X-71831011-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831011
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831011
    reference: chr 0
allele count: 3
allele frequency: 3.48711510966977e-5
allele num: 86031
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2393T>C
  hgvsp: ENSP00000342469.3:p.Leu798Ser
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2216T>C
  hgvsp: ENSP00000362646.3:p.Leu739Ser
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2216T>C
  hgvsp: ENSP00000441251.1:p.Leu739Ser
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2393T>C
  hgvsp: ENSP00000362643.4:p.Leu798Ser
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2393T>C
  hgvsp: ENSP00000362640.3:p.Leu798Ser
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu798Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-71831013-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831013
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831013
    reference: chr 0
allele count: 10
allele frequency: 1.162750136623141e-4
allele num: 86003
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2214A>G
  hgvsp: ENST00000541944.1:c.2214A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2391A>G
  hgvsp: ENST00000339490.3:c.2391A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2214A>G
  hgvsp: ENST00000373545.3:c.2214A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2391A>G
  hgvsp: ENST00000373539.3:c.2391A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2391A>G
  hgvsp: ENST00000373542.4:c.2391A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 332
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genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu797Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

X-71831034-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831034
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831034
    reference: chr 0
allele count: 1
allele frequency: 1.172979249997068e-5
allele num: 85253
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2193A>G
  hgvsp: ENST00000373545.3:c.2193A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2370A>G
  hgvsp: ENST00000373539.3:c.2370A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2370A>G
  hgvsp: ENST00000373542.4:c.2370A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2370A>G
  hgvsp: ENST00000339490.3:c.2370A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2193A>G
  hgvsp: ENST00000541944.1:c.2193A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 327
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  variant carriers: 0
hgvs: c.2370A>G
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

X-71831046-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831046
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831046
    reference: chr 0
allele count: 2
allele frequency: 2.361777001015564e-5
allele num: 84682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2193-12T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2370-12T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2370-12T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2193-12T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2370-12T>C
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-71831047-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831047
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831047
    reference: chr 0
allele count: 10
allele frequency: 1.182424443078087e-4
allele num: 84572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2370-13G>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2370-13G>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2193-13G>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2370-13G>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2193-13G>A
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10009
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 386
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 664
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

X-71831048-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831048
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831048
    reference: chr 0
allele count: 24
allele frequency: 2.840337526776099e-4
allele num: 84497
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2193-14C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2370-14C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2370-14C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2193-14C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2370-14C>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9943
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1494
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

X-71831053-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831053
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831053
    reference: chr 0
allele count: 1
allele frequency: 1.18791651322745e-5
allele num: 84181
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2193-19C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2370-19C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2370-19C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2370-19C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2193-19C>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

X-71831054-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831054
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831054
    reference: chr 0
allele count: 1
allele frequency: 1.18766256131308e-5
allele num: 84199
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2193-20T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2370-20T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2370-20T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2193-20T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2370-20T>C
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS

X-71831059-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831059
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831059
    reference: chr 0
allele count: 1
allele frequency: 1.191369717764514e-5
allele num: 83937
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2370-25T>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2193-25T>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2370-25T>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2193-25T>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
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  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2370-25T>A
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
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site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
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site quality: QD

X-71831065-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831065
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831065
    reference: chr 0
allele count: 1
allele frequency: 1.19548584544759e-5
allele num: 83648
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2193-31A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2193-31A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
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  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2370-31A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
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  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2370-31A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000067177
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  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2370-31A>G
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-71831071-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831071
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831071
    reference: chr 0
allele count: 1
allele frequency: 1.202197617244323e-5
allele num: 83181
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2370-37A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2193-37A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
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  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2193-37A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000067177
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  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2370-37A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000067177
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  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2370-37A>G
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
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X-71831073-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831073
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831073
    reference: chr 0
allele count: 1
allele frequency: 1.205051576207462e-5
allele num: 82984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2193-39T>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2370-39T>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
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  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
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  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2370-39T>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
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  gene symbol: PHKA1
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  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
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  variant of: http://identifiers.org/hgnc/8925
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-71831086-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071831086
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071831086
    reference: chr 0
allele count: 1
allele frequency: 1.233319355713969e-5
allele num: 81082
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2370-52A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2370-52A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2193-52A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2370-52A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2193-52A>G
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 666
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-71838513-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838513
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838513
    reference: chr 0
allele count: 1
allele frequency: 1.151543067710732e-5
allele num: 86840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2192+47G>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2369+47G>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2369+47G>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2192+47G>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2369+47G>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 272
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

X-71838523-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838523
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838523
    reference: chr 0
allele count: 3
allele frequency: 3.451330487903087e-5
allele num: 86923
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2192+37A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2369+37A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2192+37A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2369+37A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2369+37A>G
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-71838529-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838529
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838529
    reference: chr 0
allele count: 1
allele frequency: 1.149359232228033e-5
allele num: 87005
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2192+31A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2369+31A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2192+31A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2369+31A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2369+31A>G
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

X-71838564-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838564
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838564
    reference: chr 0
allele count: 67
allele frequency: 7.662747609680224e-4
allele num: 87436
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2365A>G
  hgvsp: ENSP00000362640.3:p.Met789Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2188A>G
  hgvsp: ENSP00000362646.3:p.Met730Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2365A>G
  hgvsp: ENSP00000362643.4:p.Met789Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2188A>G
  hgvsp: ENSP00000441251.1:p.Met730Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2365A>G
  hgvsp: ENSP00000342469.3:p.Met789Val
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 3309
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
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genotype depth: GenotypeDepth
  all individuals: 11319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 544
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met789Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

X-71838583-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838583
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838583
    reference: chr 0
allele count: 1
allele frequency: 1.142295786070845e-5
allele num: 87543
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2346C>G
  hgvsp: ENSP00000362643.4:p.Ile782Met
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2169C>G
  hgvsp: ENSP00000362646.3:p.Ile723Met
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2346C>G
  hgvsp: ENSP00000342469.3:p.Ile782Met
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2346C>G
  hgvsp: ENSP00000362640.3:p.Ile782Met
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2169C>G
  hgvsp: ENSP00000441251.1:p.Ile723Met
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 15157
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  variant carriers: 0
hgvs: p.Ile782Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

X-71838590-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838590
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838590
    reference: chr 0
allele count: 4
allele frequency: 4.567565715851737e-5
allele num: 87574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2339C>T
  hgvsp: ENSP00000342469.3:p.Ala780Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2339C>T
  hgvsp: ENSP00000362643.4:p.Ala780Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2162C>T
  hgvsp: ENSP00000441251.1:p.Ala721Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2339C>T
  hgvsp: ENSP00000362640.3:p.Ala780Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2162C>T
  hgvsp: ENSP00000362646.3:p.Ala721Val
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ala780Val
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-71838594-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838594
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838594
    reference: chr 0
allele count: 5
allele frequency: 5.709196373518463e-5
allele num: 87578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2158C>A
  hgvsp: ENSP00000362646.3:p.Gln720Lys
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2335C>A
  hgvsp: ENSP00000342469.3:p.Gln779Lys
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2335C>A
  hgvsp: ENSP00000362643.4:p.Gln779Lys
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2158C>A
  hgvsp: ENSP00000441251.1:p.Gln720Lys
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2335C>A
  hgvsp: ENSP00000362640.3:p.Gln779Lys
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln779Lys
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

X-71838595-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838595
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838595
    reference: chr 0
allele count: 1
allele frequency: 1.141839274703693e-5
allele num: 87578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2157A>G
  hgvsp: ENST00000373545.3:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2334A>G
  hgvsp: ENST00000339490.3:c.2334A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2334A>G
  hgvsp: ENST00000373539.3:c.2334A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2334A>G
  hgvsp: ENST00000373542.4:c.2334A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2157A>G
  hgvsp: ENST00000541944.1:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15212
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 3432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
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genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
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genotype quality: GenotypeQuality
  all individuals: 23
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genotype quality: GenotypeQuality
  all individuals: 2193
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu778Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-71838604-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838604
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838604
    reference: chr 0
allele count: 1
allele frequency: 1.14185231282186e-5
allele num: 87577
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2325C>T
  hgvsp: ENST00000373542.4:c.2325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2325C>T
  hgvsp: ENST00000373539.3:c.2325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2148C>T
  hgvsp: ENST00000373545.3:c.2148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2325C>T
  hgvsp: ENST00000339490.3:c.2325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2148C>T
  hgvsp: ENST00000541944.1:c.2148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15168
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
  all individuals: 7
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genotype quality: GenotypeQuality
  all individuals: 17
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genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27507
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser775Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

X-71838613-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838613
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838613
    reference: chr 0
allele count: 1
allele frequency: 1.141708909896333e-5
allele num: 87588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2316G>A
  hgvsp: ENST00000373539.3:c.2316G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2139G>A
  hgvsp: ENST00000373545.3:c.2139G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2316G>A
  hgvsp: ENST00000339490.3:c.2316G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2139G>A
  hgvsp: ENST00000541944.1:c.2139G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2316G>A
  hgvsp: ENST00000373542.4:c.2316G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27508
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
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genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
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genotype quality: GenotypeQuality
  all individuals: 3429
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 37
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genotype quality: GenotypeQuality
  all individuals: 43
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genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu772Glu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

X-71838638-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838638
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838638
    reference: chr 0
allele count: 3
allele frequency: 3.425283156740957e-5
allele num: 87584
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2114A>G
  hgvsp: ENSP00000362646.3:p.Lys705Arg
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2291A>G
  hgvsp: ENSP00000362640.3:p.Lys764Arg
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2291A>G
  hgvsp: ENSP00000362643.4:p.Lys764Arg
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2291A>G
  hgvsp: ENSP00000342469.3:p.Lys764Arg
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2114A>G
  hgvsp: ENSP00000441251.1:p.Lys705Arg
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11004
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4890
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3425
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys764Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

X-71838643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838643
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838643
    reference: chr 0
allele count: 1
allele frequency: 1.141734980476332e-5
allele num: 87586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2109C>T
  hgvsp: ENST00000373545.3:c.2109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2109C>T
  hgvsp: ENST00000541944.1:c.2109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2286C>T
  hgvsp: ENST00000373539.3:c.2286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2286C>T
  hgvsp: ENST00000339490.3:c.2286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2286C>T
  hgvsp: ENST00000373542.4:c.2286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 399
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 808
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1560
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp762Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

X-71838661-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838661
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838661
    reference: chr 0
allele count: 1
allele frequency: 1.141800162135623e-5
allele num: 87581
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2268C>A
  hgvsp: ENSP00000342469.3:p.Asp756Glu
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2268C>A
  hgvsp: ENSP00000362643.4:p.Asp756Glu
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2091C>A
  hgvsp: ENSP00000441251.1:p.Asp697Glu
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2268C>A
  hgvsp: ENSP00000362640.3:p.Asp756Glu
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2091C>A
  hgvsp: ENSP00000362646.3:p.Asp697Glu
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2966
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genotype depth: GenotypeDepth
  all individuals: 544
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp756Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

X-71838662-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838662
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838662
    reference: chr 0
allele count: 16
allele frequency: 1.826942839525908e-4
allele num: 87578
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2267A>C
  hgvsp: ENSP00000362643.4:p.Asp756Ala
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2267A>C
  hgvsp: ENSP00000342469.3:p.Asp756Ala
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2090A>C
  hgvsp: ENSP00000362646.3:p.Asp697Ala
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2090A>C
  hgvsp: ENSP00000441251.1:p.Asp697Ala
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2267A>C
  hgvsp: ENSP00000362640.3:p.Asp756Ala
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 142
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
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genotype depth: GenotypeDepth
  all individuals: 7860
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp756Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

X-71838676-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838676
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838676
    reference: chr 0
allele count: 4
allele frequency: 4.568870004226205e-5
allele num: 87549
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2253A>G
  hgvsp: ENSP00000362640.3:p.Ile751Met
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2076A>G
  hgvsp: ENSP00000441251.1:p.Ile692Met
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2076A>G
  hgvsp: ENSP00000362646.3:p.Ile692Met
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2253A>G
  hgvsp: ENSP00000362643.4:p.Ile751Met
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2253A>G
  hgvsp: ENSP00000342469.3:p.Ile751Met
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile751Met
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-71838690-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838690
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838690
    reference: chr 0
allele count: 1
allele frequency: 1.143000834390609e-5
allele num: 87489
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2239G>C
  hgvsp: ENSP00000362643.4:p.Val747Leu
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2062G>C
  hgvsp: ENSP00000362646.3:p.Val688Leu
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2239G>C
  hgvsp: ENSP00000362640.3:p.Val747Leu
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2239G>C
  hgvsp: ENSP00000342469.3:p.Val747Leu
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2062G>C
  hgvsp: ENSP00000441251.1:p.Val688Leu
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14979
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  variant carriers: 0
hgvs: p.Val747Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

X-71838704-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838704
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838704
    reference: chr 0
allele count: 1
allele frequency: 1.144452837098583e-5
allele num: 87378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2230-5T>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2230-5T>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2053-5T>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2230-5T>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2053-5T>G
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14675
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  variant carriers: 0
hgvs: c.2230-5T>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

X-71838717-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838717
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838717
    reference: chr 0
allele count: 2
allele frequency: 2.292421255329879e-5
allele num: 87244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2053-18T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2230-18T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2053-18T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2230-18T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2230-18T>C
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10044
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genotype depth: GenotypeDepth
  all individuals: 1588
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

X-71838719-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071838719
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071838719
    reference: chr 0
allele count: 3
allele frequency: 3.438986645268527e-5
allele num: 87235
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2230-20C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2230-20C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2230-20C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2053-20C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2053-20C>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

X-71839013-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839013
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839013
    reference: chr 0
allele count: 1
allele frequency: 1.790510295434199e-5
allele num: 55850
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2229+51T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2229+51T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2052+51T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2229+51T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2052+51T>C
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

X-71839014-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839014
    reference: chr 0
allele count: 2
allele frequency: 3.592921943770772e-5
allele num: 55665
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2052+50C>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2229+50C>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2229+50C>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2229+50C>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2052+50C>G
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-71839019-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839019
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839019
    reference: chr 0
allele count: 1
allele frequency: 1.793786324173065e-5
allele num: 55748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2052+45G>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2229+45G>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2229+45G>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2229+45G>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2052+45G>A
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7042
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

X-71839026-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839026
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839026
    reference: chr 0
allele count: 1
allele frequency: 1.771165426850868e-5
allele num: 56460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2052+38A>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2229+38A>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2052+38A>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2229+38A>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2229+38A>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum

X-71839026-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839026
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839026
    reference: chr 0
allele count: 1
allele frequency: 1.771165426850868e-5
allele num: 56460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2229+38A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2229+38A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2229+38A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2052+38A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2052+38A>G
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-71839027-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839027
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839027
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 56303
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2229+37G>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2229+37G>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2229+37G>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2052+37G>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2052+37G>C
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

X-71839040-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839040
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839040
    reference: chr 0
allele count: 20
allele frequency: 3.384209279501844e-4
allele num: 59098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2229+24C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2229+24C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2052+24C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2229+24C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2052+24C>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 472
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

X-71839049-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839049
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839049
    reference: chr 0
allele count: 51
allele frequency: 8.111203002735543e-4
allele num: 62876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2052+15G>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2229+15G>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2229+15G>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2052+15G>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2229+15G>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 248
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num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

X-71839075-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839075
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839075
    reference: chr 0
allele count: 1
allele frequency: 1.382380182197708e-5
allele num: 72339
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2218C>A
  hgvsp: ENSP00000362643.4:p.Gln740Lys
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2218C>A
  hgvsp: ENSP00000342469.3:p.Gln740Lys
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2041C>A
  hgvsp: ENSP00000441251.1:p.Gln681Lys
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2041C>A
  hgvsp: ENSP00000362646.3:p.Gln681Lys
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2218C>A
  hgvsp: ENSP00000362640.3:p.Gln740Lys
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 290
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  variant carriers: 0
hgvs: p.Gln740Lys
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ

X-71839077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839077
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839077
    reference: chr 0
allele count: 3
allele frequency: 4.123938085942869e-5
allele num: 72746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2039G>A
  hgvsp: ENSP00000362646.3:p.Arg680Gln
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2216G>A
  hgvsp: ENSP00000342469.3:p.Arg739Gln
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2216G>A
  hgvsp: ENSP00000362643.4:p.Arg739Gln
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2039G>A
  hgvsp: ENSP00000441251.1:p.Arg680Gln
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2216G>A
  hgvsp: ENSP00000362640.3:p.Arg739Gln
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28851
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg739Gln
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-71839081-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839081
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839081
    reference: chr 0
allele count: 11
allele frequency: 1.490858327799086e-4
allele num: 73783
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2035C>A
  hgvsp: ENSP00000362646.3:p.Pro679Thr
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2035C>A
  hgvsp: ENSP00000441251.1:p.Pro679Thr
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2212C>A
  hgvsp: ENSP00000362643.4:p.Pro738Thr
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2212C>A
  hgvsp: ENSP00000362640.3:p.Pro738Thr
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2212C>A
  hgvsp: ENSP00000342469.3:p.Pro738Thr
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro738Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

X-71839113-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839113
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839113
    reference: chr 0
allele count: 14
allele frequency: 1.864032167869411e-4
allele num: 75106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2003G>A
  hgvsp: ENSP00000362646.3:p.Arg668Gln
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2180G>A
  hgvsp: ENSP00000342469.3:p.Arg727Gln
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2180G>A
  hgvsp: ENSP00000362643.4:p.Arg727Gln
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2003G>A
  hgvsp: ENSP00000441251.1:p.Arg668Gln
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2180G>A
  hgvsp: ENSP00000362640.3:p.Arg727Gln
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28495
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13315
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Arg727Gln
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS

X-71839114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839114
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839114
    reference: chr 0
allele count: 15
allele frequency: 2.0e-4
allele num: 75000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2179C>T
  hgvsp: ENSP00000342469.3:p.Arg727Trp
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.2002C>T
  hgvsp: ENSP00000362646.3:p.Arg668Trp
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2179C>T
  hgvsp: ENSP00000362643.4:p.Arg727Trp
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.2002C>T
  hgvsp: ENSP00000441251.1:p.Arg668Trp
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2179C>T
  hgvsp: ENSP00000362640.3:p.Arg727Trp
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28219
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8175
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33237
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3695
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg727Trp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

X-71839120-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839120
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839120
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 74420
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2173G>C
  hgvsp: ENSP00000342469.3:p.Ala725Pro
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2173G>C
  hgvsp: ENSP00000362643.4:p.Ala725Pro
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1996G>C
  hgvsp: ENSP00000362646.3:p.Ala666Pro
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1996G>C
  hgvsp: ENSP00000441251.1:p.Ala666Pro
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2173G>C
  hgvsp: ENSP00000362640.3:p.Ala725Pro
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32085
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14626
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala725Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

X-71839131-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839131
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839131
    reference: chr 0
allele count: 5
allele frequency: 6.854009595613433e-5
allele num: 72950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2162A>G
  hgvsp: ENSP00000342469.3:p.Lys721Arg
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1985A>G
  hgvsp: ENSP00000362646.3:p.Lys662Arg
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1985A>G
  hgvsp: ENSP00000441251.1:p.Lys662Arg
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2162A>G
  hgvsp: ENSP00000362643.4:p.Lys721Arg
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2162A>G
  hgvsp: ENSP00000362640.3:p.Lys721Arg
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17059
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys721Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

X-71839133-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839133
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839133
    reference: chr 0
allele count: 1
allele frequency: 1.377448414556875e-5
allele num: 72598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2160G>C
  hgvsp: ENST00000339490.3:c.2160G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1983G>C
  hgvsp: ENST00000541944.1:c.1983G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1983G>C
  hgvsp: ENST00000373545.3:c.1983G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2160G>C
  hgvsp: ENST00000373542.4:c.2160G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2160G>C
  hgvsp: ENST00000373539.3:c.2160G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 297
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28908
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genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17493
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr720Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-71839133-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839133
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839133
    reference: chr 0
allele count: 5
allele frequency: 6.887242072784375e-5
allele num: 72598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2160G>A
  hgvsp: ENST00000373539.3:c.2160G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1983G>A
  hgvsp: ENST00000373545.3:c.1983G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1983G>A
  hgvsp: ENST00000541944.1:c.1983G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2160G>A
  hgvsp: ENST00000373542.4:c.2160G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2160G>A
  hgvsp: ENST00000339490.3:c.2160G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr720Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

X-71839136-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839136
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839136
    reference: chr 0
allele count: 1
allele frequency: 1.389854065323141e-5
allele num: 71950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1980T>C
  hgvsp: ENST00000373545.3:c.1980T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1980T>C
  hgvsp: ENST00000541944.1:c.1980T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2157T>C
  hgvsp: ENST00000373542.4:c.2157T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2157T>C
  hgvsp: ENST00000373539.3:c.2157T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2157T>C
  hgvsp: ENST00000339490.3:c.2157T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro719Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff

X-71839138-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839138
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839138
    reference: chr 0
allele count: 1
allele frequency: 1.399090591115775e-5
allele num: 71475
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1978C>A
  hgvsp: ENSP00000362646.3:p.Pro660Thr
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2155C>A
  hgvsp: ENSP00000362643.4:p.Pro719Thr
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2155C>A
  hgvsp: ENSP00000342469.3:p.Pro719Thr
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1978C>A
  hgvsp: ENSP00000441251.1:p.Pro660Thr
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2155C>A
  hgvsp: ENSP00000362640.3:p.Pro719Thr
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro719Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-71839145-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839145
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839145
    reference: chr 0
allele count: 2
allele frequency: 2.86697247706422e-5
allele num: 69760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1971G>C
  hgvsp: ENSP00000441251.1:p.Met657Ile
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2148G>C
  hgvsp: ENSP00000362640.3:p.Met716Ile
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2148G>C
  hgvsp: ENSP00000342469.3:p.Met716Ile
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1971G>C
  hgvsp: ENSP00000362646.3:p.Met657Ile
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2148G>C
  hgvsp: ENSP00000362643.4:p.Met716Ile
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 94
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  variant carriers: 0
hgvs: p.Met716Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

X-71839146-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839146
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839146
    reference: chr 0
allele count: 1
allele frequency: 1.432705808189346e-5
allele num: 69798
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2147T>C
  hgvsp: ENSP00000342469.3:p.Met716Thr
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2147T>C
  hgvsp: ENSP00000362643.4:p.Met716Thr
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1970T>C
  hgvsp: ENSP00000441251.1:p.Met657Thr
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1970T>C
  hgvsp: ENSP00000362646.3:p.Met657Thr
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2147T>C
  hgvsp: ENSP00000362640.3:p.Met716Thr
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 52
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  variant carriers: 0
hgvs: p.Met716Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

X-71839147-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839147
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839147
    reference: chr 0
allele count: 1
allele frequency: 1.449023358256535e-5
allele num: 69012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1969A>G
  hgvsp: ENSP00000441251.1:p.Met657Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2146A>G
  hgvsp: ENSP00000342469.3:p.Met716Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2146A>G
  hgvsp: ENSP00000362640.3:p.Met716Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1969A>G
  hgvsp: ENSP00000362646.3:p.Met657Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2146A>G
  hgvsp: ENSP00000362643.4:p.Met716Val
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Met716Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP

X-71839171-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839171
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839171
    reference: chr 0
allele count: 2
allele frequency: 3.292885720401074e-5
allele num: 60737
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-16T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2138-16T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-16T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2138-16T>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2138-16T>C
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 297
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

X-71839188-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839188
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839188
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 52270
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2138-33C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2138-33C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2138-33C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-33C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-33C>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17435
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11553
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3611
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

X-71839188-GGTAATTAGGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839188
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839178
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 52270
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 17435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15220
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: GGTAATTAGGA
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

X-71839189-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839189
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839189
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 51006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-34C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2138-34C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2138-34C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-34C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2138-34C>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17844
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3717
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19134
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

X-71839189-G-GAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839189
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839191
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 51006
alternate allele: GAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2138-35_2138-34insGT
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-35_1961-34insGT
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-35_1961-34insGT
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2138-35_2138-34insGT
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2138-35_2138-34insGT
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3717
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11935
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

X-71839191-A-AGTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839191
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839194
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 49940
alternate allele: AGTC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2138-37_2138-36insGAC
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-37_1961-36insGAC
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2138-37_2138-36insGAC
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2138-37_2138-36insGAC
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-37_1961-36insGAC
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11192
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 146
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genotype depth: GenotypeDepth
  all individuals: 182
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18683
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

X-71839193-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839193
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839193
    reference: chr 0
allele count: 1
allele frequency: 2.044864323252152e-5
allele num: 48903
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-38A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2138-38A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2138-38A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-38A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2138-38A>G
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 174
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

X-71839205-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071839205
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071839205
    reference: chr 0
allele count: 1
allele frequency: 2.262136361579876e-5
allele num: 44206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-50A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-50A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2138-50A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2138-50A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2138-50A>G
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-71840553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071840553
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071840553
    reference: chr 0
allele count: 2
allele frequency: 2.387176090044282e-5
allele num: 83781
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-1398C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2137+22C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2137+22C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2137+22C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-1398C>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

X-71840558-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071840558
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071840558
    reference: chr 0
allele count: 1
allele frequency: 1.18850949024828e-5
allele num: 84139
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-1403C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-1403C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2137+17C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2137+17C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2137+17C>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 80
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 141
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genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 90
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genotype depth: GenotypeDepth
  all individuals: 117
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genotype depth: GenotypeDepth
  all individuals: 1828
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 98
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genotype depth: GenotypeDepth
  all individuals: 228
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 580
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genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 64
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 586
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-71840563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071840563
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071840563
    reference: chr 0
allele count: 3
allele frequency: 3.550505947097461e-5
allele num: 84495
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2137+12C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-1408C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-1408C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2137+12C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2137+12C>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24708
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genotype depth: GenotypeDepth
  all individuals: 80
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 228
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1838
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 63
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

X-71840576-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071840576
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071840576
    reference: chr 0
allele count: 1
allele frequency: 1.169754819389856e-5
allele num: 85488
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2136G>A
  hgvsp: ENST00000373542.4:c.2136G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2136G>A
  hgvsp: ENST00000339490.3:c.2136G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-1421G>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-1421G>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2136G>A
  hgvsp: ENST00000373539.3:c.2136G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.2136G>A
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

X-71840600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071840600
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071840600
    reference: chr 0
allele count: 6
allele frequency: 6.943801499861123e-5
allele num: 86408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-1445C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2112C>T
  hgvsp: ENST00000373539.3:c.2112C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2112C>T
  hgvsp: ENST00000373542.4:c.2112C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2112C>T
  hgvsp: ENST00000339490.3:c.2112C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-1445C>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr704Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-71840619-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071840619
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071840619
    reference: chr 0
allele count: 2
allele frequency: 2.306911506874596e-5
allele num: 86696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-1464A>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2093A>T
  hgvsp: ENSP00000362640.3:p.Asp698Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2093A>T
  hgvsp: ENSP00000362643.4:p.Asp698Val
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-1464A>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2093A>T
  hgvsp: ENSP00000342469.3:p.Asp698Val
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18864
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28022
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 18
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genotype quality: GenotypeQuality
  all individuals: 515
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
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genotype quality: GenotypeQuality
  all individuals: 237
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp698Val
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

X-71840621-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071840621
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071840621
    reference: chr 0
allele count: 3
allele frequency: 3.459968168292851e-5
allele num: 86706
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2091C>T
  hgvsp: ENST00000373542.4:c.2091C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-1466C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2091C>T
  hgvsp: ENST00000373539.3:c.2091C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2091C>T
  hgvsp: ENST00000339490.3:c.2091C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-1466C>T
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
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genotype quality: GenotypeQuality
  all individuals: 1305
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genotype quality: GenotypeQuality
  all individuals: 266
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genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys697Cys
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

X-71840624-GGTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071840624
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071840621
    reference: chr 0
allele count: 1
allele frequency: 1.153163126455868e-5
allele num: 86718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-1472_1961-1470delAAC
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2085_2087delAAC
  hgvsp: ENSP00000362640.3:p.Thr696del
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2085_2087delAAC
  hgvsp: ENSP00000362643.4:p.Thr696del
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-1472_1961-1470delAAC
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2085_2087delAAC
  hgvsp: ENSP00000342469.3:p.Thr696del
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27931
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 45715
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr696del
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: GGTT
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

X-71840649-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071840649
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071840649
    reference: chr 0
allele count: 7
allele frequency: 8.080808080808081e-5
allele num: 86625
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-1494G>A
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2063G>A
  hgvsp: ENSP00000362640.3:p.Arg688Gln
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2063G>A
  hgvsp: ENSP00000362643.4:p.Arg688Gln
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2063G>A
  hgvsp: ENSP00000342469.3:p.Arg688Gln
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-1494G>A
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8042
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19431
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1009
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 522
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg688Gln
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

X-71840650-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071840650
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071840650
    reference: chr 0
allele count: 3
allele frequency: 3.462603878116344e-5
allele num: 86640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-1495C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2062C>T
  hgvsp: ENSP00000342469.3:p.Arg688Trp
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2062C>T
  hgvsp: ENSP00000362643.4:p.Arg688Trp
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-1495C>T
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2062C>T
  hgvsp: ENSP00000362640.3:p.Arg688Trp
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44439
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg688Trp
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

X-71840652-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071840652
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071840652
    reference: chr 0
allele count: 1
allele frequency: 1.154214614665451e-5
allele num: 86639
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2060A>G
  hgvsp: ENSP00000342469.3:p.Asp687Gly
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2060A>G
  hgvsp: ENSP00000362640.3:p.Asp687Gly
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-1497A>G
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2060A>G
  hgvsp: ENSP00000362643.4:p.Asp687Gly
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-1497A>G
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7282
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp687Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-71840653-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24071840653
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24071840653
    reference: chr 0
allele count: 1
allele frequency: 1.154854430599023e-5
allele num: 86591
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362646
  ensembl transcript: ENST00000373545
  gene symbol: PHKA1
  hgvsc: ENST00000373545.3:c.1961-1498G>C
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000342469
  ensembl transcript: ENST00000339490
  gene symbol: PHKA1
  hgvsc: ENST00000339490.3:c.2059G>C
  hgvsp: ENSP00000342469.3:p.Asp687His
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362643
  ensembl transcript: ENST00000373542
  gene symbol: PHKA1
  hgvsc: ENST00000373542.4:c.2059G>C
  hgvsp: ENSP00000362643.4:p.Asp687His
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000362640
  ensembl transcript: ENST00000373539
  gene symbol: PHKA1
  hgvsc: ENST00000373539.3:c.2059G>C
  hgvsp: ENSP00000362640.3:p.Asp687His
  variant of: http://identifiers.org/hgnc/8925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067177
  ensembl protein: ENSP00000441251
  ensembl transcript: ENST00000541944
  gene symbol: PHKA1
  hgvsc: ENST00000541944.1:c.1961-1498G>C
  variant of: http://identifiers.org/hgnc/8925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp687His
num of homozygotes: 0
population: South Asian
reference allele: C

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44909
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6581
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47159
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9108
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.083564600678384e-4
allele num: 9729
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8391
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.22e-2

QD
type: SiteQuality
SIO_000300: 3.337e1

DP
type: SiteQuality
SIO_000300: 1.508683e6

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44834
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 307
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4449
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9727
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 1.097935880544576e-3
allele num: 9108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47141
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.06e-2

FS
type: SiteQuality
SIO_000300: 1.137e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

QD
type: SiteQuality
SIO_000300: 1.696e1

DP
type: SiteQuality
SIO_000300: 1.507805e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.72e-1

GenotypeQuality
all individuals: 331
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42024
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9061
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4415
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46692
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.204093919325707e-4
allele num: 8305
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.49e-1

DP
type: SiteQuality
SIO_000300: 1.473441e6

QD
type: SiteQuality
SIO_000300: 1.501e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeQuality
all individuals: 38793
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 3449
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9041
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4391
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46338
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.093802345058626e-4
allele num: 9552
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.281e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e0

FS
type: SiteQuality
SIO_000300: 1.3917e1

VQSLOD
type: SiteQuality
SIO_000300: -2.5e0

DP
type: SiteQuality
SIO_000300: 1.433128e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

GenotypeQuality
all individuals: 38195
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 444
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.482141699617554e-5
allele num: 46281
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.151007227433493e-4
allele num: 6503
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.09819555182543e-4
allele num: 9532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.214919207872676e-4
allele num: 8231
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9037
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4387
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.444e1

DP
type: SiteQuality
SIO_000300: 1.429179e6

FS
type: SiteQuality
SIO_000300: 6.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.76e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
all individuals: 443
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6495
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.488310227739689e-5
allele num: 46237
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8223
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 2.205419029615627e-3
allele num: 9522
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.55e-1

DP
type: SiteQuality
SIO_000300: 1.425208e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e0

QD
type: SiteQuality
SIO_000300: 1.765e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.859999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

GenotypeQuality
all individuals: 858
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9011
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.227445685528415e-4
allele num: 8147
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9495
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

DP
type: SiteQuality
SIO_000300: 1.396031e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.003e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 7.47e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 6.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3448
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1968
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GenotypeQuality
all individuals: 1238
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.543686322939179e-4
allele num: 6478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46095
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9495
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.41e0

VQSLOD
type: SiteQuality
SIO_000300: -6.653e-1

DP
type: SiteQuality
SIO_000300: 1.39572e6

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.569e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 9.26e-1

GenotypeQuality
all individuals: 32314
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3328
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45953
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8985
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.230920728705071e-4
allele num: 8124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4361
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.133e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.365622e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e0

FS
type: SiteQuality
SIO_000300: 1.494e1

QD
type: SiteQuality
SIO_000300: 1.271e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.115200178432029e-4
allele num: 8967
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9429
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.214e0

QD
type: SiteQuality
SIO_000300: 1.552e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.336689e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.761e0

VQSLOD
type: SiteQuality
SIO_000300: -1.461e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45529
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4333
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.118443127166984e-4
allele num: 8941
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.903e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.334e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 1.30579e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4321
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9337
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6385
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.202352112055675e-5
allele num: 45406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8933
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-2

DP
type: SiteQuality
SIO_000300: 1.296094e6

QD
type: SiteQuality
SIO_000300: 8.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.892e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44273
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 7831
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4265
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
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East Asian
type: Population
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allele frequency: 1.610824742268041e-4
allele num: 6208
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.2902e6

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2473
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096919625070771e-5
allele num: 47689
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.609653e6

MQ
type: SiteQuality
SIO_000300: 5.866e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.244646333549643e-4
allele num: 9246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4513
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47718
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.647e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.49e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

FS
type: SiteQuality
SIO_000300: 5.181e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.32e-1

DP
type: SiteQuality
SIO_000300: 2.627924e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

GenotypeQuality
all individuals: 27515
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2517
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3369
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.023017902813299e-4
allele num: 9775
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9251
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.636904e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.041e0

QD
type: SiteQuality
SIO_000300: 2.116e1

VQSLOD
type: SiteQuality
SIO_000300: -3.224e0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27528
bin: 9.75e1
variant carriers: 64

GenotypeQuality
all individuals: 3421
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1560
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 5.846610010231567e-4
allele num: 47891
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175502527330434e-4
allele num: 8507
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9267
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 38
allele frequency: 8.407079646017699e-3
allele num: 4520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9991
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.088e-1

FS
type: SiteQuality
SIO_000300: 1.222e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e0

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

DP
type: SiteQuality
SIO_000300: 2.666068e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 2.126e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.84e-1

QD
type: SiteQuality
SIO_000300: 1.96e1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27510
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3432
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2528
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175226231049477e-4
allele num: 8509
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10053
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.232e1

VQSLOD
type: SiteQuality
SIO_000300: 9.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.23e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

DP
type: SiteQuality
SIO_000300: 2.666503e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15170
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27513
bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.987478883036868e-4
allele num: 10063
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.172316678835923e-5
allele num: 47935
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-1

FS
type: SiteQuality
SIO_000300: 4.006e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.372e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.667318e6

MQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.477e-1

QD
type: SiteQuality
SIO_000300: 2.061e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

GenotypeQuality
all individuals: 4898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2528
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 27512
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.986491855383393e-4
allele num: 10068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.258213905751299e-5
allele num: 47937
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.581e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

FS
type: SiteQuality
SIO_000300: 2.527e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

QD
type: SiteQuality
SIO_000300: 2.555e1

VQSLOD
type: SiteQuality
SIO_000300: 1.516e1

DP
type: SiteQuality
SIO_000300: 2.66756e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.451e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

GenotypeQuality
all individuals: 2527
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27509
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 182
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086027785890108e-5
allele num: 47938
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.536e0

MQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 2.667369e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.34e-1

QD
type: SiteQuality
SIO_000300: 3.085e1

GenotypeQuality
all individuals: 2192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4909
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086158339417962e-5
allele num: 47935
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.172e0

DP
type: SiteQuality
SIO_000300: 2.667608e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.01e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

MQRankSum
type: SiteQuality
SIO_000300: -7.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.196e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.56e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2527
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085940759282436e-5
allele num: 47940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.175e0

QD
type: SiteQuality
SIO_000300: 1.477e1

DP
type: SiteQuality
SIO_000300: 2.667896e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

VQSLOD
type: SiteQuality
SIO_000300: 6.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.08e-1

GenotypeQuality
all individuals: 14991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27511
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2972
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47933
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.977076510866329e-4
allele num: 10077
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9273
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.25e0

DP
type: SiteQuality
SIO_000300: 2.667915e6

VQSLOD
type: SiteQuality
SIO_000300: -1.459e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.81e-1

FS
type: SiteQuality
SIO_000300: 3.453e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.64e-2

QD
type: SiteQuality
SIO_000300: 2.098e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2970
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.668e-1

DP
type: SiteQuality
SIO_000300: 2.668084e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 2.782e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.364e0

QD
type: SiteQuality
SIO_000300: 1.778e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.51e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

GenotypeQuality
all individuals: 2191
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27509
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 9.924573243350536e-5
allele num: 10076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47932
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

QD
type: SiteQuality
SIO_000300: 2.937e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.74e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.697e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.33e-1

DP
type: SiteQuality
SIO_000300: 2.668799e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
all individuals: 1557
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27509
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 15008
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2970
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47931
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 2.41145440844009e-3
allele num: 6635
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.49e0

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.54e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 4.68e0

DP
type: SiteQuality
SIO_000300: 2.670309e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.87e-2

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27510
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4881
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.346897041024999e-5
allele num: 47922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.466e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.91e-2

FS
type: SiteQuality
SIO_000300: 6.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.63e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 2.669259e6

MQRankSum
type: SiteQuality
SIO_000300: -1.675e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 3.219e1

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3420
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087987806151212e-5
allele num: 47893
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10065
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.13e-1

DP
type: SiteQuality
SIO_000300: 2.667375e6

FS
type: SiteQuality
SIO_000300: 1.799e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.496e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

QD
type: SiteQuality
SIO_000300: 8.25e0

GenotypeQuality
all individuals: 2964
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27509
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09003887472307e-5
allele num: 47846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9255
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: -2.201e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

FS
type: SiteQuality
SIO_000300: 1.086e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

QD
type: SiteQuality
SIO_000300: 2.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

DP
type: SiteQuality
SIO_000300: 2.663129e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.429e0

GenotypeQuality
all individuals: 258
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.024345985180705e-4
allele num: 6613
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9251
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.432e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

FS
type: SiteQuality
SIO_000300: 3.497e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

DP
type: SiteQuality
SIO_000300: 2.653442e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3378
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4689
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.190334483990001e-4
allele num: 8401
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9253
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.993223041658362e-4
allele num: 10034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47784
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.873e1

DP
type: SiteQuality
SIO_000300: 2.653349e6

MQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.59e-2

FS
type: SiteQuality
SIO_000300: 2.291e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.382e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 4009
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5209
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4071
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3021
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6647
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.441037817005609e-5
allele num: 29061
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6417
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6205
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 9.65353e5

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11427
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GenotypeQuality
all individuals: 6360
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2997
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 427
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6415
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6183
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.903931789153924e-5
allele num: 28969
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.226e0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: 5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

FS
type: SiteQuality
SIO_000300: 6.52e-1

QD
type: SiteQuality
SIO_000300: 1.284e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.788e0

DP
type: SiteQuality
SIO_000300: 9.66322e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.450417500517563e-5
allele num: 28982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4067
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.551e1

DP
type: SiteQuality
SIO_000300: 9.76416e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.647e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3051
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29389
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6463
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6735
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 433
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.599744040953447e-4
allele num: 6251
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

QD
type: SiteQuality
SIO_000300: 1.662e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.338e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.99693e5

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2528
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6735
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6251
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 433
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.40263363843615e-5
allele num: 29389
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3051
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6463
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

QD
type: SiteQuality
SIO_000300: 1.662e1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

DP
type: SiteQuality
SIO_000300: 9.99693e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.338e0

GenotypeQuality
all individuals: 718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3031
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6707
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4117
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

DP
type: SiteQuality
SIO_000300: 1.005229e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

QD
type: SiteQuality
SIO_000300: 2.141e1

VQSLOD
type: SiteQuality
SIO_000300: -2.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 17397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20274
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3161
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 2.771362586605081e-3
allele num: 6495
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4451
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.842928216062544e-4
allele num: 7035
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.72e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-2

FS
type: SiteQuality
SIO_000300: 1.906e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.097817e6

GenotypeQuality
all individuals: 280
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 657
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22406
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 554
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.023340186237756e-5
allele num: 33076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4895
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7457
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 469
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6823
num of homozygotes: 0

South Asian
type: Population
allele count: 50
allele frequency: 7.318501170960188e-3
allele num: 6832
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 1.364e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.12e-2

QD
type: SiteQuality
SIO_000300: 1.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.383e0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 1.171613e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 927
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 283
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variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5763
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7587
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7525
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.578715284045488e-5
allele num: 38779
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3763
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 1.153e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.278e0

FS
type: SiteQuality
SIO_000300: 3.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.54e-2

DP
type: SiteQuality
SIO_000300: 1.325636e6

MQRankSum
type: SiteQuality
SIO_000300: -1.052e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
all individuals: 485
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 284
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variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.726817475392851e-4
allele num: 5791
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.120589891955553e-5
allele num: 39058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3777
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7569
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8409
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 535
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.334321e6

MQRankSum
type: SiteQuality
SIO_000300: -1.055e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.28e-1

FS
type: SiteQuality
SIO_000300: 3.36e0

QD
type: SiteQuality
SIO_000300: 1.137e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2923
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
all individuals: 827
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variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33560
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 539
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5875
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7699
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.295641931684334e-3
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39701
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7657
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.67e0

QD
type: SiteQuality
SIO_000300: 1.395e1

DP
type: SiteQuality
SIO_000300: 1.34813e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.506e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

FS
type: SiteQuality
SIO_000300: 1.952e0

GenotypeQuality
all individuals: 220
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3694
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 566
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33490
bin: 6.25e1
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GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8567
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 549
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.33667000333667e-4
allele num: 5994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.468221646303838e-4
allele num: 40515
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7815
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 5.149330587023687e-4
allele num: 3884
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.367e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

DP
type: SiteQuality
SIO_000300: 1.366615e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.92e-2

FS
type: SiteQuality
SIO_000300: 1.126e0

GenotypeQuality
all individuals: 409
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13399
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
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GenotypeQuality
all individuals: 438
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variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.575328354365182e-4
allele num: 3883
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.168087840205584e-4
allele num: 8561
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5977
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.280573697016263e-4
allele num: 7809
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.285016705217168e-4
allele num: 7782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.472799208704253e-4
allele num: 40440
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.824817518248175e-3
allele num: 548
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.37e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

DP
type: SiteQuality
SIO_000300: 1.366618e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

FS
type: SiteQuality
SIO_000300: 5.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

QD
type: SiteQuality
SIO_000300: 1.55e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
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variant carriers: 0

GenotypeQuality
all individuals: 278
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variant carriers: 0

GenotypeQuality
all individuals: 2853
bin: 6.75e1
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GenotypeQuality
all individuals: 746
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3851
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7763
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.791e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.397e1

MQRankSum
type: SiteQuality
SIO_000300: 2.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

DP
type: SiteQuality
SIO_000300: 1.346871e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 2.139e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.02e-1

GenotypeQuality
all individuals: 314
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variant carriers: 0

GenotypeQuality
all individuals: 2755
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GenotypeQuality
all individuals: 350
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GenotypeQuality
all individuals: 716
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variant carriers: 0

GenotypeQuality
all individuals: 556
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variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8347
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7627
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.275119861266959e-4
allele num: 39212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7638
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.308141e6

QD
type: SiteQuality
SIO_000300: 1.471e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 5.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.99e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
all individuals: 437
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variant carriers: 0

GenotypeQuality
all individuals: 3691
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GenotypeQuality
all individuals: 553
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GenotypeQuality
all individuals: 806
bin: 3.25e1
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GenotypeQuality
all individuals: 165
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GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7591
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38999
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 533
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3761
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5770
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.311819493637675e-4
allele num: 7623
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8321
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.055e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

DP
type: SiteQuality
SIO_000300: 1.301215e6

QD
type: SiteQuality
SIO_000300: 1.612e1

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3691
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 166
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7591
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3761
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.403557264751833e-4
allele num: 8321
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.692504936024e-5
allele num: 38999
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7623
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 533
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 3.055e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

DP
type: SiteQuality
SIO_000300: 1.301215e6

QD
type: SiteQuality
SIO_000300: 1.612e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

GenotypeQuality
all individuals: 519
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2707
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variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3729
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8247
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7539
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.744896178677369e-4
allele num: 5731
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.281926e6

VQSLOD
type: SiteQuality
SIO_000300: -3.677e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.102e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
all individuals: 394
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7511
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.326787846623325e-4
allele num: 7537
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3701
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38310
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

DP
type: SiteQuality
SIO_000300: 1.270812e6

GenotypeQuality
all individuals: 21335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23738
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5547
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3595
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7367
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.70160745643658e-4
allele num: 7403
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8026
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

FS
type: SiteQuality
SIO_000300: 2.212e0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 1.231209e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.014e0

QD
type: SiteQuality
SIO_000300: 1.308e1

GenotypeQuality
all individuals: 226
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
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variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
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variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37329
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8031
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.350438892640108e-4
allele num: 7405
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3599
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.230016e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.958e-1

FS
type: SiteQuality
SIO_000300: 8.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.28e-1

MQ
type: SiteQuality
SIO_000300: 5.865e1

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
all individuals: 583
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3567
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.711349709885581e-5
allele num: 36882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 507
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

QD
type: SiteQuality
SIO_000300: 2.639e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.313e-1

DP
type: SiteQuality
SIO_000300: 1.21067e6

GenotypeQuality
all individuals: 2306
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3685
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
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variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.371584699453552e-4
allele num: 4575
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6579
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6996
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3173
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.23e-1

FS
type: SiteQuality
SIO_000300: 1.724e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.777e0

DP
type: SiteQuality
SIO_000300: 1.03568e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 2.319e1

GenotypeQuality
all individuals: 654
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 432
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5947
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27127
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6235
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2745
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

MQ
type: SiteQuality
SIO_000300: 4.196e1

VQSLOD
type: SiteQuality
SIO_000300: -6.765e-1

DP
type: SiteQuality
SIO_000300: 9.06799e5

QD
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 2.449e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.026e0

GenotypeQuality
all individuals: 1332
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
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variant carriers: 0

GenotypeQuality
all individuals: 5135
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27127
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5947
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2745
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6235
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

MQ
type: SiteQuality
SIO_000300: 4.196e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.026e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.765e-1

FS
type: SiteQuality
SIO_000300: 2.449e0

DP
type: SiteQuality
SIO_000300: 9.06799e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 487
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4516
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5929
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2689
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5851
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 409
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

FS
type: SiteQuality
SIO_000300: 9.071e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 8.944e5

MQ
type: SiteQuality
SIO_000300: 3.802e1

VQSLOD
type: SiteQuality
SIO_000300: -7.688e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.65e-2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2689
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5851
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 409
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5929
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.071e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

DP
type: SiteQuality
SIO_000300: 8.944e5

QD
type: SiteQuality
SIO_000300: 1.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.65e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.688e-1

MQ
type: SiteQuality
SIO_000300: 3.802e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
all individuals: 429
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5733
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 405
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.06e0

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.64e-1

FS
type: SiteQuality
SIO_000300: 4.578e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.38e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 3.548e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.187e0

DP
type: SiteQuality
SIO_000300: 8.86642e5

GenotypeQuality
all individuals: 3677
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 476
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.95835807307129e-5
allele num: 25263
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3387
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6029
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2561
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 401
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

FS
type: SiteQuality
SIO_000300: 2.412e0

DP
type: SiteQuality
SIO_000300: 8.76341e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.48e-2

MQ
type: SiteQuality
SIO_000300: 5.361e1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -2.631e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.47e0

QD
type: SiteQuality
SIO_000300: 2.58e0

GenotypeQuality
all individuals: 3675
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 426
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5737
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22617
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2299
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 357
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4993
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.887148518588413e-4
allele num: 5299
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.61e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

DP
type: SiteQuality
SIO_000300: 8.42985e5

FS
type: SiteQuality
SIO_000300: 1.583e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
all individuals: 493
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35974
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.346786637977875e-5
allele num: 46011
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4229
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8291
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.291e-1

QD
type: SiteQuality
SIO_000300: 2.984e1

MQRankSum
type: SiteQuality
SIO_000300: 5.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.467e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.88e1

DP
type: SiteQuality
SIO_000300: 1.430098e6

GenotypeQuality
all individuals: 1456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37871
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8997
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4243
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.16314434662225e-5
allele num: 46229
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

DP
type: SiteQuality
SIO_000300: 1.448918e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.974e0

QD
type: SiteQuality
SIO_000300: 1.187e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
all individuals: 514
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46427
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.083089255433945e-4
allele num: 6487
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.066211749653481e-4
allele num: 9379
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.472011e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

VQSLOD
type: SiteQuality
SIO_000300: 9.23e-1

QD
type: SiteQuality
SIO_000300: 1.119e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

FS
type: SiteQuality
SIO_000300: 2.341e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

GenotypeQuality
all individuals: 1005
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1540
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9093
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9537
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.644736842105263e-3
allele num: 608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4334
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.243e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.251e0

MQRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 9.298e0

DP
type: SiteQuality
SIO_000300: 1.513672e6

QD
type: SiteQuality
SIO_000300: 1.338e1

VQSLOD
type: SiteQuality
SIO_000300: -1.531e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 172
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 5.929088106249259e-4
allele num: 8433
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9715
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4417
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.090988435522584e-4
allele num: 9166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47456
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.550555e6

FS
type: SiteQuality
SIO_000300: 2.18e0

VQSLOD
type: SiteQuality
SIO_000300: 3.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.91e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.236e0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7289
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.364904812581294e-4
allele num: 8457
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9199
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4445
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.496e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.27e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 1.559028e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.95e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: -1.703e0

GenotypeQuality
all individuals: 45550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7292
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 173
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8459
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.087074682030656e-4
allele num: 9199
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.203181808629132e-5
allele num: 47583
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4448
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.560792e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.52e-1

FS
type: SiteQuality
SIO_000300: 7.916e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: -1.123e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-2

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.422e1

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7300
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.101502574340654e-5
allele num: 47585
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9787
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

DP
type: SiteQuality
SIO_000300: 1.561187e6

FS
type: SiteQuality
SIO_000300: 2.521e0

MQRankSum
type: SiteQuality
SIO_000300: -1.054e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

QD
type: SiteQuality
SIO_000300: 1.457e1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 7244
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44097
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 276
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9753
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9193
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.471886959081543e-4
allele num: 47558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.067e-1

QD
type: SiteQuality
SIO_000300: 1.816e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

DP
type: SiteQuality
SIO_000300: 1.558596e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.21e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 172
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.176041780002176e-4
allele num: 9191
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47575
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.184693756663902e-4
allele num: 8441
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4452
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.288e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.08e-2

QD
type: SiteQuality
SIO_000300: 1.351e1

VQSLOD
type: SiteQuality
SIO_000300: -2.341e-1

DP
type: SiteQuality
SIO_000300: 1.559448e6

GenotypeQuality
all individuals: 229
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.102076851929706e-5
allele num: 47572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9191
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4451
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 2.771e0

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.533e1

DP
type: SiteQuality
SIO_000300: 1.557738e6

GenotypeQuality
all individuals: 472
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9747
num of homozygotes: 0