21-43708139-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708139
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708139
    reference: chr 21
allele count: 1
allele frequency: 8.303716743614441e-6
allele num: 120428
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1105T>C
  hgvsp: ENSP00000291524.4:p.Ser369Pro
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1298T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1147T>C
  hgvsp: ENSP00000339744.3:p.Ser383Pro
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1114T>C
  hgvsp: ENSP00000354995.2:p.Ser372Pro
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1114T>C
  hgvsp: ENSP00000381467.3:p.Ser372Pro
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1120T>C
  hgvsp: ENSP00000381475.2:p.Ser374Pro
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.202T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1438T>C
  hgvsp: ENSP00000343820.4:p.Ser480Pro
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1128T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1552T>C
  hgvsp: ENSP00000381464.1:p.Ser518Pro
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38189
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser372Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

21-43708148-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708148
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708148
    reference: chr 21
allele count: 1
allele frequency: 8.307993951780402e-6
allele num: 120366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+1G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+1G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+1G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+1G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+1G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1123G>T
  hgvsp: ENSP00000354995.2:p.Val375Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1447G>T
  hgvsp: ENSP00000343820.4:p.Val483Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1137G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1561G>T
  hgvsp: ENSP00000381464.1:p.Val521Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.211G>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
hgvs: n.1306+1G>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

21-43708163-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708163
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708163
    reference: chr 21
allele count: 3
allele frequency: 2.496006389776358e-5
allele num: 120192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1576C>T
  hgvsp: ENSP00000381464.1:p.Arg526Ter
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1138C>T
  hgvsp: ENSP00000354995.2:p.Arg380Ter
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1462C>T
  hgvsp: ENSP00000343820.4:p.Arg488Ter
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.226C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+16C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+16C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1152C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+16C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+16C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+16C>T
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg380Ter
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

21-43708164-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708164
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708164
    reference: chr 21
allele count: 2
allele frequency: 1.663035705376594e-5
allele num: 120262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.227G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1577G>A
  hgvsp: ENSP00000381464.1:p.Arg526Gln
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+17G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+17G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1463G>A
  hgvsp: ENSP00000343820.4:p.Arg488Gln
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+17G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1153G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1139G>A
  hgvsp: ENSP00000354995.2:p.Arg380Gln
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+17G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+17G>A
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg380Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/21-43708168-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708168
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708168
    reference: chr 21
allele count: 7
allele frequency: 5.81965713905655e-5
allele num: 120282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1467A>C
  hgvsp: ENSP00000343820.4:p.Leu489Phe
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+21A>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1581A>C
  hgvsp: ENSP00000381464.1:p.Leu527Phe
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.231A>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+21A>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1157A>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+21A>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1143A>C
  hgvsp: ENSP00000354995.2:p.Leu381Phe
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+21A>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+21A>C
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10478
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9722
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu381Phe
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

21-43708172-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708172
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708172
    reference: chr 21
allele count: 1
allele frequency: 8.315455104857889e-6
allele num: 120258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+25G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+25G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1161G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.235G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+25G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1585G>A
  hgvsp: ENSP00000381464.1:p.Gly529Arg
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1147G>A
  hgvsp: ENSP00000354995.2:p.Gly383Arg
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1471G>A
  hgvsp: ENSP00000343820.4:p.Gly491Arg
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+25G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+25G>A
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly383Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

21-43708173-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708173
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708173
    reference: chr 21
allele count: 1
allele frequency: 8.31766839119658e-6
allele num: 120226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+26G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+26G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+26G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1472G>C
  hgvsp: ENSP00000343820.4:p.Gly491Ala
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1586G>C
  hgvsp: ENSP00000381464.1:p.Gly529Ala
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1162G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+26G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+26G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1148G>C
  hgvsp: ENSP00000354995.2:p.Gly383Ala
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.236G>C
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly383Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

21-43708187-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708187
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708187
    reference: chr 21
allele count: 1
allele frequency: 8.315040244794785e-6
allele num: 120264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+40A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+4A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+40A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+4A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+40A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+4A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+4A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.250A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+40A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+40A>G
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1158+4A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

21-43708187-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708187
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708187
    reference: chr 21
allele count: 1
allele frequency: 8.315040244794785e-6
allele num: 120264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+40A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+4A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+4A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+40A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.250A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+4A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+40A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+40A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+40A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+4A>T
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1158+4A>T
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

21-43708189-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708189
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708189
    reference: chr 21
allele count: 5
allele frequency: 4.158419135381493e-5
allele num: 120238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+42G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.252G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+42G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+42G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+6G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+6G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+6G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+6G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+42G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+42G>A
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1158+6G>A
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

21-43708191-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708191
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708191
    reference: chr 21
allele count: 1
allele frequency: 8.313242996092776e-6
allele num: 120290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+8A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+8A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+44A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+8A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+44A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.254A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+44A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+8A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+44A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+44A>G
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1158+8A>G
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

21-43708197-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708197
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708197
    reference: chr 21
allele count: 1
allele frequency: 8.316008316008316e-6
allele num: 120250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+14C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+14C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.260C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+14C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+14C>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15901
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9723
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

21-43708198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708198
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708198
    reference: chr 21
allele count: 42
allele frequency: 3.490575446295004e-4
allele num: 120324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+51G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+51G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+15G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+15G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+51G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.261G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+15G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+51G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+51G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+15G>A
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7304
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7620
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

21-43708202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708202
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708202
    reference: chr 21
allele count: 8
allele frequency: 6.65059439687422e-5
allele num: 120290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+55C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+55C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+55C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+55C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.265C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+19C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+19C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+19C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+55C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+19C>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16025
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

21-43708205-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708205
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708205
    reference: chr 21
allele count: 1
allele frequency: 8.303303053954863e-6
allele num: 120434
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+22C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.268C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+22C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+58C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+22C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+58C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+58C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+22C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+58C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+58C>G
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16072
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

21-43708206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708206
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708206
    reference: chr 21
allele count: 1
allele frequency: 8.305785810395521e-6
allele num: 120398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+59C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+59C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+59C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+23C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.269C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+59C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+23C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+59C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+23C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+23C>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

21-43708208-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708208
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708208
    reference: chr 21
allele count: 1
allele frequency: 8.304406317992327e-6
allele num: 120418
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.271G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+61G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+61G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+25G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+61G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+61G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+61G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+25G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+25G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+25G>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

21-43708212-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708212
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708212
    reference: chr 21
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+29G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+65G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+65G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+29G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+65G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+29G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.275G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+65G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+65G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+29G>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

21-43708221-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708221
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708221
    reference: chr 21
allele count: 5
allele frequency: 4.148551325877004e-5
allele num: 120524
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+38C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+74C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+38C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.284C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+74C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+74C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+74C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+38C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+74C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+38C>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16161
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

21-43708222-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708222
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708222
    reference: chr 21
allele count: 6
allele frequency: 4.975949577044286e-5
allele num: 120580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+75G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+75G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+39G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+75G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.285G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+39G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+39G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+39G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+75G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+75G>A
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7550
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8096
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10302
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

21-43708229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708229
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708229
    reference: chr 21
allele count: 9
allele frequency: 7.458975634012929e-5
allele num: 120660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+46C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+82C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+46C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+82C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+46C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+82C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+82C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+46C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.292C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+82C>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39150
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

21-43708229-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708229
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708229
    reference: chr 21
allele count: 1
allele frequency: 8.28775070445881e-6
allele num: 120660
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+82C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.292C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+46C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+82C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+82C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+82C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+46C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+46C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+46C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+82C>G
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9720
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

21-43708230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708230
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708230
    reference: chr 21
allele count: 11
allele frequency: 9.112447603426281e-5
allele num: 120714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+47G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1155+83G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+47G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1128+83G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+47G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.293G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1306+83G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1122+83G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1113+83G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+47G>A
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10279
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

21-43708236-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708236
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708236
    reference: chr 21
allele count: 1
allele frequency: 8.27417299640901e-6
allele num: 120858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+53T>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+53T>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-85T>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-85T>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-85T>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+53T>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-85T>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.299T>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-85T>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+53T>A
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

21-43708240-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708240
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708240
    reference: chr 21
allele count: 1
allele frequency: 8.271982794275789e-6
allele num: 120890
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+57G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-81G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-81G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.303G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-81G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+57G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-81G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+57G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+57G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-81G>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

21-43708242-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708242
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708242
    reference: chr 21
allele count: 1
allele frequency: 8.269930532583527e-6
allele num: 120920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-79A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1482+59A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-79A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-79A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1172+59A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.305A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-79A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-79A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1158+59A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1596+59A>G
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

21-43708256-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708256
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708256
    reference: chr 21
allele count: 26
allele frequency: 2.149044501752298e-4
allele num: 120984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-65C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-65C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-65C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-65C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.319C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-65C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-65C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-65C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-65C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-65C>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16388
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8757
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6189
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10272
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

21-43708257-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708257
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708257
    reference: chr 21
allele count: 1
allele frequency: 8.26405302216419e-6
allele num: 121006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-64G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.320G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-64G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-64G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-64G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-64G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-64G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-64G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-64G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-64G>A
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16402
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

21-43708257-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708257
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708257
    reference: chr 21
allele count: 2
allele frequency: 1.652810604432838e-5
allele num: 121006
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-64G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-64G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-64G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.320G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-64G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-64G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-64G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-64G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-64G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-64G>C
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7545
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39672
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

21-43708260-CAAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708260
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708257
    reference: chr 21
allele count: 1
allele frequency: 8.260912665631299e-6
allele num: 121052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-57_1483-55delAAG
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-57_1129-55delAAG
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.327_329delAAG
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-57_1156-55delAAG
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-57_1123-55delAAG
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-57_1173-55delAAG
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-57_1307-55delAAG
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-57_1114-55delAAG
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-57_1597-55delAAG
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-57_1159-55delAAG
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16486
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: CAAG
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS

21-43708262-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708262
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708262
    reference: chr 21
allele count: 1
allele frequency: 8.258865892535638e-6
allele num: 121082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-59A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-59A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-59A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-59A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-59A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-59A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.325A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-59A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-59A>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-59A>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

21-43708271-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708271
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708271
    reference: chr 21
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.334C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-50C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-50C>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

21-43708272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708272
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708272
    reference: chr 21
allele count: 3
allele frequency: 2.476064707824365e-5
allele num: 121160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-49G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-49G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-49G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-49G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-49G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-49G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-49G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-49G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.335G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-49G>A
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16659
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

21-43708279-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708279
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708279
    reference: chr 21
allele count: 2
allele frequency: 1.649838315845047e-5
allele num: 121224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-42C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-42C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.342C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-42C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-42C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-42C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-42C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-42C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-42C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-42C>G
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7527
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

21-43708279-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708279
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708279
    reference: chr 21
allele count: 24
allele frequency: 1.979805979014057e-4
allele num: 121224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-42C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-42C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-42C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-42C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-42C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-42C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-42C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.342C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-42C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-42C>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9317
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7527
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9667
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

21-43708280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708280
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708280
    reference: chr 21
allele count: 222
allele frequency: 1.831229893590695e-3
allele num: 121230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-41G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-41G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-41G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-41G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.343G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-41G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-41G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-41G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-41G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-41G>A
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 4.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 4.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 16770
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 10297
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9320
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 3
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ

21-43708280-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708280
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708280
    reference: chr 21
allele count: 4
allele frequency: 3.299513321785036e-5
allele num: 121230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-41G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-41G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.343G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-41G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-41G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-41G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-41G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-41G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-41G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-41G>C
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9672
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS

21-43708285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708285
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708285
    reference: chr 21
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-36G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-36G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.348G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-36G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-36G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-36G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-36G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-36G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-36G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-36G>A
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

21-43708286-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708286
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708286
    reference: chr 21
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.349G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-35G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-35G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-35G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-35G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-35G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-35G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-35G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-35G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-35G>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

21-43708295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708295
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708295
    reference: chr 21
allele count: 6
allele frequency: 4.945843018942579e-5
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-26C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-26C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-26C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-26C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-26C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-26C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-26C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-26C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.358C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-26C>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16859
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41916
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

21-43708296-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708296
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708296
    reference: chr 21
allele count: 22
allele frequency: 1.813386086383119e-4
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-25G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.359G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-25G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-25G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-25G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-25G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-25G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-25G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-25G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-25G>A
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10337
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

21-43708299-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708299
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708299
    reference: chr 21
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-22C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-22C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-22C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-22C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-22C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-22C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-22C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-22C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.362C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-22C>G
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16887
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

21-43708306-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708306
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708306
    reference: chr 21
allele count: 2
allele frequency: 1.648125257519571e-5
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.369T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-15T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-15T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-15T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-15T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-15T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-15T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-15T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-15T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-15T>C
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9743
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

21-43708308-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708308
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708308
    reference: chr 21
allele count: 2
allele frequency: 1.648070932972955e-5
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-13C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-13C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-13C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-13C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-13C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-13C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.371C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-13C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-13C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-13C>T
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10358
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

21-43708309-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708309
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708309
    reference: chr 21
allele count: 3
allele frequency: 2.471984179301253e-5
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-12G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-12G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.372G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-12G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-12G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-12G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-12G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-12G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-12G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-12G>A
  variant of: http://identifiers.org/hgnc/73
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

21-43708313-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708313
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708313
    reference: chr 21
allele count: 4
allele frequency: 3.295978905735003e-5
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1483-8G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1173-8G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.376G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1114-8G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1159-8G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1156-8G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1597-8G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1307-8G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1123-8G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1129-8G>C
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1159-8G>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

21-43708326-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708326
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708326
    reference: chr 21
allele count: 5
allele frequency: 4.119566292060772e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1128C>T
  hgvsp: ENST00000398449.3:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1119C>T
  hgvsp: ENST00000347800.2:c.1119C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1602C>T
  hgvsp: ENST00000398437.1:c.1602C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1164C>T
  hgvsp: ENST00000361802.2:c.1164C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1312C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1134C>T
  hgvsp: ENST00000398457.2:c.1134C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1488C>T
  hgvsp: ENST00000340588.4:c.1488C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1161C>T
  hgvsp: ENST00000343687.3:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1178C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.389C>T
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser388Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

21-43708328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708328
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708328
    reference: chr 21
allele count: 4
allele frequency: 3.295653033648617e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1121C>T
  hgvsp: ENSP00000291524.4:p.Ser374Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1130C>T
  hgvsp: ENSP00000381467.3:p.Ser377Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1180C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1136C>T
  hgvsp: ENSP00000381475.2:p.Ser379Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1314C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1604C>T
  hgvsp: ENSP00000381464.1:p.Ser535Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1163C>T
  hgvsp: ENSP00000339744.3:p.Ser388Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1490C>T
  hgvsp: ENSP00000343820.4:p.Ser497Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.391C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1166C>T
  hgvsp: ENSP00000354995.2:p.Ser389Leu
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser389Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

21-43708329-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708329
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708329
    reference: chr 21
allele count: 28
allele frequency: 2.306881096757184e-4
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1164G>A
  hgvsp: ENST00000343687.3:c.1164G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1315G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1605G>A
  hgvsp: ENST00000398437.1:c.1605G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1122G>A
  hgvsp: ENST00000347800.2:c.1122G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1167G>A
  hgvsp: ENST00000361802.2:c.1167G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1131G>A
  hgvsp: ENST00000398449.3:c.1131G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1137G>A
  hgvsp: ENST00000398457.2:c.1137G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1181G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.392G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1491G>A
  hgvsp: ENST00000340588.4:c.1491G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7546
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser389Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

21-43708337-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708337
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708337
    reference: chr 21
allele count: 10
allele frequency: 8.238453806989504e-5
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1172A>G
  hgvsp: ENSP00000339744.3:p.Glu391Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1130A>G
  hgvsp: ENSP00000291524.4:p.Glu377Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1499A>G
  hgvsp: ENSP00000343820.4:p.Glu500Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1145A>G
  hgvsp: ENSP00000381475.2:p.Glu382Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1323A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1175A>G
  hgvsp: ENSP00000354995.2:p.Glu392Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1613A>G
  hgvsp: ENSP00000381464.1:p.Glu538Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1139A>G
  hgvsp: ENSP00000381467.3:p.Glu380Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1189A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.400A>G
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10342
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9704
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu392Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

21-43708357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708357
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708357
    reference: chr 21
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1343G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1159G>A
  hgvsp: ENSP00000381467.3:p.Ala387Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1165G>A
  hgvsp: ENSP00000381475.2:p.Ala389Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1209G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1633G>A
  hgvsp: ENSP00000381464.1:p.Ala545Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1192G>A
  hgvsp: ENSP00000339744.3:p.Ala398Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1519G>A
  hgvsp: ENSP00000343820.4:p.Ala507Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1150G>A
  hgvsp: ENSP00000291524.4:p.Ala384Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1195G>A
  hgvsp: ENSP00000354995.2:p.Ala399Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.420G>A
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala399Thr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

21-43708360-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708360
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708360
    reference: chr 21
allele count: 3
allele frequency: 2.47161759132627e-5
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1636A>G
  hgvsp: ENSP00000381464.1:p.Ser546Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1168A>G
  hgvsp: ENSP00000381475.2:p.Ser390Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1522A>G
  hgvsp: ENSP00000343820.4:p.Ser508Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1198A>G
  hgvsp: ENSP00000354995.2:p.Ser400Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1153A>G
  hgvsp: ENSP00000291524.4:p.Ser385Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1195A>G
  hgvsp: ENSP00000339744.3:p.Ser399Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1346A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.423A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1162A>G
  hgvsp: ENSP00000381467.3:p.Ser388Gly
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1212A>G
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17050
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser400Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

21-43708362-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708362
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708362
    reference: chr 21
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1155C>T
  hgvsp: ENST00000347800.2:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1200C>T
  hgvsp: ENST00000361802.2:c.1200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1214C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1164C>T
  hgvsp: ENST00000398449.3:c.1164C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1638C>T
  hgvsp: ENST00000398437.1:c.1638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1170C>T
  hgvsp: ENST00000398457.2:c.1170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1348C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1197C>T
  hgvsp: ENST00000343687.3:c.1197C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.425C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1524C>T
  hgvsp: ENST00000340588.4:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser400Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

21-43708364-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708364
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708364
    reference: chr 21
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1640G>C
  hgvsp: ENSP00000381464.1:p.Cys547Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1350G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1172G>C
  hgvsp: ENSP00000381475.2:p.Cys391Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1166G>C
  hgvsp: ENSP00000381467.3:p.Cys389Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1526G>C
  hgvsp: ENSP00000343820.4:p.Cys509Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1202G>C
  hgvsp: ENSP00000354995.2:p.Cys401Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1216G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.427G>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1157G>C
  hgvsp: ENSP00000291524.4:p.Cys386Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1199G>C
  hgvsp: ENSP00000339744.3:p.Cys400Ser
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys401Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

21-43708370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708370
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708370
    reference: chr 21
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1172C>T
  hgvsp: ENSP00000381467.3:p.Thr391Met
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1646C>T
  hgvsp: ENSP00000381464.1:p.Thr549Met
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1208C>T
  hgvsp: ENSP00000354995.2:p.Thr403Met
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1356C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1532C>T
  hgvsp: ENSP00000343820.4:p.Thr511Met
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1178C>T
  hgvsp: ENSP00000381475.2:p.Thr393Met
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1163C>T
  hgvsp: ENSP00000291524.4:p.Thr388Met
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1222C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.433C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1205C>T
  hgvsp: ENSP00000339744.3:p.Thr402Met
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10344
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr403Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum

21-43708371-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708371
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708371
    reference: chr 21
allele count: 23
allele frequency: 1.895219103808566e-4
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1209G>A
  hgvsp: ENST00000361802.2:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1179G>A
  hgvsp: ENST00000398457.2:c.1179G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1164G>A
  hgvsp: ENST00000347800.2:c.1164G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1223G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1647G>A
  hgvsp: ENST00000398437.1:c.1647G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1533G>A
  hgvsp: ENST00000340588.4:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1206G>A
  hgvsp: ENST00000343687.3:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1173G>A
  hgvsp: ENST00000398449.3:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1357G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.434G>A
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17037
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr403Thr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

21-43708371-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708371
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708371
    reference: chr 21
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1164G>T
  hgvsp: ENST00000347800.2:c.1164G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1209G>T
  hgvsp: ENST00000361802.2:c.1209G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1223G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1357G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1173G>T
  hgvsp: ENST00000398449.3:c.1173G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1179G>T
  hgvsp: ENST00000398457.2:c.1179G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1533G>T
  hgvsp: ENST00000340588.4:c.1533G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1206G>T
  hgvsp: ENST00000343687.3:c.1206G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.434G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1647G>T
  hgvsp: ENST00000398437.1:c.1647G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr403Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

21-43708373-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708373
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708373
    reference: chr 21
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.436A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1175A>G
  hgvsp: ENSP00000381467.3:p.Gln392Arg
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1211A>G
  hgvsp: ENSP00000354995.2:p.Gln404Arg
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1535A>G
  hgvsp: ENSP00000343820.4:p.Gln512Arg
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1208A>G
  hgvsp: ENSP00000339744.3:p.Gln403Arg
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1181A>G
  hgvsp: ENSP00000381475.2:p.Gln394Arg
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1225A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1166A>G
  hgvsp: ENSP00000291524.4:p.Gln389Arg
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1359A>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1649A>G
  hgvsp: ENSP00000381464.1:p.Gln550Arg
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln404Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

21-43708376-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708376
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708376
    reference: chr 21
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1184T>C
  hgvsp: ENSP00000381475.2:p.Phe395Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1211T>C
  hgvsp: ENSP00000339744.3:p.Phe404Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1169T>C
  hgvsp: ENSP00000291524.4:p.Phe390Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1362T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.439T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1178T>C
  hgvsp: ENSP00000381467.3:p.Phe393Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1652T>C
  hgvsp: ENSP00000381464.1:p.Phe551Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1214T>C
  hgvsp: ENSP00000354995.2:p.Phe405Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1538T>C
  hgvsp: ENSP00000343820.4:p.Phe513Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1228T>C
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Phe405Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

21-43708383-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708383
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708383
    reference: chr 21
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1659C>T
  hgvsp: ENST00000398437.1:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1369C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1176C>T
  hgvsp: ENST00000347800.2:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1218C>T
  hgvsp: ENST00000343687.3:c.1218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1185C>T
  hgvsp: ENST00000398449.3:c.1185C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1191C>T
  hgvsp: ENST00000398457.2:c.1191C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1545C>T
  hgvsp: ENST00000340588.4:c.1545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1221C>T
  hgvsp: ENST00000361802.2:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1235C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.446C>T
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile407Ile
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

21-43708395-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708395
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708395
    reference: chr 21
allele count: 2
allele frequency: 1.648994937585542e-5
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1230G>T
  hgvsp: ENSP00000339744.3:p.Arg410Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1203G>T
  hgvsp: ENSP00000381475.2:p.Arg401Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1197G>T
  hgvsp: ENSP00000381467.3:p.Arg399Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1247G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1188G>T
  hgvsp: ENSP00000291524.4:p.Arg396Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.458G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1381G>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1233G>T
  hgvsp: ENSP00000354995.2:p.Arg411Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1671G>T
  hgvsp: ENSP00000381464.1:p.Arg557Ser
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1557G>T
  hgvsp: ENSP00000343820.4:p.Arg519Ser
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg411Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

21-43708397-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708397
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708397
    reference: chr 21
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1232C>T
  hgvsp: ENSP00000339744.3:p.Thr411Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1235C>T
  hgvsp: ENSP00000354995.2:p.Thr412Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1199C>T
  hgvsp: ENSP00000381467.3:p.Thr400Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1383C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1559C>T
  hgvsp: ENSP00000343820.4:p.Thr520Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1205C>T
  hgvsp: ENSP00000381475.2:p.Thr402Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1190C>T
  hgvsp: ENSP00000291524.4:p.Thr397Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1673C>T
  hgvsp: ENSP00000381464.1:p.Thr558Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.460C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1249C>T
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42095
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr412Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

21-43708399-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708399
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708399
    reference: chr 21
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1561T>A
  hgvsp: ENSP00000343820.4:p.Phe521Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1237T>A
  hgvsp: ENSP00000354995.2:p.Phe413Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1234T>A
  hgvsp: ENSP00000339744.3:p.Phe412Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1251T>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.462T>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1207T>A
  hgvsp: ENSP00000381475.2:p.Phe403Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1385T>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1675T>A
  hgvsp: ENSP00000381464.1:p.Phe559Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1192T>A
  hgvsp: ENSP00000291524.4:p.Phe398Ile
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1201T>A
  hgvsp: ENSP00000381467.3:p.Phe401Ile
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe413Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD

21-43708412-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708412
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708412
    reference: chr 21
allele count: 1
allele frequency: 8.271572260455268e-6
allele num: 120896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1205T>C
  hgvsp: ENSP00000291524.4:p.Met402Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1247T>C
  hgvsp: ENSP00000339744.3:p.Met416Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1398T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1688T>C
  hgvsp: ENSP00000381464.1:p.Met563Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1250T>C
  hgvsp: ENSP00000354995.2:p.Met417Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1264T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1574T>C
  hgvsp: ENSP00000343820.4:p.Met525Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.475T>C
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1220T>C
  hgvsp: ENSP00000381475.2:p.Met407Thr
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1214T>C
  hgvsp: ENSP00000381467.3:p.Met405Thr
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met417Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

21-43708419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708419
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708419
    reference: chr 21
allele count: 1
allele frequency: 8.483203257550051e-6
allele num: 117880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1221C>T
  hgvsp: ENST00000398449.3:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1695C>T
  hgvsp: ENST00000398437.1:c.1695C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1212C>T
  hgvsp: ENST00000347800.2:c.1212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1257C>T
  hgvsp: ENST00000361802.2:c.1257C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.482C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1227C>T
  hgvsp: ENST00000398457.2:c.1227C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1405C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1254C>T
  hgvsp: ENST00000343687.3:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1581C>T
  hgvsp: ENST00000340588.4:c.1581C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1271C>T
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9914
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp419Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

21-43708421-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708421
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708421
    reference: chr 21
allele count: 1
allele frequency: 8.59697386519945e-6
allele num: 116320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1256C>G
  hgvsp: ENSP00000339744.3:p.Ser419Trp
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1273C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1223C>G
  hgvsp: ENSP00000381467.3:p.Ser408Trp
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1697C>G
  hgvsp: ENSP00000381464.1:p.Ser566Trp
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1407C>G
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1229C>G
  hgvsp: ENSP00000381475.2:p.Ser410Trp
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1583C>G
  hgvsp: ENSP00000343820.4:p.Ser528Trp
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1259C>G
  hgvsp: ENSP00000354995.2:p.Ser420Trp
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1214C>G
  hgvsp: ENSP00000291524.4:p.Ser405Trp
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.484C>G
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser420Trp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

21-43708421-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708421
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708421
    reference: chr 21
allele count: 3
allele frequency: 2.579092159559835e-5
allele num: 116320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1229C>T
  hgvsp: ENSP00000381475.2:p.Ser410Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1259C>T
  hgvsp: ENSP00000354995.2:p.Ser420Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1697C>T
  hgvsp: ENSP00000381464.1:p.Ser566Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1407C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1223C>T
  hgvsp: ENSP00000381467.3:p.Ser408Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1214C>T
  hgvsp: ENSP00000291524.4:p.Ser405Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1273C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.484C>T
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1256C>T
  hgvsp: ENSP00000339744.3:p.Ser419Leu
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1583C>T
  hgvsp: ENSP00000343820.4:p.Ser528Leu
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17570
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10033
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser420Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-43708422-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708422
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708422
    reference: chr 21
allele count: 22
allele frequency: 1.923144165879926e-4
allele num: 114396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1215G>A
  hgvsp: ENST00000347800.2:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1224G>A
  hgvsp: ENST00000398449.3:c.1224G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1260G>A
  hgvsp: ENST00000361802.2:c.1260G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.485G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1257G>A
  hgvsp: ENST00000343687.3:c.1257G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1408G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1584G>A
  hgvsp: ENST00000340588.4:c.1584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1230G>A
  hgvsp: ENST00000398457.2:c.1230G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1274G>A
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1698G>A
  hgvsp: ENST00000398437.1:c.1698G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9855
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10230
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17578
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: c.1260G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

21-43708431-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43708431
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 43708432
    reference: chr 21
allele count: 42529
allele frequency: 3.562668587799688e-1
allele num: 119374
alternate allele: GC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000354995
  ensembl transcript: ENST00000361802
  gene symbol: ABCG1
  hgvsc: ENST00000361802.2:c.1260+12dupC
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000339744
  ensembl transcript: ENST00000343687
  gene symbol: ABCG1
  hgvsc: ENST00000343687.3:c.1257+12dupC
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381467
  ensembl transcript: ENST00000398449
  gene symbol: ABCG1
  hgvsc: ENST00000398449.3:c.1224+12dupC
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000343820
  ensembl transcript: ENST00000340588
  gene symbol: ABCG1
  hgvsc: ENST00000340588.4:c.1584+12dupC
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000462050
  gene symbol: ABCG1
  hgvsc: ENST00000462050.1:n.1408+12dupC
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000291524
  ensembl transcript: ENST00000347800
  gene symbol: ABCG1
  hgvsc: ENST00000347800.2:c.1215+12dupC
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000472587
  gene symbol: ABCG1
  hgvsc: ENST00000472587.1:n.1274+12dupC
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381464
  ensembl transcript: ENST00000398437
  gene symbol: ABCG1
  hgvsc: ENST00000398437.1:c.1698+12dupC
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl transcript: ENST00000496783
  gene symbol: ABCG1
  hgvsc: ENST00000496783.1:n.485+12dupC
  variant of: http://identifiers.org/hgnc/73
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160179
  ensembl protein: ENSP00000381475
  ensembl transcript: ENST00000398457
  gene symbol: ABCG1
  hgvsc: ENST00000398457.2:c.1230+12dupC
  variant of: http://identifiers.org/hgnc/73
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 1.25e1
  variant carriers: 455
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17421
  bin: 2.75e1
  variant carriers: 6468
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 374
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 3.75e1
  variant carriers: 5438
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.75e1
  variant carriers: 653
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 1.75e1
  variant carriers: 1819
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 4.25e1
  variant carriers: 3356
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.75e1
  variant carriers: 1871
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 10510
  bin: 3.25e1
  variant carriers: 6852
genotype depth: GenotypeDepth
  all individuals: 10554
  bin: 2.25e1
  variant carriers: 4497
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 5.25e1
  variant carriers: 1062
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 9.75e1
  variant carriers: 969
num of homozygotes: 7596
reference allele: G

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9769
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 2.082093e6

FS
type: SiteQuality
SIO_000300: 2.422e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.68e-1

QD
type: SiteQuality
SIO_000300: 1.14e1

GenotypeQuality
all individuals: 672
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2369
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9733
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37942
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505661286437003e-5
allele num: 66416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.712e0

FS
type: SiteQuality
SIO_000300: 7.182e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.52e0

DP
type: SiteQuality
SIO_000300: 2.07912e6

VQSLOD
type: SiteQuality
SIO_000300: -9.124e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.077e0

QD
type: SiteQuality
SIO_000300: 1.271e1

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9697
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37519
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012683397101799e-5
allele num: 66386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15694
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 2.076343e6

FS
type: SiteQuality
SIO_000300: 3.295e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.95e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9705
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 2.261e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.354e1

DP
type: SiteQuality
SIO_000300: 2.075768e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.545e0

GenotypeQuality
all individuals: 628
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 9.75e1
variant carriers: 7

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.054089868690519e-4
allele num: 66408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15756
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.15e0

FS
type: SiteQuality
SIO_000300: 1.468e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

MQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.509e1

DP
type: SiteQuality
SIO_000300: 2.075373e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9727
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2335
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66400
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.351626016260163e-5
allele num: 15744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.074766e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.892e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505978735580254e-5
allele num: 66402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15714
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e0

ReadPosRankSum
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SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 2.074244e6

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.205e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.075395e6

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 6.193e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.95e0

QD
type: SiteQuality
SIO_000300: 1.568e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.408e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 2.075395e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: -3.408e-1

FS
type: SiteQuality
SIO_000300: 6.193e0

QD
type: SiteQuality
SIO_000300: 1.568e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2332
bin: 9.75e1
variant carriers: 5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.531935406121957e-5
allele num: 66384
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.596e0

QD
type: SiteQuality
SIO_000300: 1.384e1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: -8.74e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-2

DP
type: SiteQuality
SIO_000300: 2.075228e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.659e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66392
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.164e-1

QD
type: SiteQuality
SIO_000300: 1.648e1

DP
type: SiteQuality
SIO_000300: 2.075638e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.336332530731213e-5
allele num: 15782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.765000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.626e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 35
allele frequency: 3.373168851195066e-3
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.458412588621823e-4
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.314725940894166e-5
allele num: 15836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.7e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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DP
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VQSLOD
type: SiteQuality
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MQ
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ClippingRankSum
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SIO_000300: 9.4e-2

MQRankSum
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QD
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SIO_000300: 1.439e1

ReadPosRankSum
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SIO_000300: 8.599999999999999e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2394
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GenotypeQuality
all individuals: 29
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66388
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 8
allele frequency: 5.060728744939271e-4
allele num: 15808
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Other
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allele frequency: 0.0e0
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VQSLOD
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MQRankSum
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.809e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.81e-2

QD
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SIO_000300: 1.906e1

MQ
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SIO_000300: 5.986e1

DP
type: SiteQuality
SIO_000300: 2.077526e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66412
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
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allele frequency: 6.28140703517588e-5
allele num: 15920
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 5.928e1

BaseQRankSum
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SIO_000300: -1.517e0

MQRankSum
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ReadPosRankSum
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DP
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FS
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InbreedingCoeff
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SIO_000300: 3.0e-4

QD
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ClippingRankSum
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SIO_000300: -1.054e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

QD
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 6.004e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.457e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.15e-1

VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 2.015e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.47e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66392
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

MQRankSum
type: SiteQuality
SIO_000300: 8.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.296e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 2.078631e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15964
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.203e1

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

FS
type: SiteQuality
SIO_000300: 6.657e0

DP
type: SiteQuality
SIO_000300: 2.07786e6

BaseQRankSum
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SIO_000300: -6.278e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.267e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506477854775535e-5
allele num: 66380
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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East Asian
type: Population
allele count: 2
allele frequency: 2.315886984715146e-4
allele num: 8636
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.2465719272002e-4
allele num: 16044
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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SIO_000300: 2.078634e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

African
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allele count: 4
allele frequency: 3.853564547206166e-4
allele num: 10380
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.506114826194349e-5
allele num: 66396
num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

MQRankSum
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VQSLOD
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FS
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DP
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 900
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East Asian
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African
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allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.038050191305396e-5
allele num: 66386
num of homozygotes: 0

South Asian
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InbreedingCoeff
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FS
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MQRankSum
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DP
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
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allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 1.985e0

DP
type: SiteQuality
SIO_000300: 2.081544e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.517391959042313e-5
allele num: 66410
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.107482047718323e-4
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.011e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.397e1

InbreedingCoeff
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SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.68e0

DP
type: SiteQuality
SIO_000300: 2.081267e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.082647e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.462e0

VQSLOD
type: SiteQuality
SIO_000300: -1.772e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.204e1

QD
type: SiteQuality
SIO_000300: 1.44e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66462
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.516e0

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

QD
type: SiteQuality
SIO_000300: 1.451e1

DP
type: SiteQuality
SIO_000300: 2.08313e6

VQSLOD
type: SiteQuality
SIO_000300: 3.2e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 485
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.11545988258317e-5
allele num: 16352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.083414e6

VQSLOD
type: SiteQuality
SIO_000300: -1.134e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

FS
type: SiteQuality
SIO_000300: 5.303e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

QD
type: SiteQuality
SIO_000300: 1.757e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 26

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.513857542655954e-5
allele num: 66462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

African
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allele count: 20
allele frequency: 1.92492781520693e-3
allele num: 10390
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.452e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 2.086039e6

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.13e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

DP
type: SiteQuality
SIO_000300: 2.085424e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
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allele num: 11568
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 16444
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009238361770636e-5
allele num: 66462
num of homozygotes: 0

Other
type: Population
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East Asian
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allele count: 0
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MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.22e-1

ReadPosRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

DP
type: SiteQuality
SIO_000300: 2.086495e6

QD
type: SiteQuality
SIO_000300: 1.445e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 6.158e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.087292e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 4.02e0

VQSLOD
type: SiteQuality
SIO_000300: 8.51e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.254e0

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.839e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.686e0

DP
type: SiteQuality
SIO_000300: 2.090332e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.3536e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 9.01e0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 185
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variant carriers: 0

GenotypeQuality
all individuals: 40978
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00543984612148e-5
allele num: 66546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
SIO_000300: 2.090976e6

QD
type: SiteQuality
SIO_000300: 1.48e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 509
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GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

FS
type: SiteQuality
SIO_000300: 5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 2.093246e6

GenotypeQuality
all individuals: 202
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 24

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41390
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variant carriers: 0

GenotypeQuality
all individuals: 2260
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.116605734077352e-3
allele num: 10394
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

FS
type: SiteQuality
SIO_000300: 5.39e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

DP
type: SiteQuality
SIO_000300: 2.093246e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

GenotypeQuality
all individuals: 192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
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GenotypeQuality
all individuals: 2243
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1152
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9672
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GenotypeQuality
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GenotypeQuality
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variant carriers: 218

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 41484
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 199
allele frequency: 2.302174919018973e-2
allele num: 8644
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.007268795242243e-5
allele num: 66586
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.848374061958822e-4
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.071666162685213e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.844961240310077e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.095154e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 58
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.007268795242243e-5
allele num: 66586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.39e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 2.095154e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 149
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 79
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 9733
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GenotypeQuality
all individuals: 399
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GenotypeQuality
all individuals: 2019
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GenotypeQuality
all individuals: 37
bin: 4.25e1
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 1160
bin: 8.25e1
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GenotypeQuality
all individuals: 2257
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.544e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.98e0

FS
type: SiteQuality
SIO_000300: 2.223e0

MQRankSum
type: SiteQuality
SIO_000300: -3.24e-1

DP
type: SiteQuality
SIO_000300: 2.093783e6

QD
type: SiteQuality
SIO_000300: 9.76e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.172e0

VQSLOD
type: SiteQuality
SIO_000300: 9.389999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.049e0

FS
type: SiteQuality
SIO_000300: 4.086e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.093816e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923076923076923e-4
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQRankSum
type: SiteQuality
SIO_000300: -1.159e0

DP
type: SiteQuality
SIO_000300: 2.095307e6

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.342e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 22

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.085402786190188e-4
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.000090000900009e-5
allele num: 66666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.91085003455425e-4
allele num: 11576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

QD
type: SiteQuality
SIO_000300: 1.138e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 1.869e0

DP
type: SiteQuality
SIO_000300: 2.095356e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.801e1

VQSLOD
type: SiteQuality
SIO_000300: -7.334000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

FS
type: SiteQuality
SIO_000300: 1.054e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.227e0

DP
type: SiteQuality
SIO_000300: 2.094907e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 1.6051e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.329e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

DP
type: SiteQuality
SIO_000300: 2.095501e6

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 389
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998500749625187e-5
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 4.159e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1995
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variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.998410842253606e-5
allele num: 66702
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.481e0

MQ
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1992
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variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.623208506703652e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
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allele num: 10400
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494454103963068e-5
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: 7.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 2.096372e6

MQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

FS
type: SiteQuality
SIO_000300: 3.035e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997781641585227e-5
allele num: 66716
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 908
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -8.42e-1

ClippingRankSum
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SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.746e0

MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.29e1

DP
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SIO_000300: 2.09649e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 28

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.538461538461538e-3
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.99538355466291e-5
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422774076317383e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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SIO_000300: -6.35e-1

BaseQRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 4.84e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 10
allele frequency: 8.638562543192813e-4
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

DP
type: SiteQuality
SIO_000300: 2.096367e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 3.237e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.135e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.892e1

BaseQRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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QD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495863805299125e-5
allele num: 66728
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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Latino
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.45e-1

ClippingRankSum
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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QD
type: SiteQuality
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FS
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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South Asian
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Latino
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allele num: 11570
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African
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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VQSLOD
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BaseQRankSum
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DP
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MQ
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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African
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East Asian
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FS
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InbreedingCoeff
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QD
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MQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.368e-1

DP
type: SiteQuality
SIO_000300: 2.09574e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42477
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9696
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 2.095282e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.162e1

FS
type: SiteQuality
SIO_000300: 5.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

GenotypeQuality
all individuals: 462
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9694
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 9.75e1
variant carriers: 23

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.447655594195947e-4
allele num: 66712
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 2.095836e6

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.173e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

FS
type: SiteQuality
SIO_000300: 5.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.286e1

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9694
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.173e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

QD
type: SiteQuality
SIO_000300: 1.286e1

DP
type: SiteQuality
SIO_000300: 2.095836e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
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variant carriers: 0

GenotypeQuality
all individuals: 42515
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9693
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variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2213
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
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variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.39e-1

QD
type: SiteQuality
SIO_000300: 1.051e1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e-1

FS
type: SiteQuality
SIO_000300: 5.551e0

MQ
type: SiteQuality
SIO_000300: 6.024e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.21e-1

DP
type: SiteQuality
SIO_000300: 2.095078e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9684
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
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variant carriers: 1

GenotypeQuality
all individuals: 375
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 1102
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 2243
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42459
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.203e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.868e0

MQRankSum
type: SiteQuality
SIO_000300: -4.94e-1

FS
type: SiteQuality
SIO_000300: 2.776e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.73e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 9.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.291e0

DP
type: SiteQuality
SIO_000300: 2.094533e6

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 369
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 461
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variant carriers: 0

GenotypeQuality
all individuals: 42447
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.017e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 6.045e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.093776e6

MQRankSum
type: SiteQuality
SIO_000300: -6.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.881e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e-1

QD
type: SiteQuality
SIO_000300: 1.239e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.69e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.028467595396729e-4
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.628e0

FS
type: SiteQuality
SIO_000300: 6.566e0

QD
type: SiteQuality
SIO_000300: 1.182e1

VQSLOD
type: SiteQuality
SIO_000300: 7.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQ
type: SiteQuality
SIO_000300: 6.005e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.88e0

DP
type: SiteQuality
SIO_000300: 2.090591e6

GenotypeQuality
all individuals: 2199
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1080
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 1880
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GenotypeQuality
all individuals: 60
bin: 5.25e1
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GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.089374e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.732e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

QD
type: SiteQuality
SIO_000300: 1.531e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.03e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.027e1

DP
type: SiteQuality
SIO_000300: 2.087957e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.022e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.722e1

FS
type: SiteQuality
SIO_000300: 2.695e0

VQSLOD
type: SiteQuality
SIO_000300: -6.169e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.471e0

QD
type: SiteQuality
SIO_000300: 1.492e1

DP
type: SiteQuality
SIO_000300: 2.062076e6

MQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.512e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 327
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27249
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537846399901578e-5
allele num: 65026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.021614e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.281e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.107e0

QD
type: SiteQuality
SIO_000300: 5.7e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.725e0

MQRankSum
type: SiteQuality
SIO_000300: -9.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 665
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558554907889405e-5
allele num: 64162
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.075e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 1.345e1

FS
type: SiteQuality
SIO_000300: 4.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e-1

DP
type: SiteQuality
SIO_000300: 2.022109e6

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 978
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.621271076523995e-4
allele num: 6168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558554907889405e-5
allele num: 64162
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.93016610108948e-5
allele num: 11198
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

FS
type: SiteQuality
SIO_000300: 4.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 2.022109e6

QD
type: SiteQuality
SIO_000300: 1.345e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.075e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1865
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variant carriers: 22

GenotypeQuality
all individuals: 962
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.345580303318739e-5
allele num: 63036
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.533913674283641e-4
allele num: 11028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15118
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.293789808917197e-3
allele num: 10048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.020854e6

ClippingRankSum
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QD
type: SiteQuality
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MQ
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -3.5e-3

FS
type: SiteQuality
SIO_000300: 6.57e-1

ReadPosRankSum
type: SiteQuality
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