X-2729398-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729398
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729398
    reference: chr 0
allele count: 1
allele frequency: 1.335345253515296e-5
allele num: 74887
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.431T>A
  hgvsp: ENSP00000370566.5:p.Val144Glu
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.434T>A
  hgvsp: ENSP00000398503.1:p.Val145Glu
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.476T>A
  hgvsp: ENSP00000411004.2:p.Val159Glu
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000430005
  ensembl transcript: ENST00000509484
  gene symbol: XG
  hgvsc: ENST00000509484.2:c.365T>A
  hgvsp: ENSP00000430005.1:p.Val122Glu
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val159Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

X-2729407-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729407
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729407
    reference: chr 0
allele count: 1
allele frequency: 1.348126777842188e-5
allele num: 74177
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.485T>C
  hgvsp: ENSP00000411004.2:p.Ile162Thr
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.443T>C
  hgvsp: ENSP00000398503.1:p.Ile148Thr
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.440T>C
  hgvsp: ENSP00000370566.5:p.Ile147Thr
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000430005
  ensembl transcript: ENST00000509484
  gene symbol: XG
  hgvsc: ENST00000509484.2:c.374T>C
  hgvsp: ENSP00000430005.1:p.Ile125Thr
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 676
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile162Thr
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff

X-2729408-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729408
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729408
    reference: chr 0
allele count: 40
allele frequency: 5.405770660179742e-4
allele num: 73995
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.441C>A
  hgvsp: ENST00000381174.5:c.441C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.444C>A
  hgvsp: ENST00000426774.1:c.444C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000430005
  ensembl transcript: ENST00000509484
  gene symbol: XG
  hgvsc: ENST00000509484.2:c.375C>A
  hgvsp: ENST00000509484.2:c.375C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.486C>A
  hgvsp: ENST00000419513.2:c.486C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ile162Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

X-2729408-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729408
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729408
    reference: chr 0
allele count: 4
allele frequency: 5.405770660179742e-5
allele num: 73995
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.441C>T
  hgvsp: ENST00000381174.5:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.444C>T
  hgvsp: ENST00000426774.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.486C>T
  hgvsp: ENST00000419513.2:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000430005
  ensembl transcript: ENST00000509484
  gene symbol: XG
  hgvsc: ENST00000509484.2:c.375C>T
  hgvsp: ENST00000509484.2:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ile162Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

X-2729409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729409
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729409
    reference: chr 0
allele count: 13
allele frequency: 1.761636967274206e-4
allele num: 73795
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.442G>A
  hgvsp: ENSP00000370566.5:p.Val148Ile
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.445G>A
  hgvsp: ENSP00000398503.1:p.Val149Ile
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.487G>A
  hgvsp: ENSP00000411004.2:p.Val163Ile
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000430005
  ensembl transcript: ENST00000509484
  gene symbol: XG
  hgvsc: ENST00000509484.2:c.376G>A
  hgvsp: ENSP00000430005.1:p.Val126Ile
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9223
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genotype depth: GenotypeDepth
  all individuals: 73
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 10560
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 650
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2043
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genotype quality: GenotypeQuality
  all individuals: 631
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Val163Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

X-2729409-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729409
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729409
    reference: chr 0
allele count: 1
allele frequency: 1.355105359441697e-5
allele num: 73795
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000430005
  ensembl transcript: ENST00000509484
  gene symbol: XG
  hgvsc: ENST00000509484.2:c.376G>T
  hgvsp: ENSP00000430005.1:p.Val126Leu
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.487G>T
  hgvsp: ENSP00000411004.2:p.Val163Leu
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.442G>T
  hgvsp: ENSP00000370566.5:p.Val148Leu
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.445G>T
  hgvsp: ENSP00000398503.1:p.Val149Leu
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Val163Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

X-2729414-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729414
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729414
    reference: chr 0
allele count: 4
allele frequency: 5.463809094510237e-5
allele num: 73209
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.450C>T
  hgvsp: ENST00000426774.1:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.492C>T
  hgvsp: ENST00000419513.2:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000430005
  ensembl transcript: ENST00000509484
  gene symbol: XG
  hgvsc: ENST00000509484.2:c.381C>T
  hgvsp: ENST00000509484.2:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.447C>T
  hgvsp: ENST00000381174.5:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser164Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-2729415-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729415
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729415
    reference: chr 0
allele count: 1
allele frequency: 1.369881779202455e-5
allele num: 72999
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000430005
  ensembl transcript: ENST00000509484
  gene symbol: XG
  hgvsc: ENST00000509484.2:c.382G>A
  hgvsp: ENSP00000430005.1:p.Val128Met
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.451G>A
  hgvsp: ENSP00000398503.1:p.Val151Met
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.448G>A
  hgvsp: ENSP00000370566.5:p.Val150Met
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.493G>A
  hgvsp: ENSP00000411004.2:p.Val165Met
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val165Met
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

X-2729429-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729429
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729429
    reference: chr 0
allele count: 1
allele frequency: 1.391459223287462e-5
allele num: 71867
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.507A>G
  hgvsp: ENST00000419513.2:c.507A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.465A>G
  hgvsp: ENST00000426774.1:c.465A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.462A>G
  hgvsp: ENST00000381174.5:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000430005
  ensembl transcript: ENST00000509484
  gene symbol: XG
  hgvsc: ENST00000509484.2:c.396A>G
  hgvsp: ENST00000509484.2:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr169Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-2729453-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729453
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729453
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 68699
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000430005
  ensembl transcript: ENST00000509484
  gene symbol: XG
  hgvsc: ENST00000509484.2:c.420T>C
  hgvsp: ENST00000509484.2:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.489T>C
  hgvsp: ENST00000426774.1:c.489T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.486T>C
  hgvsp: ENST00000381174.5:c.486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.531T>C
  hgvsp: ENST00000419513.2:c.531T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2808
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr177Tyr
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

X-2729473-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729473
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729473
    reference: chr 0
allele count: 2
allele frequency: 2.97349132483906e-5
allele num: 67261
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.506G>T
  hgvsp: ENSP00000370566.5:p.Arg169Ile
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.551G>T
  hgvsp: ENSP00000411004.2:p.Arg184Ile
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000430005
  ensembl transcript: ENST00000509484
  gene symbol: XG
  hgvsc: ENST00000509484.2:c.440G>T
  hgvsp: ENSP00000430005.1:p.Arg147Ile
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.509G>T
  hgvsp: ENSP00000398503.1:p.Arg170Ile
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 246
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  variant carriers: 0
hgvs: p.Arg184Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS

X-2729498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729498
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729498
    reference: chr 0
allele count: 4
allele frequency: 6.120044676326137e-5
allele num: 65359
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+5G>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+5G>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+5G>A
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
hgvs: c.571+5G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum

X-2729502-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729502
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729502
    reference: chr 0
allele count: 1
allele frequency: 1.540855791306492e-5
allele num: 64899
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+9G>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+9G>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+9G>T
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 194
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-2729504-CTCTAAACATTGTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729504
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729490
    reference: chr 0
allele count: 1
allele frequency: 1.546264225630876e-5
allele num: 64672
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 436
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: CTCTAAACATTGTTT
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-2729518-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729518
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729518
    reference: chr 0
allele count: 7
allele frequency: 1.156757114056251e-4
allele num: 60514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+25T>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+25T>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+25T>A
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-2729522-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729522
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729522
    reference: chr 0
allele count: 3
allele frequency: 5.287554858381655e-5
allele num: 56737
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+29T>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+29T>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+29T>G
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

X-2729527-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729527
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729527
    reference: chr 0
allele count: 3
allele frequency: 6.669186136985083e-5
allele num: 44983
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+34A>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+34A>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+34A>G
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

X-2729536-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729536
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729536
    reference: chr 0
allele count: 36
allele frequency: 2.469813391877058e-3
allele num: 14576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+43G>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+43G>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+43G>A
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-2729537-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729537
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729538
    reference: chr 0
allele count: 2
allele frequency: 1.717032967032967e-4
allele num: 11648
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+47dupT
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+47dupT
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+47dupT
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-2729539-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729539
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729540
    reference: chr 0
allele count: 22
allele frequency: 2.10003818251241e-3
allele num: 10476
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+46_529+47insC
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+46_526+47insC
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+46_571+47insC
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-2729539-T-TCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729539
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729541
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 10476
alternate allele: TCA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+46_526+47insCA
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+46_571+47insCA
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+46_529+47insCA
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

X-2729539-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729539
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729540
    reference: chr 0
allele count: 3
allele frequency: 2.86368843069874e-4
allele num: 10476
alternate allele: TA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+46_571+47insA
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+46_529+47insA
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+46_526+47insA
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 784
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
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site quality: MQRankSum

X-2729540-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729540
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729540
    reference: chr 0
allele count: 26
allele frequency: 1.131911188506748e-3
allele num: 22970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+47T>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+47T>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+47T>A
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 235
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

X-2729540-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729540
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729541
    reference: chr 0
allele count: 16596
allele frequency: 7.225076186329996e-1
allele num: 22970
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+58dupA
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+58dupA
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+58dupA
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 2.5e0
  variant carriers: 8610
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 740
num of homozygotes: 4870
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-2729540-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729540
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729542
    reference: chr 0
allele count: 309
allele frequency: 1.345232912494558e-2
allele num: 22970
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+57_529+58dupAA
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+57_571+58dupAA
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+57_526+58dupAA
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 91
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 32
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 7696
  bin: 7.5e0
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 8461
  bin: 1.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 3.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 6.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.25e1
  variant carriers: 25
num of homozygotes: 3
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-2729540-T-TAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729540
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729543
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 22970
alternate allele: TAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+56_529+58dupAAA
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+56_526+58dupAAA
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+56_571+58dupAAA
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 23994
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8461
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5191
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7696
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7693
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7325
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-2729540-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729540
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729541
    reference: chr 0
allele count: 1
allele frequency: 4.3535045711798e-5
allele num: 22970
alternate allele: TG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+47_571+48insG
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+47_526+48insG
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+47_529+48insG
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7696
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7325
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8461
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7693
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

X-2729540-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729540
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729539
    reference: chr 0
allele count: 103
allele frequency: 4.484109708315194e-3
allele num: 22970
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+58delA
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+58delA
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+58delA
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 1.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 23994
  bin: 7.5e0
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 9.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 7693
  bin: 1.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5191
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 5.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 8461
  bin: 1.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 7325
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 7696
  bin: 7.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.75e1
  variant carriers: 5
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: TA
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

X-2729541-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002729541
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002729541
    reference: chr 0
allele count: 6
allele frequency: 3.546099290780142e-3
allele num: 1692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.526+48A>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.529+48A>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.571+48A>T
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10996
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

X-2732356-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732356
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732357
    reference: chr 0
allele count: 26010
allele frequency: 6.281698304593537e-1
allele num: 41406
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-39dupT
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-39dupT
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-39dupT
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 347
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 1.75e1
  variant carriers: 6452
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 951
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 1101
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 9.75e1
  variant carriers: 1313
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.5e0
  variant carriers: 2569
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 1.25e1
  variant carriers: 11747
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 523
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 326
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 270
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.25e1
  variant carriers: 1223
genotype depth: GenotypeDepth
  all individuals: 18881
  bin: 7.5e0
  variant carriers: 14698
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.75e1
  variant carriers: 1621
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 2.25e1
  variant carriers: 3059
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 770
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 442
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 349
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 7.25e1
  variant carriers: 838
genotype quality: GenotypeQuality
  all individuals: 5778
  bin: 7.5e0
  variant carriers: 4805
genotype quality: GenotypeQuality
  all individuals: 6717
  bin: 1.75e1
  variant carriers: 5262
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 3.75e1
  variant carriers: 2231
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 6.75e1
  variant carriers: 761
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 5.25e1
  variant carriers: 1261
genotype quality: GenotypeQuality
  all individuals: 6711
  bin: 1.25e1
  variant carriers: 5556
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 3.25e1
  variant carriers: 2665
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 2.25e1
  variant carriers: 4141
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.75e1
  variant carriers: 652
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 9.25e1
  variant carriers: 415
genotype quality: GenotypeQuality
  all individuals: 3431
  bin: 2.75e1
  variant carriers: 2816
genotype quality: GenotypeQuality
  all individuals: 5101
  bin: 2.5e0
  variant carriers: 3889
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 6.25e1
  variant carriers: 1008
genotype quality: GenotypeQuality
  all individuals: 7179
  bin: 9.75e1
  variant carriers: 6887
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 5.75e1
  variant carriers: 1048
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 4.25e1
  variant carriers: 1692
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 4.75e1
  variant carriers: 1427
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.75e1
  variant carriers: 568
num of homozygotes: 4273
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

X-2732356-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732356
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732358
    reference: chr 0
allele count: 9870
allele frequency: 2.383712505433995e-1
allele num: 41406
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-40_530-39dupTT
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-40_527-39dupTT
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-40_572-39dupTT
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 9.75e1
  variant carriers: 384
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 1.25e1
  variant carriers: 3971
genotype depth: GenotypeDepth
  all individuals: 18881
  bin: 7.5e0
  variant carriers: 4493
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 376
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 1.75e1
  variant carriers: 2555
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.75e1
  variant carriers: 631
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.5e0
  variant carriers: 1257
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 2.25e1
  variant carriers: 1170
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.25e1
  variant carriers: 500
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 5101
  bin: 2.5e0
  variant carriers: 502
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 6.25e1
  variant carriers: 454
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 6.75e1
  variant carriers: 338
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 7.25e1
  variant carriers: 491
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 5.75e1
  variant carriers: 504
genotype quality: GenotypeQuality
  all individuals: 5778
  bin: 7.5e0
  variant carriers: 1003
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 3.25e1
  variant carriers: 520
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 8.25e1
  variant carriers: 320
genotype quality: GenotypeQuality
  all individuals: 6717
  bin: 1.75e1
  variant carriers: 1589
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 4.25e1
  variant carriers: 563
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 5.25e1
  variant carriers: 601
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 3.75e1
  variant carriers: 523
genotype quality: GenotypeQuality
  all individuals: 6711
  bin: 1.25e1
  variant carriers: 1243
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.75e1
  variant carriers: 323
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 2.25e1
  variant carriers: 1550
genotype quality: GenotypeQuality
  all individuals: 3431
  bin: 2.75e1
  variant carriers: 780
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.75e1
  variant carriers: 375
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 4.75e1
  variant carriers: 612
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 9.25e1
  variant carriers: 272
num of homozygotes: 390
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-2732356-C-CTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732356
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732359
    reference: chr 0
allele count: 469
allele frequency: 1.132686084142395e-2
allele num: 41406
alternate allele: CTTT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-41_572-39dupTTT
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-41_527-39dupTTT
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-41_530-39dupTTT
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 18881
  bin: 7.5e0
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 1.25e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 2.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 1.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.5e0
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 5778
  bin: 7.5e0
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 5101
  bin: 2.5e0
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 8.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 4.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 6711
  bin: 1.25e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 9.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 4.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 3.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 7179
  bin: 9.75e1
  variant carriers: 244
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 6.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 6717
  bin: 1.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 3.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 2.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 5.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 7.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 5.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 3431
  bin: 2.75e1
  variant carriers: 39
num of homozygotes: 1
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

X-2732356-C-CTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732356
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732360
    reference: chr 0
allele count: 2
allele frequency: 4.830217842824711e-5
allele num: 41406
alternate allele: CTTTT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-42_572-39dupTTTT
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-42_530-39dupTTTT
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-42_527-39dupTTTT
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18881
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6717
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5101
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7179
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3431
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5778
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6711
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-2732356-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732356
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732355
    reference: chr 0
allele count: 100
allele frequency: 2.415108921412356e-3
allele num: 41406
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-39delT
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-39delT
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-39delT
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 18881
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 2.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 1.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 1.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 3.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 6711
  bin: 1.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 5.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 7179
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 6717
  bin: 1.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 5101
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 6.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 5778
  bin: 7.5e0
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 5.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 2.25e1
  variant carriers: 10
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: CT
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ

X-2732356-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732356
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732354
    reference: chr 0
allele count: 2
allele frequency: 4.830217842824711e-5
allele num: 41406
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6711
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 3431
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1916
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6717
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4923
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5164
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3056
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5007
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: CTT
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS

X-2732365-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732365
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732366
    reference: chr 0
allele count: 1
allele frequency: 1.630709521712897e-5
allele num: 61323
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-40_530-39insC
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-40_527-39insC
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-40_572-39insC
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4413
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-2732367-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732367
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732367
    reference: chr 0
allele count: 1
allele frequency: 1.885760621546701e-5
allele num: 53029
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-38G>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-38G>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-38G>T
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13797
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5617
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

X-2732370-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732370
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732370
    reference: chr 0
allele count: 2
allele frequency: 3.165709039682163e-5
allele num: 63177
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-35C>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-35C>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-35C>A
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

X-2732377-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732377
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732377
    reference: chr 0
allele count: 1
allele frequency: 1.546359868868683e-5
allele num: 64668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-28T>C
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-28T>C
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
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  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-28T>C
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
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site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
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X-2732379-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732379
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732379
    reference: chr 0
allele count: 1
allele frequency: 1.536192700012289e-5
allele num: 65096
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-26A>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-26A>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
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  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-26A>G
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

X-2732381-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732381
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732381
    reference: chr 0
allele count: 1
allele frequency: 1.526344709689236e-5
allele num: 65516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-24A>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-24A>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-24A>G
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
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site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
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site quality: MQ
site quality: ClippingRankSum
site quality: DP
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X-2732383-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732383
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732383
    reference: chr 0
allele count: 10
allele frequency: 1.516139302879149e-4
allele num: 65957
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-22T>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-22T>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-22T>G
  variant of: http://identifiers.org/hgnc/12806
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

X-2732398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732398
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732398
    reference: chr 0
allele count: 1
allele frequency: 1.446445360526506e-5
allele num: 69135
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.572-7C>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.527-7C>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.530-7C>T
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 306
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 461
  bin: 8.75e1
  variant carriers: 0
hgvs: c.572-7C>T
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

X-2732416-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732416
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732415
    reference: chr 0
allele count: 1
allele frequency: 1.371836202757391e-5
allele num: 72895
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.584delT
  hgvsp: ENSP00000411004.2:p.Val195AlafsTer8
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.542delT
  hgvsp: ENSP00000398503.1:p.Val181AlafsTer8
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.539delT
  hgvsp: ENSP00000370566.5:p.Val180AlafsTer8
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5021
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val195AlafsTer8
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: GT
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

X-2732423-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732423
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732423
    reference: chr 0
allele count: 2
allele frequency: 2.69865472062177e-5
allele num: 74111
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.*2G>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.*2G>A
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-2732424-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732424
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732424
    reference: chr 0
allele count: 1
allele frequency: 1.346946472347189e-5
allele num: 74242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.*3A>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.*3A>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.*3A>G
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-2732428-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732428
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732428
    reference: chr 0
allele count: 1
allele frequency: 1.337971635001338e-5
allele num: 74740
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.*7T>C
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.*7T>C
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.*7T>C
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

X-2732431-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732431
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732431
    reference: chr 0
allele count: 1
allele frequency: 1.334169412832041e-5
allele num: 74953
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.*10G>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.*10G>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.*10G>T
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-2732448-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732448
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732448
    reference: chr 0
allele count: 1
allele frequency: 1.324731410706479e-5
allele num: 75487
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.*27G>C
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.*27G>C
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.*27G>C
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1189
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-2732461-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732461
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732461
    reference: chr 0
allele count: 1
allele frequency: 1.322786317098336e-5
allele num: 75598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.*40A>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.*40A>G
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.*40A>G
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-2732465-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732465
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732465
    reference: chr 0
allele count: 1
allele frequency: 1.323942170206005e-5
allele num: 75532
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.*44C>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.*44C>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.*44C>T
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4637
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-2732472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732472
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732472
    reference: chr 0
allele count: 2
allele frequency: 2.655337227827934e-5
allele num: 75320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.*51C>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.*51C>T
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.*51C>T
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 753
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

X-2732473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002732473
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002732473
    reference: chr 0
allele count: 1
allele frequency: 1.330070227708023e-5
allele num: 75184
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000411004
  ensembl transcript: ENST00000419513
  gene symbol: XG
  hgvsc: ENST00000419513.2:c.*52G>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000370566
  ensembl transcript: ENST00000381174
  gene symbol: XG
  hgvsc: ENST00000381174.5:c.*52G>A
  variant of: http://identifiers.org/hgnc/12806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124343
  ensembl protein: ENSP00000398503
  ensembl transcript: ENST00000426774
  gene symbol: XG
  hgvsc: ENST00000426774.1:c.*52G>A
  variant of: http://identifiers.org/hgnc/12806
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7200
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

X-2748181-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748181
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748181
    reference: chr 0
allele count: 30
allele frequency: 3.576708474414612e-4
allele num: 83876
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-49C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-49C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.142C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-49C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.80C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

X-2748182-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748182
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748182
    reference: chr 0
allele count: 5
allele frequency: 5.954578475389727e-5
allele num: 83969
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-48G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-48G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.81G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-48G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.143G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-48G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-48G>T
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8341
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16418
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum

X-2748185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748185
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748185
    reference: chr 0
allele count: 5
allele frequency: 5.949760224662946e-5
allele num: 84037
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-45C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.84C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-45C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-45C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.146C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-45C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-45C>T
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5897
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16422
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1977
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10458
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2985
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

X-2748186-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748186
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748186
    reference: chr 0
allele count: 3
allele frequency: 3.567224342738915e-5
allele num: 84099
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-44G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.147G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-44G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-44G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-44G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-44G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.85G>T
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16428
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1987
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-2748187-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748187
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748187
    reference: chr 0
allele count: 3
allele frequency: 3.562395354636458e-5
allele num: 84213
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-43C>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-43C>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-43C>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-43C>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.148C>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-43C>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.86C>A
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6774
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD

X-2748188-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748188
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748188
    reference: chr 0
allele count: 1
allele frequency: 1.187775415424452e-5
allele num: 84191
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-42A>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-42A>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.87A>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.149A>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-42A>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-42A>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-42A>G
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12385
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2902
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS

X-2748190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748190
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748190
    reference: chr 0
allele count: 5
allele frequency: 5.930494603249911e-5
allele num: 84310
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-40G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.89G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-40G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-40G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.151G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-40G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-40G>A
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14398
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16450
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3084
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

X-2748202-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748202
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748202
    reference: chr 0
allele count: 2
allele frequency: 2.363842662632375e-5
allele num: 84608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.163G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-28G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-28G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.101G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-28G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-28G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-28G>C
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17440
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2696
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3234
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

X-2748204-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748204
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748204
    reference: chr 0
allele count: 2
allele frequency: 2.361832782239017e-5
allele num: 84680
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-26G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-26G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.103G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.165G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-26G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-26G>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-26G>T
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5097
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

X-2748207-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748207
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748207
    reference: chr 0
allele count: 5
allele frequency: 5.891155019853192e-5
allele num: 84873
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-23C>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.168C>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-23C>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-23C>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-23C>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-23C>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.106C>G
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16493
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

X-2748213-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748213
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748213
    reference: chr 0
allele count: 2
allele frequency: 2.350424839289702e-5
allele num: 85091
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-17C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-17C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.112C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-17C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.174C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18912
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9844
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16498
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18927
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5312
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-2748215-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748215
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748215
    reference: chr 0
allele count: 6
allele frequency: 7.042170866539126e-5
allele num: 85201
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-15G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-15G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-15G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.176G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-15G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-15G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.114G>A
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19029
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19128
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 292
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5330
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

X-2748219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748219
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748219
    reference: chr 0
allele count: 2
allele frequency: 2.344033847848763e-5
allele num: 85323
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-11C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-11C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.180C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.118C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-11C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18967
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18969
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum

X-2748220-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748220
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748220
    reference: chr 0
allele count: 1
allele frequency: 1.172168042010503e-5
allele num: 85312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.119G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.181G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.-10G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.-10G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.-10G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18905
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD

X-2748231-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748231
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748231
    reference: chr 0
allele count: 2
allele frequency: 2.33647589340997e-5
allele num: 85599
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.130T>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.2T>G
  hgvsp: ENSP00000341273.5:p.Met1?
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.2T>G
  hgvsp: ENSP00000381786.3:p.Met1?
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.2T>G
  hgvsp: ENSP00000430764.1:p.Met1?
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.2T>G
  hgvsp: ENSP00000370555.3:p.Met1?
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.2T>G
  hgvsp: ENSP00000446092.1:p.Met1?
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.192T>G
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18357
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18857
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3542
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

X-2748245-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748245
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748245
    reference: chr 0
allele count: 1
allele frequency: 1.166262362381041e-5
allele num: 85744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.7+9C>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.7+9C>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.7+9C>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.7+9C>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.135+9C>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.197+9C>G
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.7+9C>G
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-2748250-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748250
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748250
    reference: chr 0
allele count: 6
allele frequency: 6.994311293481302e-5
allele num: 85784
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.7+14G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.135+14G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.7+14G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.7+14G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.7+14G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.7+14G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.197+14G>C
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16673
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11481
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 7382
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genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14508
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

X-2748251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748251
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748251
    reference: chr 0
allele count: 1
allele frequency: 1.165487581729817e-5
allele num: 85801
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.7+15C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.7+15C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.135+15C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.7+15C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.197+15C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.7+15C>T
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.7+15C>T
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11568
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

X-2748253-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748253
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748253
    reference: chr 0
allele count: 83305
allele frequency: 9.576828455153703e-1
allele num: 86986
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.7+17G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.135+17G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.7+17G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.197+17G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.7+17G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.7+17G>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.7+17G>C
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 7.75e1
  variant carriers: 1325
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 5.75e1
  variant carriers: 3100
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 5.25e1
  variant carriers: 3360
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 1.25e1
  variant carriers: 1726
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 6.75e1
  variant carriers: 2238
genotype depth: GenotypeDepth
  all individuals: 6332
  bin: 2.25e1
  variant carriers: 5976
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 3.25e1
  variant carriers: 6583
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.75e1
  variant carriers: 5753
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 1.75e1
  variant carriers: 3893
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.75e1
  variant carriers: 3745
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 8.25e1
  variant carriers: 1013
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.5e0
  variant carriers: 481
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 9.75e1
  variant carriers: 2678
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 4.25e1
  variant carriers: 4528
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 6.25e1
  variant carriers: 2727
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.75e1
  variant carriers: 741
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 2.75e1
  variant carriers: 7212
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 7.25e1
  variant carriers: 1808
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.25e1
  variant carriers: 526
genotype quality: GenotypeQuality
  all individuals: 37404
  bin: 9.75e1
  variant carriers: 37263
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 9.25e1
  variant carriers: 2690
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 3.75e1
  variant carriers: 759
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 6.75e1
  variant carriers: 2450
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.75e1
  variant carriers: 166
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.25e1
  variant carriers: 261
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 4.75e1
  variant carriers: 1205
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 6.25e1
  variant carriers: 2142
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 8.75e1
  variant carriers: 1454
num of homozygotes: 24472
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-2748255-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748255
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748255
    reference: chr 0
allele count: 1
allele frequency: 1.16452394261226e-5
allele num: 85872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.135+19T>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.7+19T>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.7+19T>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.7+19T>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.7+19T>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.7+19T>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.197+19T>A
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21684
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3013
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

X-2748264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748264
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748264
    reference: chr 0
allele count: 1
allele frequency: 1.167160764723733e-5
allele num: 85678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.197+28G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.7+28G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.7+28G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.7+28G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.135+28G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.7+28G>A
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.7+28G>A
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8663
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4889
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10317
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5788
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-2748273-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24002748273
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24002748273
    reference: chr 0
allele count: 1
allele frequency: 1.170658612535412e-5
allele num: 85422
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000381786
  ensembl transcript: ENST00000398806
  gene symbol: GYG2
  hgvsc: ENST00000398806.3:c.7+37T>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000430764
  ensembl transcript: ENST00000520904
  gene symbol: GYG2
  hgvsc: ENST00000520904.1:c.7+37T>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000446092
  ensembl transcript: ENST00000542787
  gene symbol: GYG2
  hgvsc: ENST00000542787.1:c.7+37T>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000370555
  ensembl transcript: ENST00000381163
  gene symbol: GYG2
  hgvsc: ENST00000381163.3:c.7+37T>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000469234
  gene symbol: GYG2
  hgvsc: ENST00000469234.2:n.135+37T>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl protein: ENSP00000341273
  ensembl transcript: ENST00000338623
  gene symbol: GYG2
  hgvsc: ENST00000338623.5:c.7+37T>C
  variant of: http://identifiers.org/hgnc/4700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000056998
  ensembl transcript: ENST00000381161
  gene symbol: GYG2
  hgvsc: ENST00000381161.1:n.197+37T>C
  variant of: http://identifiers.org/hgnc/4700
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15642
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 4093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 759
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8155
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7875
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.693766937669377e-4
allele num: 5904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 543
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.294252e6

FS
type: SiteQuality
SIO_000300: 1.455e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.338e0

QD
type: SiteQuality
SIO_000300: 1.298e1

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.06e-1

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17303
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8103
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 541
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.500937851694385e-5
allele num: 39985
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5852
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.277149e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.828e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

GenotypeQuality
all individuals: 1293
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 762
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 4.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7815
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8135
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

South Asian
type: Population
allele count: 40
allele frequency: 4.940711462450593e-3
allele num: 8096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39873
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.117e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

QD
type: SiteQuality
SIO_000300: 1.742e1

MQ
type: SiteQuality
SIO_000300: 5.908e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.003e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

DP
type: SiteQuality
SIO_000300: 1.276542e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.829e-1

GenotypeQuality
all individuals: 264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17412
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.015925563664635e-5
allele num: 39873
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7815
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.458512599877074e-4
allele num: 8135
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.742e1

DP
type: SiteQuality
SIO_000300: 1.276542e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.003e-1

FS
type: SiteQuality
SIO_000300: 5.117e0

MQ
type: SiteQuality
SIO_000300: 5.908e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.829e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

GenotypeQuality
all individuals: 595
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3772
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.281394156842645e-4
allele num: 7804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.90320826536161e-3
allele num: 3678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 543
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.43819838404676e-4
allele num: 5817
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8131
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.547739452034116e-5
allele num: 39747
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8075
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-2

QD
type: SiteQuality
SIO_000300: 1.653e1

FS
type: SiteQuality
SIO_000300: 1.163e0

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.65e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

DP
type: SiteQuality
SIO_000300: 1.270693e6

GenotypeQuality
all individuals: 1935
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39747
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8131
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.238390092879257e-4
allele num: 8075
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 543
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5817
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.653e1

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

FS
type: SiteQuality
SIO_000300: 1.163e0

DP
type: SiteQuality
SIO_000300: 1.270693e6

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.65e-2

GenotypeQuality
all individuals: 400
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8091
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3645
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.15331100231899e-4
allele num: 7762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8009
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39377
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 539
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.84e-1

MQ
type: SiteQuality
SIO_000300: 5.815e1

DP
type: SiteQuality
SIO_000300: 1.260467e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.999e-1

QD
type: SiteQuality
SIO_000300: 1.403e1

FS
type: SiteQuality
SIO_000300: 2.033e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.08e-1

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.289490651192779e-4
allele num: 7755
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3635
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8005
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39224
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 1.253304e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.307e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.369e0

FS
type: SiteQuality
SIO_000300: 5.449e0

GenotypeQuality
all individuals: 3383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 570
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7929
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 535
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.595717066839715e-5
allele num: 38525
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 9.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.115e0

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.181e1

DP
type: SiteQuality
SIO_000300: 1.218542e6

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 511
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7653
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36443
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3487
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5446
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7629
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

QD
type: SiteQuality
SIO_000300: 2.337e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.14e-1

DP
type: SiteQuality
SIO_000300: 1.156969e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3441
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 495
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7509
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.628887450395429e-5
allele num: 35531
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7483
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.129936e6

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.026e0

QD
type: SiteQuality
SIO_000300: 1.155e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.154e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.772561092938234e-4
allele num: 5197
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7333
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.370050691875599e-4
allele num: 7299
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 485
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3361
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34452
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.97e-1

DP
type: SiteQuality
SIO_000300: 1.036143e6

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 1.277e1

FS
type: SiteQuality
SIO_000300: 1.804e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.855e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7173
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 481
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3343
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7263
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.924917371084267e-5
allele num: 34189
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5164
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.016912e6

VQSLOD
type: SiteQuality
SIO_000300: -2.678e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

QD
type: SiteQuality
SIO_000300: 2.84e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7262
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.380452788514633e-4
allele num: 7244
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3341
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34075
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5150
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7118
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

DP
type: SiteQuality
SIO_000300: 1.007312e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 31524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7007
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 433
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.437371663244353e-3
allele num: 4870
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.347e0

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.429e1

DP
type: SiteQuality
SIO_000300: 9.27805e5

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.48e-2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6866
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 29230
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 407
num of homozygotes: 0

East Asian
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allele frequency: 6.511829824180595e-4
allele num: 4607
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6309
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3008
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.05604e5

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.597e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4724
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 1.339943722363661e-4
allele num: 22389
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3683
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2466
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6309
num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 0.0e0

MQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -4.52e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 2

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
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allele count: 0
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 8.750607681088965e-3
allele num: 4114
num of homozygotes: 1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 2.019793981013936e-4
allele num: 4951
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.805054151624549e-3
allele num: 554
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 865
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3797
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 23

Other
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allele frequency: 0.0e0
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Latino
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allele num: 495
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South Asian
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African
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allele frequency: 5.910800644814616e-3
allele num: 3722
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East Asian
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allele frequency: 0.0e0
allele num: 806
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4167
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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ReadPosRankSum
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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VQSLOD
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4167
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 79
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 495
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 379
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.773e-1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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FS
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VQSLOD
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.799616030717543e-4
allele num: 4167
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3722
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.240694789081886e-3
allele num: 806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 379
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 495
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 79
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.419e1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 6.194e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.773e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.52313e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 1849
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 209
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.112469437652812e-4
allele num: 1636
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 5.494505494505495e-3
allele num: 4004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.623524267599475e-4
allele num: 11435
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1704
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.158e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 9.61e-1

DP
type: SiteQuality
SIO_000300: 6.67819e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

QD
type: SiteQuality
SIO_000300: 1.979e1

GenotypeQuality
all individuals: 502
bin: 8.25e1
variant carriers: 469

African
type: Population
allele count: 1493
allele frequency: 3.728771228771229e-1
allele num: 4004
num of homozygotes: 196

East Asian
type: Population
allele count: 1092
allele frequency: 6.674816625916871e-1
allele num: 1636
num of homozygotes: 301

European (Finnish)
type: Population
allele count: 1447
allele frequency: 8.643966547192353e-1
allele num: 1674
num of homozygotes: 488

Other
type: Population
allele count: 168
allele frequency: 8.038277511961722e-1
allele num: 209
num of homozygotes: 49

European (Non-Finnish)
type: Population
allele count: 9512
allele frequency: 8.318320944468737e-1
allele num: 11435
num of homozygotes: 3216

South Asian
type: Population
allele count: 1716
allele frequency: 7.435008665511266e-1
allele num: 2308
num of homozygotes: 286

Latino
type: Population
allele count: 1168
allele frequency: 6.854460093896714e-1
allele num: 1704
num of homozygotes: 334

FS
type: SiteQuality
SIO_000300: 9.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

QD
type: SiteQuality
SIO_000300: 1.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

DP
type: SiteQuality
SIO_000300: 6.67819e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.158e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

GenotypeQuality
all individuals: 7693
bin: 1.75e1
variant carriers: 66

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 5.684302579798863e-3
allele num: 11435
num of homozygotes: 0

African
type: Population
allele count: 79
allele frequency: 1.973026973026973e-2
allele num: 4004
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 1.435406698564593e-2
allele num: 209
num of homozygotes: 0

Latino
type: Population
allele count: 116
allele frequency: 6.807511737089202e-2
allele num: 1704
num of homozygotes: 3

South Asian
type: Population
allele count: 40
allele frequency: 1.733102253032929e-2
allele num: 2308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 3.667481662591687e-3
allele num: 1636
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

DP
type: SiteQuality
SIO_000300: 6.67819e5

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

QD
type: SiteQuality
SIO_000300: 1.979e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 9.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.158e-1

GenotypeQuality
all individuals: 3805
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11435
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 209
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.61e-1

DP
type: SiteQuality
SIO_000300: 6.67819e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

QD
type: SiteQuality
SIO_000300: 1.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.158e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

GenotypeQuality
all individuals: 5191
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 209
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11435
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1704
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 4.332755632582322e-4
allele num: 2308
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

QD
type: SiteQuality
SIO_000300: 1.979e1

FS
type: SiteQuality
SIO_000300: 9.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.158e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

DP
type: SiteQuality
SIO_000300: 6.67819e5

GenotypeQuality
all individuals: 2674
bin: 2.75e1
variant carriers: 12

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 3.4980323567993e-4
allele num: 11435
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2308
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 2.934272300469483e-3
allele num: 1704
num of homozygotes: 0

African
type: Population
allele count: 93
allele frequency: 2.322677322677323e-2
allele num: 4004
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.112469437652812e-4
allele num: 1636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 209
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.158e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

FS
type: SiteQuality
SIO_000300: 9.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.67819e5

GenotypeQuality
all individuals: 140
bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 3.875968992248062e-2
allele num: 129
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 8.445945945945946e-4
allele num: 1184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 177
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.17e-1

QD
type: SiteQuality
SIO_000300: 7.4e0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.955e-1

FS
type: SiteQuality
SIO_000300: 4.278e0

DP
type: SiteQuality
SIO_000300: 8.14915e5

GenotypeQuality
all individuals: 631
bin: 8.25e1
variant carriers: 592

Latino
type: Population
allele count: 2279
allele frequency: 4.629291082673167e-1
allele num: 4923
num of homozygotes: 184

South Asian
type: Population
allele count: 3098
allele frequency: 5.999225406661503e-1
allele num: 5164
num of homozygotes: 165

Other
type: Population
allele count: 203
allele frequency: 6.527331189710611e-1
allele num: 311
num of homozygotes: 31

European (Finnish)
type: Population
allele count: 1528
allele frequency: 7.057736720554273e-1
allele num: 2165
num of homozygotes: 285

African
type: Population
allele count: 2989
allele frequency: 5.969642500499301e-1
allele num: 5007
num of homozygotes: 576

European (Non-Finnish)
type: Population
allele count: 13996
allele frequency: 6.735322425409047e-1
allele num: 20780
num of homozygotes: 2692

East Asian
type: Population
allele count: 1917
allele frequency: 6.272905759162304e-1
allele num: 3056
num of homozygotes: 340

DP
type: SiteQuality
SIO_000300: 1.117657e6

QD
type: SiteQuality
SIO_000300: 1.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.472e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

FS
type: SiteQuality
SIO_000300: 8.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

GenotypeQuality
all individuals: 7179
bin: 9.75e1
variant carriers: 4428

European (Finnish)
type: Population
allele count: 393
allele frequency: 1.815242494226328e-1
allele num: 2165
num of homozygotes: 8

African
type: Population
allele count: 797
allele frequency: 1.591771519872179e-1
allele num: 5007
num of homozygotes: 14

European (Non-Finnish)
type: Population
allele count: 4257
allele frequency: 2.048604427333975e-1
allele num: 20780
num of homozygotes: 118

Latino
type: Population
allele count: 2214
allele frequency: 4.497257769652651e-1
allele num: 4923
num of homozygotes: 219

South Asian
type: Population
allele count: 1411
allele frequency: 2.732378001549187e-1
allele num: 5164
num of homozygotes: 15

East Asian
type: Population
allele count: 728
allele frequency: 2.382198952879581e-1
allele num: 3056
num of homozygotes: 16

Other
type: Population
allele count: 70
allele frequency: 2.2508038585209e-1
allele num: 311
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

DP
type: SiteQuality
SIO_000300: 1.117657e6

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

FS
type: SiteQuality
SIO_000300: 8.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.472e-1

QD
type: SiteQuality
SIO_000300: 1.948e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1089
bin: 6.25e1
variant carriers: 20

Latino
type: Population
allele count: 46
allele frequency: 9.343895998374974e-3
allele num: 4923
num of homozygotes: 0

South Asian
type: Population
allele count: 230
allele frequency: 4.453911696359411e-2
allele num: 5164
num of homozygotes: 1

African
type: Population
allele count: 156
allele frequency: 3.115638106650689e-2
allele num: 5007
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.618937644341801e-4
allele num: 2165
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 2.290575916230366e-3
allele num: 3056
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.215434083601286e-3
allele num: 311
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 1.347449470644851e-3
allele num: 20780
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.472e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

FS
type: SiteQuality
SIO_000300: 8.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

QD
type: SiteQuality
SIO_000300: 1.948e1

DP
type: SiteQuality
SIO_000300: 1.117657e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

GenotypeQuality
all individuals: 466
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.936483346243222e-4
allele num: 5164
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.031281738777168e-4
allele num: 4923
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5007
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2165
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 311
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

QD
type: SiteQuality
SIO_000300: 1.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.472e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.117657e6

FS
type: SiteQuality
SIO_000300: 8.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

GenotypeQuality
all individuals: 631
bin: 8.25e1
variant carriers: 8

European (Non-Finnish)
type: Population
allele count: 54
allele frequency: 2.598652550529355e-3
allele num: 20780
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 2.19692430597164e-3
allele num: 5007
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 9.682416731216112e-4
allele num: 5164
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 4.581151832460733e-3
allele num: 3056
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 1.625025391021735e-3
allele num: 4923
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.215434083601286e-3
allele num: 311
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 3.233256351039261e-3
allele num: 2165
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.117657e6

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 1.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.472e-1

FS
type: SiteQuality
SIO_000300: 8.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 9.624639076034648e-5
allele num: 20780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2165
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 311
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

DP
type: SiteQuality
SIO_000300: 1.117657e6

QD
type: SiteQuality
SIO_000300: 1.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.472e-1

FS
type: SiteQuality
SIO_000300: 8.75e-1

GenotypeQuality
all individuals: 663
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7045
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4743
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.142973881887042e-5
allele num: 31817
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 3.428e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.67e-1

DP
type: SiteQuality
SIO_000300: 1.175607e6

MQ
type: SiteQuality
SIO_000300: 6.261e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.59e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.622794623772778e-5
allele num: 27603
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4091
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5961
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.206035e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: -2.912e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.571e0

QD
type: SiteQuality
SIO_000300: 3.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

FS
type: SiteQuality
SIO_000300: 7.372e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7213
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7271
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3483
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.074780548552684e-5
allele num: 32923
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6931
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.059e0

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

MQ
type: SiteQuality
SIO_000300: 5.863e1

DP
type: SiteQuality
SIO_000300: 1.22797e6

QD
type: SiteQuality
SIO_000300: 1.465e1

VQSLOD
type: SiteQuality
SIO_000300: -1.125e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33773
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5053
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7432
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.418037436188315e-4
allele num: 7052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

DP
type: SiteQuality
SIO_000300: 1.279419e6

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.337e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7473
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.958480219349785e-4
allele num: 5106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34041
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7077
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 473
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQ
type: SiteQuality
SIO_000300: 5.763e1

VQSLOD
type: SiteQuality
SIO_000300: -1.105e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

QD
type: SiteQuality
SIO_000300: 2.534e1

DP
type: SiteQuality
SIO_000300: 1.291595e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.405876564037678e-4
allele num: 7113
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7397
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3571
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 473
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.893e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.44e-1

DP
type: SiteQuality
SIO_000300: 1.304339e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.381e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3593
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7569
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7451
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.893937201562726e-4
allele num: 34555
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 477
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.393e1

DP
type: SiteQuality
SIO_000300: 1.312442e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

FS
type: SiteQuality
SIO_000300: 1.625e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7901
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36514
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.701972439881113e-4
allele num: 3701
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7653
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.435e0

MQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.111e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

DP
type: SiteQuality
SIO_000300: 1.38953e6

QD
type: SiteQuality
SIO_000300: 1.83e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8227
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.572148773085035e-5
allele num: 38878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3893
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 529
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.462629e6

FS
type: SiteQuality
SIO_000300: 8.978999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.327e1

MQ
type: SiteQuality
SIO_000300: 6.039e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.387533875338753e-4
allele num: 5904
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8347
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3949
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7687
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39634
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8058
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.56e-1

FS
type: SiteQuality
SIO_000300: 6.719e0

DP
type: SiteQuality
SIO_000300: 1.482485e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.377e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.17e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

MQ
type: SiteQuality
SIO_000300: 5.884e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8071
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39717
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.299714062906161e-4
allele num: 7694
num of homozygotes: 0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.792e1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 541
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3978
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.498188813110495e-5
allele num: 40029
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.488314e6

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3988
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.186239620403321e-4
allele num: 8430
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40155
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8481
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8191
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4011
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.469501654566108e-5
allele num: 40494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7769
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 551
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

FS
type: SiteQuality
SIO_000300: 4.469e0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

QD
type: SiteQuality
SIO_000300: 1.318e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

DP
type: SiteQuality
SIO_000300: 1.462608e6

GenotypeQuality
all individuals: 4640
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4019
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.465787202564419e-5
allele num: 40555
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8481
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 557
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.926e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.436825e6

FS
type: SiteQuality
SIO_000300: 1.746e0

MQ
type: SiteQuality
SIO_000300: 5.799e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 1482
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8201
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.286670097786928e-4
allele num: 7772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40523
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.431437e6

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.52e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.290322580645161e-4
allele num: 7750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8467
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40413
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4004
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.675884028825205e-4
allele num: 5967
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 557
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4854e1

QD
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: -7.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.953e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 3.538e1

VQSLOD
type: SiteQuality
SIO_000300: -3.408e0

DP
type: SiteQuality
SIO_000300: 1.433193e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.484e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.49500998003992e-4
allele num: 4008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8109
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7745
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 5.832e0

QD
type: SiteQuality
SIO_000300: 3.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.358e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.037e0

VQSLOD
type: SiteQuality
SIO_000300: -5.065e0

DP
type: SiteQuality
SIO_000300: 1.435346e6

MQ
type: SiteQuality
SIO_000300: 3.574e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 23

GenotypeQuality
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GenotypeQuality
all individuals: 1970
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3976
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.063490375412102e-4
allele num: 9403
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9077
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6525
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8169
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 6.285218899003035e-4
allele num: 46140
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 1.899e1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

DP
type: SiteQuality
SIO_000300: 1.783364e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.055e-1

MQ
type: SiteQuality
SIO_000300: 5.789e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2924
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3980
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.65579543714592e-4
allele num: 6531
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9437
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46175
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

QD
type: SiteQuality
SIO_000300: 1.772e1

VQSLOD
type: SiteQuality
SIO_000300: -2.093e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

DP
type: SiteQuality
SIO_000300: 1.787357e6

FS
type: SiteQuality
SIO_000300: 1.4449e1

MQ
type: SiteQuality
SIO_000300: 5.501e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

GenotypeQuality
all individuals: 2813
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4380
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9425
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3977
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.081268111240863e-4
allele num: 46242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.628e0

DP
type: SiteQuality
SIO_000300: 1.795213e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

FS
type: SiteQuality
SIO_000300: 7.362e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.15e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.451e-1

MQ
type: SiteQuality
SIO_000300: 5.398e1

QD
type: SiteQuality
SIO_000300: 1.57e1

GenotypeQuality
all individuals: 2500
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 854
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3975
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.221001221001221e-4
allele num: 8190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.323950361049855e-5
allele num: 46254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.222e1

QD
type: SiteQuality
SIO_000300: 1.605e1

VQSLOD
type: SiteQuality
SIO_000300: -6.989e-1

DP
type: SiteQuality
SIO_000300: 1.800342e6

FS
type: SiteQuality
SIO_000300: 1.455e0

MQRankSum
type: SiteQuality
SIO_000300: -2.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1418
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46321
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6553
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9097
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.169237270230298e-4
allele num: 9466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3992
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.87e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.12e-2

DP
type: SiteQuality
SIO_000300: 1.804819e6

QD
type: SiteQuality
SIO_000300: 2.702e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.776e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.159500723432742e-5
allele num: 46307
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9474
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3994
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.287e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.168e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 120
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GenotypeQuality
all individuals: 3039
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.260942760942761e-4
allele num: 9504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.645e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.38e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.167e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

MQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

QD
type: SiteQuality
SIO_000300: 1.829e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-2

DP
type: SiteQuality
SIO_000300: 1.818995e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

GenotypeQuality
all individuals: 16479
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2057
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5017
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16524
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9551
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.045530683721638e-4
allele num: 6567
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4033
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46498
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

VQSLOD
type: SiteQuality
SIO_000300: -1.395e0

FS
type: SiteQuality
SIO_000300: 9.109999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

MQ
type: SiteQuality
SIO_000300: 5.431e1

DP
type: SiteQuality
SIO_000300: 1.859978e6

QD
type: SiteQuality
SIO_000300: 1.553e1

GenotypeQuality
all individuals: 560
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16485
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9135
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8243
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.298117424568039e-5
allele num: 46532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9575
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4033
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.869071e6

FS
type: SiteQuality
SIO_000300: 4.314e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.185e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.73e-1

MQ
type: SiteQuality
SIO_000300: 5.123e1

VQSLOD
type: SiteQuality
SIO_000300: -1.614e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3322
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5203
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18149
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9613
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9143
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.054001695120475e-4
allele num: 8259
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -4.5e-3

DP
type: SiteQuality
SIO_000300: 1.879625e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

QD
type: SiteQuality
SIO_000300: 1.32e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.059e0

FS
type: SiteQuality
SIO_000300: 1.076e0

MQ
type: SiteQuality
SIO_000300: 5.879e1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3408
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2535
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.139769760773741e-5
allele num: 46734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4081
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.206418144528894e-4
allele num: 8289
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6585
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

FS
type: SiteQuality
SIO_000300: 7.223e0

VQSLOD
type: SiteQuality
SIO_000300: -4.218e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

MQ
type: SiteQuality
SIO_000300: 5.31e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

DP
type: SiteQuality
SIO_000300: 1.892031e6

QD
type: SiteQuality
SIO_000300: 2.178e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
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variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 226
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variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16505
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2083
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9158
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.135221751266412e-4
allele num: 9673
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4096
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.036744609778318e-4
allele num: 6586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.532e1

DP
type: SiteQuality
SIO_000300: 1.896406e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

FS
type: SiteQuality
SIO_000300: 3.081e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.66e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.31e-1

MQ
type: SiteQuality
SIO_000300: 5.507e1

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16515
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variant carriers: 2

GenotypeQuality
all individuals: 467
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variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
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variant carriers: 0

GenotypeQuality
all individuals: 402
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variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6585
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9168
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.060156571899464e-4
allele num: 9708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.139e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.197e0

VQSLOD
type: SiteQuality
SIO_000300: -1.377e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.553e1

DP
type: SiteQuality
SIO_000300: 1.902714e6

MQRankSum
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2427
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16514
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3457
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variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9709
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6583
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8311
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.135200922406798e-5
allele num: 46834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9168
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.905173e6

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-1

MQ
type: SiteQuality
SIO_000300: 5.879e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.21e-2

QD
type: SiteQuality
SIO_000300: 2.065e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.842e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16521
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.088494611951671e-4
allele num: 9187
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4143
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.128384130767921e-5
allele num: 46984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.81e-1

MQ
type: SiteQuality
SIO_000300: 5.314e1

VQSLOD
type: SiteQuality
SIO_000300: -8.226e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

DP
type: SiteQuality
SIO_000300: 1.912277e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.062e0

QD
type: SiteQuality
SIO_000300: 1.566e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.097e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 834
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4169
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8349
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.516760200212346e-4
allele num: 6593
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9777
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47059
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.993e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.382e0

FS
type: SiteQuality
SIO_000300: 1.377e0

MQ
type: SiteQuality
SIO_000300: 5.072e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.269e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 1.918254e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.51e-1

QD
type: SiteQuality
SIO_000300: 8.57e0

GenotypeQuality
all individuals: 5433
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16539
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1849
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.274372371606984e-4
allele num: 47082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9195
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

QD
type: SiteQuality
SIO_000300: 1.32e1

VQSLOD
type: SiteQuality
SIO_000300: -1.652e0

DP
type: SiteQuality
SIO_000300: 1.922624e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

FS
type: SiteQuality
SIO_000300: 5.278e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQ
type: SiteQuality
SIO_000300: 4.764e1

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16542
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9783
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.123322575165619e-5
allele num: 47096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6593
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8351
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.22e1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-2

QD
type: SiteQuality
SIO_000300: 3.126e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

DP
type: SiteQuality
SIO_000300: 1.923791e6

MQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.864e0

GenotypeQuality
all individuals: 535
bin: 3.25e1
variant carriers: 504

GenotypeQuality
all individuals: 1763
bin: 5.25e1
variant carriers: 1736

GenotypeQuality
all individuals: 2776
bin: 7.75e1
variant carriers: 2738

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 27

GenotypeQuality
all individuals: 1021
bin: 5.75e1
variant carriers: 998

GenotypeQuality
all individuals: 567
bin: 4.25e1
variant carriers: 553

GenotypeQuality
all individuals: 2956
bin: 8.25e1
variant carriers: 2920

GenotypeQuality
all individuals: 1426
bin: 7.25e1
variant carriers: 1383

GenotypeQuality
all individuals: 146
bin: 1.75e1
variant carriers: 135

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 55

Latino
type: Population
allele count: 7721
allele frequency: 8.395128846362945e-1
allele num: 9197
num of homozygotes: 2501

South Asian
type: Population
allele count: 9845
allele frequency: 9.80675366072318e-1
allele num: 10039
num of homozygotes: 1799

Other
type: Population
allele count: 610
allele frequency: 9.854604200323102e-1
allele num: 619
num of homozygotes: 174

European (Finnish)
type: Population
allele count: 4349
allele frequency: 9.895335608646189e-1
allele num: 4395
num of homozygotes: 1193

European (Non-Finnish)
type: Population
allele count: 47417
allele frequency: 9.941921415691701e-1
allele num: 47694
num of homozygotes: 14428

East Asian
type: Population
allele count: 6551
allele frequency: 9.895770392749245e-1
allele num: 6620
num of homozygotes: 2259

African
type: Population
allele count: 6812
allele frequency: 8.088340061743053e-1
allele num: 8422
num of homozygotes: 2118

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.912e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.195e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.884e1

FS
type: SiteQuality
SIO_000300: 2.48e0

DP
type: SiteQuality
SIO_000300: 2.707169e6

MQ
type: SiteQuality
SIO_000300: 4.829e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

QD
type: SiteQuality
SIO_000300: 3.175e1

GenotypeQuality
all individuals: 589
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10334
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4172
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.12228612661559e-5
allele num: 47119
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9197
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8373
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4226
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.144e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.751e0

MQRankSum
type: SiteQuality
SIO_000300: -6.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.957887e6

MQ
type: SiteQuality
SIO_000300: 5.367e1

QD
type: SiteQuality
SIO_000300: 1.114e1

GenotypeQuality
all individuals: 2057
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.12630236019562e-5
allele num: 47030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9187
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6567
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.055e0

FS
type: SiteQuality
SIO_000300: 6.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.37e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.935e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.918148e6

MQ
type: SiteQuality
SIO_000300: 4.747e1