: ENST00000540122.1:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.159A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.120A>G
  hgvsp: ENST00000486446.2:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys63Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

X-7023822-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023822
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023822
    reference: chr 0
allele count: 2
allele frequency: 2.559770644550248e-5
allele num: 78132
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.188A>G
  hgvsp: ENSP00000396452.2:p.Lys63Arg
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.119A>G
  hgvsp: ENSP00000406260.2:p.Lys40Arg
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.119A>G
  hgvsp: ENSP00000441208.1:p.Lys40Arg
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.119A>G
  hgvsp: ENSP00000370467.5:p.Lys40Arg
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.158A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.119A>G
  hgvsp: ENSP00000430995.1:p.Lys40Arg
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 510
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys63Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

X-7023824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023824
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023824
    reference: chr 0
allele count: 1
allele frequency: 1.283828891285369e-5
allele num: 77892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.117G>A
  hgvsp: ENST00000486446.2:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.117G>A
  hgvsp: ENST00000540122.1:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.117G>A
  hgvsp: ENST00000381077.5:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.117G>A
  hgvsp: ENST00000412827.2:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.186G>A
  hgvsp: ENST00000424830.2:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.156G>A
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13820
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 870
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys62Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

X-7023829-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023829
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023829
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 77715
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.112G>T
  hgvsp: ENSP00000430995.1:p.Asp38Tyr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.112G>T
  hgvsp: ENSP00000370467.5:p.Asp38Tyr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.181G>T
  hgvsp: ENSP00000396452.2:p.Asp61Tyr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.112G>T
  hgvsp: ENSP00000441208.1:p.Asp38Tyr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.112G>T
  hgvsp: ENSP00000406260.2:p.Asp38Tyr
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.151G>T
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp61Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

X-7023831-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023831
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023831
    reference: chr 0
allele count: 3
allele frequency: 3.864485379363648e-5
allele num: 77630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.110A>G
  hgvsp: ENSP00000430995.1:p.Tyr37Cys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.179A>G
  hgvsp: ENSP00000396452.2:p.Tyr60Cys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.149A>G
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.110A>G
  hgvsp: ENSP00000441208.1:p.Tyr37Cys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.110A>G
  hgvsp: ENSP00000406260.2:p.Tyr37Cys
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.110A>G
  hgvsp: ENSP00000370467.5:p.Tyr37Cys
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21874
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr60Cys
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-7023831-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023831
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023831
    reference: chr 0
allele count: 10
allele frequency: 1.288161793121216e-4
allele num: 77630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.149A>C
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.179A>C
  hgvsp: ENSP00000396452.2:p.Tyr60Ser
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.110A>C
  hgvsp: ENSP00000370467.5:p.Tyr37Ser
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.110A>C
  hgvsp: ENSP00000441208.1:p.Tyr37Ser
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.110A>C
  hgvsp: ENSP00000406260.2:p.Tyr37Ser
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.110A>C
  hgvsp: ENSP00000430995.1:p.Tyr37Ser
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21874
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8667
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31857
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Tyr60Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

X-7023832-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023832
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023832
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 77571
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.148T>C
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.178T>C
  hgvsp: ENSP00000396452.2:p.Tyr60His
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.109T>C
  hgvsp: ENSP00000406260.2:p.Tyr37His
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.109T>C
  hgvsp: ENSP00000441208.1:p.Tyr37His
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.109T>C
  hgvsp: ENSP00000430995.1:p.Tyr37His
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.109T>C
  hgvsp: ENSP00000370467.5:p.Tyr37His
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr60His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

X-7023839-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023839
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023839
    reference: chr 0
allele count: 2
allele frequency: 2.59878636676672e-5
allele num: 76959
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.102T>C
  hgvsp: ENST00000381077.5:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.102T>C
  hgvsp: ENST00000486446.2:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.102T>C
  hgvsp: ENST00000540122.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.171T>C
  hgvsp: ENST00000424830.2:c.171T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.141T>C
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.102T>C
  hgvsp: ENST00000412827.2:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19781
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Cys57Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

X-7023840-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023840
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023840
    reference: chr 0
allele count: 1
allele frequency: 1.300897619357357e-5
allele num: 76870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.101G>T
  hgvsp: ENSP00000430995.1:p.Cys34Phe
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.101G>T
  hgvsp: ENSP00000406260.2:p.Cys34Phe
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.101G>T
  hgvsp: ENSP00000441208.1:p.Cys34Phe
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.170G>T
  hgvsp: ENSP00000396452.2:p.Cys57Phe
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.140G>T
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.101G>T
  hgvsp: ENSP00000370467.5:p.Cys34Phe
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19492
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 616
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29216
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys57Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-7023859-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023859
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023859
    reference: chr 0
allele count: 3
allele frequency: 4.003149143993274e-5
allele num: 74941
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.82G>C
  hgvsp: ENSP00000370467.5:p.Val28Leu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.82G>C
  hgvsp: ENSP00000441208.1:p.Val28Leu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.82G>C
  hgvsp: ENSP00000430995.1:p.Val28Leu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.82G>C
  hgvsp: ENSP00000406260.2:p.Val28Leu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.151G>C
  hgvsp: ENSP00000396452.2:p.Val51Leu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.121G>C
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9864
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1301
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genotype depth: GenotypeDepth
  all individuals: 421
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genotype depth: GenotypeDepth
  all individuals: 3692
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 339
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 100
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 100
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genotype depth: GenotypeDepth
  all individuals: 112
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genotype quality: GenotypeQuality
  all individuals: 2271
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genotype quality: GenotypeQuality
  all individuals: 887
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 353
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genotype quality: GenotypeQuality
  all individuals: 422
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genotype quality: GenotypeQuality
  all individuals: 283
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genotype quality: GenotypeQuality
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22585
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val51Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

X-7023869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023869
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023869
    reference: chr 0
allele count: 1
allele frequency: 1.3652249890782e-5
allele num: 73248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.72G>A
  hgvsp: ENST00000412827.2:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.111G>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.72G>A
  hgvsp: ENST00000381077.5:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.72G>A
  hgvsp: ENST00000486446.2:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.141G>A
  hgvsp: ENST00000424830.2:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.72G>A
  hgvsp: ENST00000540122.1:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
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genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 2.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 355
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 282
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genotype quality: GenotypeQuality
  all individuals: 473
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg47Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

X-7023871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023871
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023871
    reference: chr 0
allele count: 1
allele frequency: 1.376936316695353e-5
allele num: 72625
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.139C>T
  hgvsp: ENSP00000396452.2:p.Arg47Trp
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.70C>T
  hgvsp: ENSP00000441208.1:p.Arg24Trp
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.70C>T
  hgvsp: ENSP00000406260.2:p.Arg24Trp
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.70C>T
  hgvsp: ENSP00000430995.1:p.Arg24Trp
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.70C>T
  hgvsp: ENSP00000370467.5:p.Arg24Trp
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.109C>T
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9299
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
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genotype depth: GenotypeDepth
  all individuals: 10400
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7994
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3535
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg47Trp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-7023878-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24007023878
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24007023878
    reference: chr 0
allele count: 1
allele frequency: 1.486303711300367e-5
allele num: 67281
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000441208
  ensembl transcript: ENST00000540122
  gene symbol: HDHD1
  hgvsc: ENST00000540122.1:c.63T>A
  hgvsp: ENSP00000441208.1:p.Asp21Glu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000430995
  ensembl transcript: ENST00000486446
  gene symbol: HDHD1
  hgvsc: ENST00000486446.2:c.63T>A
  hgvsp: ENSP00000430995.1:p.Asp21Glu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000406260
  ensembl transcript: ENST00000412827
  gene symbol: HDHD1
  hgvsc: ENST00000412827.2:c.63T>A
  hgvsp: ENSP00000406260.2:p.Asp21Glu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000396452
  ensembl transcript: ENST00000424830
  gene symbol: HDHD1
  hgvsc: ENST00000424830.2:c.132T>A
  hgvsp: ENSP00000396452.2:p.Asp44Glu
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130021
  ensembl transcript: ENST00000498474
  gene symbol: HDHD1
  hgvsc: ENST00000498474.2:n.102T>A
  variant of: http://identifiers.org/hgnc/16818
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130021
  ensembl protein: ENSP00000370467
  ensembl transcript: ENST00000381077
  gene symbol: HDHD1
  hgvsc: ENST00000381077.5:c.63T>A
  hgvsp: ENSP00000370467.5:p.Asp21Glu
  variant of: http://identifiers.org/hgnc/16818
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Asp44Glu
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 4088
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 809
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.538586515028432e-5
allele num: 39392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5469
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7203
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 505
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.296856e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.08e0

VQSLOD
type: SiteQuality
SIO_000300: -1.313e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

FS
type: SiteQuality
SIO_000300: 1.901e0

QD
type: SiteQuality
SIO_000300: 1.199e1

GenotypeQuality
all individuals: 13920
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4093
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2491
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7249
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3579
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.804402742692169e-4
allele num: 5542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 509
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.493e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 1.315483e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

MQRankSum
type: SiteQuality
SIO_000300: -1.172e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.312e0

VQSLOD
type: SiteQuality
SIO_000300: -2.285e0

QD
type: SiteQuality
SIO_000300: 1.977e1

GenotypeQuality
all individuals: 487
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4727
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4134
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 575
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.135460429204042e-4
allele num: 8807
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4013
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44819
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.495983e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 1.075e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

QD
type: SiteQuality
SIO_000300: 2.177e1

VQSLOD
type: SiteQuality
SIO_000300: -1.7e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36035
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 575
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.131221719457014e-4
allele num: 8840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4027
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8577
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44968
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.501669e6

VQSLOD
type: SiteQuality
SIO_000300: -5.147e-1

MQ
type: SiteQuality
SIO_000300: 5.834e1

QD
type: SiteQuality
SIO_000300: 3.031e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

GenotypeQuality
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8711
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.192549716064812e-5
allele num: 45609
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4109
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.649999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.424e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.467e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.326e1

DP
type: SiteQuality
SIO_000300: 1.523406e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.39e-1

GenotypeQuality
all individuals: 1427
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 227
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 897
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33438
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4058
bin: 9.75e1
variant carriers: 32

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4052
num of homozygotes: 0

African
type: Population
allele count: 38
allele frequency: 4.947916666666666e-3
allele num: 7680
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.145869141744013e-4
allele num: 8727
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6277
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9104
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.374e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 1.111e0

QD
type: SiteQuality
SIO_000300: 1.695e1

DP
type: SiteQuality
SIO_000300: 1.546407e6

VQSLOD
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 1316
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6059
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4035
bin: 9.75e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.146131805157593e-4
allele num: 8725
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7683
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4061
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9117
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.765394223605206e-5
allele num: 45634
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.543955e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.927e0

MQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

FS
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.16e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 2.758e1

GenotypeQuality
all individuals: 895
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 350
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32872
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4035
bin: 9.75e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45690
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.094690749863164e-4
allele num: 9135
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8717
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4067
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.273277096928219e-3
allele num: 6283
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.306e0

DP
type: SiteQuality
SIO_000300: 1.53638e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

FS
type: SiteQuality
SIO_000300: 4.095e0

QD
type: SiteQuality
SIO_000300: 1.56e1

GenotypeQuality
all individuals: 1272
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4360
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.50759219088937e-5
allele num: 46100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8805
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4113
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.740085321535788e-4
allele num: 6329
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.594033722438392e-4
allele num: 7710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9247
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.531614e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

QD
type: SiteQuality
SIO_000300: 1.555e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.46e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

GenotypeQuality
all individuals: 128
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4499
bin: 6.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1526
bin: 7.75e1
variant carriers: 19

GenotypeQuality
all individuals: 380
bin: 5.75e1
variant carriers: 21

GenotypeQuality
all individuals: 930
bin: 2.75e1
variant carriers: 7

African
type: Population
allele count: 16
allele frequency: 2.069054700633648e-3
allele num: 7733
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.724409448818898e-4
allele num: 6350
num of homozygotes: 0

South Asian
type: Population
allele count: 193
allele frequency: 2.073262434203459e-2
allele num: 9309
num of homozygotes: 5

Latino
type: Population
allele count: 28
allele frequency: 3.171007927519819e-3
allele num: 8830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.689596910451364e-3
allele num: 4143
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 1.176470588235294e-2
allele num: 595
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 456
allele frequency: 9.856688930678944e-3
allele num: 46263
num of homozygotes: 2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.474e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

DP
type: SiteQuality
SIO_000300: 1.553999e6

VQSLOD
type: SiteQuality
SIO_000300: 3.824e1

QD
type: SiteQuality
SIO_000300: 1.799e1

FS
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

GenotypeQuality
all individuals: 1041
bin: 3.25e1
variant carriers: 541

GenotypeQuality
all individuals: 1112
bin: 7.75e1
variant carriers: 509

GenotypeQuality
all individuals: 14251
bin: 9.75e1
variant carriers: 13302

GenotypeQuality
all individuals: 1014
bin: 7.25e1
variant carriers: 383

GenotypeQuality
all individuals: 740
bin: 4.25e1
variant carriers: 465

GenotypeQuality
all individuals: 507
bin: 9.25e1
variant carriers: 330

Other
type: Population
allele count: 147
allele frequency: 2.462311557788945e-1
allele num: 597
num of homozygotes: 13

European (Non-Finnish)
type: Population
allele count: 11222
allele frequency: 2.401814951950859e-1
allele num: 46723
num of homozygotes: 930

East Asian
type: Population
allele count: 2048
allele frequency: 3.199500078112795e-1
allele num: 6401
num of homozygotes: 238

South Asian
type: Population
allele count: 3390
allele frequency: 3.500981100898482e-1
allele num: 9683
num of homozygotes: 236

African
type: Population
allele count: 779
allele frequency: 1.005550535691235e-1
allele num: 7747
num of homozygotes: 33

European (Finnish)
type: Population
allele count: 910
allele frequency: 2.166666666666667e-1
allele num: 4200
num of homozygotes: 59

Latino
type: Population
allele count: 4393
allele frequency: 4.912221849491222e-1
allele num: 8943
num of homozygotes: 900

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.846834e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.517e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.906e1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

QD
type: SiteQuality
SIO_000300: 1.826e1

GenotypeQuality
all individuals: 1014
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14251
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 968
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.140273526956745e-5
allele num: 46723
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7747
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9683
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6401
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8943
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.906e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.517e-1

QD
type: SiteQuality
SIO_000300: 1.826e1

DP
type: SiteQuality
SIO_000300: 1.846834e6

GenotypeQuality
all individuals: 760
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30341
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9155
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4285
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9669
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.239443784975411e-5
allele num: 47176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6503
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.787042e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 2.051e0

QD
type: SiteQuality
SIO_000300: 1.95e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.88e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.540999999999999e-1

GenotypeQuality
all individuals: 751
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1058
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6501
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.484151383441111e-4
allele num: 47165
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9663
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4289
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.788284e6

FS
type: SiteQuality
SIO_000300: 1.233e0

QD
type: SiteQuality
SIO_000300: 1.359e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.74e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

GenotypeQuality
all individuals: 1230
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11249
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7777
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.658374792703151e-3
allele num: 603
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6505
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9159
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 17
allele frequency: 3.95993477754484e-3
allele num: 4293
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9673
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.483239394838327e-4
allele num: 47194
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.789496e6

QD
type: SiteQuality
SIO_000300: 1.747e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.203e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9693
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.535862386730149e-4
allele num: 6511
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4313
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9172
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.552e0

FS
type: SiteQuality
SIO_000300: 5.502e0

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

DP
type: SiteQuality
SIO_000300: 1.794348e6

VQSLOD
type: SiteQuality
SIO_000300: 7.61e-1

QD
type: SiteQuality
SIO_000300: 1.419e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11243
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1213
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.348265865374442e-5
allele num: 47257
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9693
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9169
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.46e-1

FS
type: SiteQuality
SIO_000300: 2.561e0

MQ
type: SiteQuality
SIO_000300: 5.859e1

QD
type: SiteQuality
SIO_000300: 2.219e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.794516e6

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: -1.967e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.095e0

GenotypeQuality
all individuals: 15091
bin: 9.75e1
variant carriers: 14337

GenotypeQuality
all individuals: 306
bin: 1.75e1
variant carriers: 265

GenotypeQuality
all individuals: 331
bin: 7.5e0
variant carriers: 227

GenotypeQuality
all individuals: 281
bin: 2.5e0
variant carriers: 207

GenotypeQuality
all individuals: 30147
bin: 6.25e1
variant carriers: 750

GenotypeQuality
all individuals: 676
bin: 3.25e1
variant carriers: 464

Latino
type: Population
allele count: 4495
allele frequency: 4.983922829581994e-1
allele num: 9019
num of homozygotes: 929

Other
type: Population
allele count: 151
allele frequency: 2.5e-1
allele num: 604
num of homozygotes: 14

African
type: Population
allele count: 1412
allele frequency: 1.807013053493729e-1
allele num: 7814
num of homozygotes: 107

European (Finnish)
type: Population
allele count: 965
allele frequency: 2.247321844434094e-1
allele num: 4294
num of homozygotes: 60

South Asian
type: Population
allele count: 3419
allele frequency: 3.510627374473765e-1
allele num: 9739
num of homozygotes: 239

East Asian
type: Population
allele count: 2053
allele frequency: 3.1864038491386e-1
allele num: 6443
num of homozygotes: 236

European (Non-Finnish)
type: Population
allele count: 12015
allele frequency: 2.559923298178332e-1
allele num: 46935
num of homozygotes: 1047

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.044e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.383e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.930384e6

VQSLOD
type: SiteQuality
SIO_000300: 3.666e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

QD
type: SiteQuality
SIO_000300: 1.805e1

GenotypeQuality
all individuals: 658
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8873
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46301
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6389
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.086130118388183e-4
allele num: 9207
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.066e-1

QD
type: SiteQuality
SIO_000300: 2.66e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.450831e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

GenotypeQuality
all individuals: 403
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 524
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4699
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 9.75e1
variant carriers: 11

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4115
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7727
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6341
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.87534473248759e-3
allele num: 9065
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

DP
type: SiteQuality
SIO_000300: 1.42876e6

FS
type: SiteQuality
SIO_000300: 3.024e0

QD
type: SiteQuality
SIO_000300: 2.196e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.47e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4566
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.193271044435671e-5
allele num: 45594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4063
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8962
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.228e1

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.342e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.34e-1

DP
type: SiteQuality
SIO_000300: 1.407532e6

GenotypeQuality
all individuals: 925
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45357
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.300897619357356e-4
allele num: 7687
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6277
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8872
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.256e-1

FS
type: SiteQuality
SIO_000300: 6.204e0

QD
type: SiteQuality
SIO_000300: 1.821e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

DP
type: SiteQuality
SIO_000300: 1.392471e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.633658151171978e-4
allele num: 7594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8457
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.329142e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.491e0

QD
type: SiteQuality
SIO_000300: 1.581e1

MQRankSum
type: SiteQuality
SIO_000300: -5.47e-1

FS
type: SiteQuality
SIO_000300: 4.689e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 561
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7583
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8423
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.349900129244507e-4
allele num: 8511
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.125e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.212e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 1.320318e6

FS
type: SiteQuality
SIO_000300: 2.419e0

QD
type: SiteQuality
SIO_000300: 2.289e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7573
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3893
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.042408897730355e-5
allele num: 44236
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 561
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6137
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8399
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

FS
type: SiteQuality
SIO_000300: 5.31e0

DP
type: SiteQuality
SIO_000300: 1.313565e6

QD
type: SiteQuality
SIO_000300: 2.289e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7483
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.447381302006853e-4
allele num: 8172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3765
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43206
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.65892501658925e-4
allele num: 6028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.344e0

FS
type: SiteQuality
SIO_000300: 3.014e0

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

DP
type: SiteQuality
SIO_000300: 1.250974e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 2.037e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7483
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3765
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43206
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.671071953010279e-4
allele num: 8172
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.014e0

VQSLOD
type: SiteQuality
SIO_000300: -1.344e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.45e-1

DP
type: SiteQuality
SIO_000300: 1.250974e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

QD
type: SiteQuality
SIO_000300: 2.037e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7449
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3743
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42909
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 541
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.549e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.229176e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
SIO_000300: 2.323e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7752
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41335
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 2.799552071668533e-4
allele num: 3572
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.651e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.239e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.537e1

FS
type: SiteQuality
SIO_000300: 9.488e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

DP
type: SiteQuality
SIO_000300: 1.132687e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3483
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 506
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Latino
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.460266692909511e-5
allele num: 40646
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 7059
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 39270
num of homozygotes: 0

East Asian
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allele frequency: 2.02020202020202e-3
allele num: 5445
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Latino
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allele frequency: 1.374948439433521e-4
allele num: 7273
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Other
type: Population
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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African
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allele frequency: 1.343684681994625e-3
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Latino
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allele frequency: 1.577287066246057e-4
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European (Finnish)
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South Asian
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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QD
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MQ
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 6673
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Other
type: Population
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
SIO_000300: -6.991000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 5.662e1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 1.747e1

DP
type: SiteQuality
SIO_000300: 8.44561e5

FS
type: SiteQuality
SIO_000300: 3.123e0

GenotypeQuality
all individuals: 6659
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.874223959530927e-5
allele num: 34792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6173
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4701
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5745
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2857
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.34073e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

VQSLOD
type: SiteQuality
SIO_000300: -1.879e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 5.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

GenotypeQuality
all individuals: 1354
bin: 4.25e1
variant carriers: 603

GenotypeQuality
all individuals: 1222
bin: 5.25e1
variant carriers: 682

GenotypeQuality
all individuals: 445
bin: 7.75e1
variant carriers: 277

GenotypeQuality
all individuals: 316
bin: 7.25e1
variant carriers: 197

GenotypeQuality
all individuals: 386
bin: 8.25e1
variant carriers: 251

European (Non-Finnish)
type: Population
allele count: 11586
allele frequency: 3.587552252670692e-1
allele num: 32295
num of homozygotes: 1497

African
type: Population
allele count: 2748
allele frequency: 4.284377923292797e-1
allele num: 6414
num of homozygotes: 499

South Asian
type: Population
allele count: 2572
allele frequency: 4.841867469879518e-1
allele num: 5312
num of homozygotes: 289

European (Finnish)
type: Population
allele count: 876
allele frequency: 3.291995490417137e-1
allele num: 2661
num of homozygotes: 103

Other
type: Population
allele count: 156
allele frequency: 3.969465648854962e-1
allele num: 393
num of homozygotes: 25

Latino
type: Population
allele count: 783
allele frequency: 1.408780136739834e-1
allele num: 5558
num of homozygotes: 55

East Asian
type: Population
allele count: 1348
allele frequency: 3.132698117592377e-1
allele num: 4303
num of homozygotes: 164

FS
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 8.09412e5

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.908e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.147e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.433e0

QD
type: SiteQuality
SIO_000300: 2.369e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2352
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3547
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.424830261881668e-4
allele num: 4124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.106270274709481e-5
allele num: 24353
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2572
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 5.562766549230484e-4
allele num: 5393
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.232e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.26515e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.79e-2

GenotypeQuality
all individuals: 326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8487
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 217
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4097
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2581
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2636
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

FS
type: SiteQuality
SIO_000300: 3.746e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQRankSum
type: SiteQuality
SIO_000300: -8.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.404e0

DP
type: SiteQuality
SIO_000300: 7.30588e5

VQSLOD
type: SiteQuality
SIO_000300: -2.789e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.733e0

QD
type: SiteQuality
SIO_000300: 5.16e0

GenotypeQuality
all individuals: 913
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8633
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3973
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 293
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2587
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3561
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

VQSLOD
type: SiteQuality
SIO_000300: -3.083e0

MQRankSum
type: SiteQuality
SIO_000300: 7.73e-1

DP
type: SiteQuality
SIO_000300: 7.46605e5

QD
type: SiteQuality
SIO_000300: 2.879e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3934
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2939
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28527
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5301
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e0

DP
type: SiteQuality
SIO_000300: 9.26216e5

VQSLOD
type: SiteQuality
SIO_000300: -3.165e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

QD
type: SiteQuality
SIO_000300: 3.19e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

FS
type: SiteQuality
SIO_000300: 1.771e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

GenotypeQuality
all individuals: 800
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2750
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.640958319658681e-4
allele num: 6094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2987
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5509
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29359
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4331
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.48085e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

FS
type: SiteQuality
SIO_000300: 2.217e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.286e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

QD
type: SiteQuality
SIO_000300: 1.424e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

GenotypeQuality
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23921
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 492
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3133
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4675
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4065
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.176922832544397e-5
allele num: 31477
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.377e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

FS
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -2.171e0

DP
type: SiteQuality
SIO_000300: 1.004344e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

QD
type: SiteQuality
SIO_000300: 3.203e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 325
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2396
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31789
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.572079861656972e-4
allele num: 6361
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6145
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 399
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4205
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.035e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.066e0

DP
type: SiteQuality
SIO_000300: 1.014766e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.422e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.725e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: -3.808e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

QD
type: SiteQuality
SIO_000300: 2.894e1

GenotypeQuality
all individuals: 2404
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 318
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6977
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34989
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3379
num of homozygotes: 0

East Asian
type: Population
allele count: 20
allele frequency: 3.85579332947754e-3
allele num: 5187
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5051
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6743
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 447
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.018e-1

FS
type: SiteQuality
SIO_000300: 1.1942e1

DP
type: SiteQuality
SIO_000300: 1.09852e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.354e0

QD
type: SiteQuality
SIO_000300: 1.744e1

GenotypeQuality
all individuals: 1164
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 658
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 22227
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1858
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 489
bin: 4.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 8.77963125548727e-4
allele num: 35309
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 1.151852562871952e-3
allele num: 5209
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.415828967860682e-4
allele num: 7063
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3393
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.479071143321994e-4
allele num: 6761
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5231
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.669e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

FS
type: SiteQuality
SIO_000300: 5.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

DP
type: SiteQuality
SIO_000300: 1.109468e6

GenotypeQuality
all individuals: 1015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23549
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 459
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.775773052795203e-5
allele num: 36026
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.461988304093567e-4
allele num: 6840
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -1.801e-1

QD
type: SiteQuality
SIO_000300: 7.94e0

DP
type: SiteQuality
SIO_000300: 1.127213e6

MQ
type: SiteQuality
SIO_000300: 5.893e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

GenotypeQuality
all individuals: 1092
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2733
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5371
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36265
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6853
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7303
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

FS
type: SiteQuality
SIO_000300: 8.704000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.566e1

VQSLOD
type: SiteQuality
SIO_000300: -1.301e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.134938e6

GenotypeQuality
all individuals: 1709
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24431
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3479
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5399
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.737251252292448e-5
allele num: 36533
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.361470388019061e-4
allele num: 7345
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 461
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5687
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.74e-1

QD
type: SiteQuality
SIO_000300: 3.45e0

VQSLOD
type: SiteQuality
SIO_000300: -2.514e0

DP
type: SiteQuality
SIO_000300: 1.142857e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.896e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

GenotypeQuality
all individuals: 805
bin: 7.75e1
variant carriers: 377

GenotypeQuality
all individuals: 1380
bin: 5.25e1
variant carriers: 974

GenotypeQuality
all individuals: 810
bin: 7.5e0
variant carriers: 209

GenotypeQuality
all individuals: 748
bin: 1.75e1
variant carriers: 380

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 157

GenotypeQuality
all individuals: 16886
bin: 6.25e1
variant carriers: 708

GenotypeQuality
all individuals: 376
bin: 9.25e1
variant carriers: 231

GenotypeQuality
all individuals: 1631
bin: 2.75e1
variant carriers: 496

Latino
type: Population
allele count: 4353
allele frequency: 5.337175085826386e-1
allele num: 8156
num of homozygotes: 905

African
type: Population
allele count: 765
allele frequency: 1.089433209911706e-1
allele num: 7022
num of homozygotes: 33

East Asian
type: Population
allele count: 1995
allele frequency: 3.469565217391304e-1
allele num: 5750
num of homozygotes: 238

European (Non-Finnish)
type: Population
allele count: 10790
allele frequency: 2.76957827459637e-1
allele num: 38959
num of homozygotes: 917

European (Finnish)
type: Population
allele count: 916
allele frequency: 2.508214676889376e-1
allele num: 3652
num of homozygotes: 58

South Asian
type: Population
allele count: 3069
allele frequency: 4.391186149663757e-1
allele num: 6989
num of homozygotes: 237

Other
type: Population
allele count: 142
allele frequency: 2.857142857142857e-1
allele num: 497
num of homozygotes: 13

BaseQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

QD
type: SiteQuality
SIO_000300: 2.055e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.417302e6

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.816e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.422e-1

FS
type: SiteQuality
SIO_000300: 1.227e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

GenotypeQuality
all individuals: 455
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7421
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.467977985636368e-5
allele num: 40519
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7177
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5927
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 511
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.025e1

MQ
type: SiteQuality
SIO_000300: 5.883e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.835e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.262889e6

GenotypeQuality
all individuals: 1177
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3642
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 982
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3795
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5941
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7535
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.554784057769754e-4
allele num: 7201
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.62e-1

FS
type: SiteQuality
SIO_000300: 5.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.274544e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.31e-1

GenotypeQuality
all individuals: 201
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7255
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3825
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5963
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 521
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41239
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8467
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.280245807194981e-4
allele num: 7811
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.294687e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.178e0

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.613e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

GenotypeQuality
all individuals: 640
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12851
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 980
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30045
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 521
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.419491422902906e-5
allele num: 41331
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5967
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7873
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.323e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 6.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

DP
type: SiteQuality
SIO_000300: 1.29886e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7327
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5997
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8059
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 525
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.395611240207939e-5
allele num: 41743
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.78e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

QD
type: SiteQuality
SIO_000300: 1.806e1

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.76e-1

DP
type: SiteQuality
SIO_000300: 1.307167e6

GenotypeQuality
all individuals: 675
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3696
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.366493577480186e-4
allele num: 7318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8057
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41712
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.461e0

VQSLOD
type: SiteQuality
SIO_000300: 8.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.304507e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 2.938e0

QD
type: SiteQuality
SIO_000300: 9.09e0

GenotypeQuality
all individuals: 3692
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12185
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 531
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.375466185238853e-5
allele num: 42097
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6013
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

DP
type: SiteQuality
SIO_000300: 1.311878e6

VQSLOD
type: SiteQuality
SIO_000300: -2.692e-1

QD
type: SiteQuality
SIO_000300: 3.076e1

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3678
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 533
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8237
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3905
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.3767082590612e-5
allele num: 42075
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.310739e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.614e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.73e-1

QD
type: SiteQuality
SIO_000300: 3.027e1

GenotypeQuality
all individuals: 1896
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3643
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6025
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.516174402250352e-4
allele num: 8532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8271
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 533
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7381
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.384e1

FS
type: SiteQuality
SIO_000300: 4.291e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

DP
type: SiteQuality
SIO_000300: 1.311938e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 2001
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28814
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3939
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 533
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.36860181434899e-5
allele num: 42219
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.403e0

DP
type: SiteQuality
SIO_000300: 1.3165e6

MQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

FS
type: SiteQuality
SIO_000300: 7.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.04e-1

QD
type: SiteQuality
SIO_000300: 2.34e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1275
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3633
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 940
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.195743154370441e-4
allele num: 8363
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 541
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.344266702513779e-4
allele num: 7439
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3972
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.901e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-2

DP
type: SiteQuality
SIO_000300: 1.328185e6

GenotypeQuality
all individuals: 1393
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11060
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8429
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6085
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.324770428920144e-5
allele num: 43015
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8591
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4013
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.352333e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

FS
type: SiteQuality
SIO_000300: 7.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

QD
type: SiteQuality
SIO_000300: 1.023e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e-1

GenotypeQuality
all individuals: 142
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3694
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11055
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.636661211129296e-4
allele num: 6110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8603
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43279
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

DP
type: SiteQuality
SIO_000300: 1.359248e6

MQRankSum
type: SiteQuality
SIO_000300: -8.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.327e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

QD
type: SiteQuality
SIO_000300: 1.132e1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13307
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33284
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42975
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.336183858898984e-4
allele num: 7484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4027
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 1.6586e1

VQSLOD
type: SiteQuality
SIO_000300: -2.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.135e0

QD
type: SiteQuality
SIO_000300: 1.766e1

DP
type: SiteQuality
SIO_000300: 1.34649e6

MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

GenotypeQuality
all individuals: 299
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13329
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33609
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.673439379762064e-4
allele num: 7481
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6091
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 3.646e0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

QD
type: SiteQuality
SIO_000300: 1.568e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 1.346888e6

GenotypeQuality
all individuals: 381
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32114
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3463
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1873
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42815
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7471
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8465
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8493
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.646903820816864e-4
allele num: 6072
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.904e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.804e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-2

DP
type: SiteQuality
SIO_000300: 1.337921e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

FS
type: SiteQuality
SIO_000300: 1.122e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

QD
type: SiteQuality
SIO_000300: 9.44e0

GenotypeQuality
all individuals: 122
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32134
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8453
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4003
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6063
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.017e0

QD
type: SiteQuality
SIO_000300: 1.609e1

MQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

DP
type: SiteQuality
SIO_000300: 1.330277e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.812e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.74e-1

FS
type: SiteQuality
SIO_000300: 1.855e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 5.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31857
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 390
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 561
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.557452863749555e-4
allele num: 8433
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42663
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4001
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.94e-2

DP
type: SiteQuality
SIO_000300: 1.324095e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

FS
type: SiteQuality
SIO_000300: 3.891e0

VQSLOD
type: SiteQuality
SIO_000300: 2.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

QD
type: SiteQuality
SIO_000300: 2.209e1

GenotypeQuality
all individuals: 673
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 626
bin: 3.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 4.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7446
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.360717658168083e-4
allele num: 8472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4001
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8433
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.640766003328411e-4
allele num: 42663
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.7825311942959e-3
allele num: 561
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

VQSLOD
type: SiteQuality
SIO_000300: 2.58e-1

QD
type: SiteQuality
SIO_000300: 2.209e1

DP
type: SiteQuality
SIO_000300: 1.324095e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.94e-2

FS
type: SiteQuality
SIO_000300: 3.891e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

GenotypeQuality
all individuals: 614
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15040
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6047
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8427
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.321412e6

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

QD
type: SiteQuality
SIO_000300: 2.196e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeQuality
all individuals: 1539
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3289
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1871
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 29561
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16709
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42265
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 555
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.698691134799622e-4
allele num: 7411
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6009
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3971
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.923e1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.243e0

FS
type: SiteQuality
SIO_000300: 5.580000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.294645e6

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
all individuals: 1590
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3286
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
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variant carriers: 0

GenotypeQuality
all individuals: 17017
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8345
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7413
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.193317422434368e-4
allele num: 8380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.289796e6

VQSLOD
type: SiteQuality
SIO_000300: 3.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.182e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.017e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 740
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 345
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3897
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7294
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.115089514066496e-4
allele num: 5865
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 543
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.472e0

QD
type: SiteQuality
SIO_000300: 3.002e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

DP
type: SiteQuality
SIO_000300: 1.206569e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.421e0

FS
type: SiteQuality
SIO_000300: 3.985e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
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variant carriers: 0

GenotypeQuality
all individuals: 17562
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
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variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7877
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7933
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3827
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.393339835585899e-4
allele num: 7177
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5723
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40183
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.05e-1

DP
type: SiteQuality
SIO_000300: 1.151959e6

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.33e-1

FS
type: SiteQuality
SIO_000300: 8.451000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.759e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23314
bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16585
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.275510204081633e-4
allele num: 7840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39815
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3805
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7135
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

FS
type: SiteQuality
SIO_000300: 9.85e-1

DP
type: SiteQuality
SIO_000300: 1.138259e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

QD
type: SiteQuality
SIO_000300: 1.497e1