19-3000764-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3000764
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3000764
    reference: chr 19
allele count: 1
allele frequency: 3.88078236572493e-5
allele num: 25768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+1587G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2048-43G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1682-43G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+1587G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1682-43G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1049-43G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2051-43G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-3004G>A
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23258
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20781
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10751
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-3000765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3000765
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3000765
    reference: chr 19
allele count: 1
allele frequency: 3.902895948794005e-5
allele num: 25622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-3005C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+1586C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1682-44C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1682-44C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+1586C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1049-44C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2048-44C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2051-44C>T
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6831
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20556
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3056
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/19-3000770-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3000770
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3000769
    reference: chr 19
allele count: 1
allele frequency: 3.990422984836392e-5
allele num: 25060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2051-50delG
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+1580delG
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1682-50delG
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+1580delG
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1049-50delG
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2048-50delG
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-3011delG
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1682-50delG
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7692
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: AC
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

19-3002302-GGTTTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002302
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002297
    reference: chr 19
allele count: 1
allele frequency: 8.523986498005388e-6
allele num: 117316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681+44_1681+48delAAAAC
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681+44_1681+48delAAAAC
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048+44_1048+48delAAAAC
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050+44_2050+48delAAAAC
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047+44_2047+48delAAAAC
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+44_2089+48delAAAAC
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4547_257-4543delAAAAC
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+44_2089+48delAAAAC
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35673
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: GGTTTT
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS

19-3002305-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002305
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002305
    reference: chr 19
allele count: 2
allele frequency: 1.703200313388858e-5
allele num: 117426
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047+46A>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+46A>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+46A>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681+46A>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050+46A>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681+46A>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4545A>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048+46A>G
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

19-3002313-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002313
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002313
    reference: chr 19
allele count: 271
allele frequency: 2.30516663547745e-3
allele num: 117562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4553C>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681+38C>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+38C>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+38C>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048+38C>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050+38C>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047+38C>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681+38C>G
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 25781
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 17195
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

19-3002319-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002319
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002319
    reference: chr 19
allele count: 1
allele frequency: 8.499498529586754e-6
allele num: 117654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4559C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050+32C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681+32C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+32C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+32C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047+32C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681+32C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048+32C>T
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41204
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

19-3002324-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002324
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002324
    reference: chr 19
allele count: 3
allele frequency: 2.547684155103011e-5
allele num: 117754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050+27G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+27G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4564G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+27G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047+27G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681+27G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048+27G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681+27G>A
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

19-3002325-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002325
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002325
    reference: chr 19
allele count: 5
allele frequency: 4.234991191218322e-5
allele num: 118064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4565C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048+26C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681+26C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047+26C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050+26C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681+26C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+26C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+26C>T
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7985
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

19-3002333-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002333
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002333
    reference: chr 19
allele count: 1
allele frequency: 8.442238206193226e-6
allele num: 118452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681+18G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050+18G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047+18G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4573G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+18G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+18G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681+18G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048+18G>A
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27513
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1799
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-3002334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002334
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002334
    reference: chr 19
allele count: 12
allele frequency: 1.012880463223999e-4
allele num: 118474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681+17G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4574G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048+17G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+17G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047+17G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050+17G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681+17G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+17G>A
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8830
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18992
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27574
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-3002335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002335
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002335
    reference: chr 19
allele count: 17
allele frequency: 1.43348623853211e-4
allele num: 118592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+16C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4575C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+16C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681+16C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048+16C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681+16C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047+16C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050+16C>T
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8882
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27670
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43380
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

19-3002339-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002339
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002339
    reference: chr 19
allele count: 2
allele frequency: 1.682283868579984e-5
allele num: 118886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681+12G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681+12G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+12G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4579G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047+12G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048+12G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+12G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050+12G>A
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

19-3002340-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002340
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002340
    reference: chr 19
allele count: 1
allele frequency: 8.4071763657458e-6
allele num: 118946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4580T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+11T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681+11T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+11T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681+11T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047+11T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048+11T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050+11T>C
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8265
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-3002343-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002343
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002343
    reference: chr 19
allele count: 1
allele frequency: 8.393768466290626e-6
allele num: 119136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050+8T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047+8T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089+8T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681+8T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089+8T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4583T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048+8T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681+8T>C
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 9.75e1
  variant carriers: 1
hgvs: c.2047+8T>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

19-3002351-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002351
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002351
    reference: chr 19
allele count: 4
allele frequency: 3.350532734704818e-5
allele num: 119384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4591G>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2047G>C
  hgvsp: ENSP00000262953.5:p.Gly683Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1681G>C
  hgvsp: ENSP00000392427.2:p.Gly561Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2089G>C
  hgvsp: ENSP00000468279.1:p.Val697Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1681G>C
  hgvsp: ENSP00000413107.2:p.Gly561Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2089G>C
  hgvsp: ENSP00000392869.2:p.Val697Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1048G>C
  hgvsp: ENSP00000406523.2:p.Gly350Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2050G>C
  hgvsp: ENSP00000466542.1:p.Gly684Arg
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9163
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly683Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

19-3002352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002352
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002352
    reference: chr 19
allele count: 13
allele frequency: 1.088266809536566e-4
allele num: 119456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1680C>T
  hgvsp: ENST00000443826.3:c.1680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1047C>T
  hgvsp: ENST00000447365.2:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1680C>T
  hgvsp: ENST00000455444.2:c.1680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4592C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2088C>T
  hgvsp: ENST00000591529.1:c.2088C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2088C>T
  hgvsp: ENST00000426948.2:c.2088C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2046C>T
  hgvsp: ENST00000262953.6:c.2046C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2049C>T
  hgvsp: ENST00000590536.1:c.2049C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28291
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
hgvs: c.2046C>T
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

19-3002355-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002355
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002355
    reference: chr 19
allele count: 1
allele frequency: 8.359806052499582e-6
allele num: 119620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1044C>T
  hgvsp: ENST00000447365.2:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1677C>T
  hgvsp: ENST00000455444.2:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2085C>T
  hgvsp: ENST00000591529.1:c.2085C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2046C>T
  hgvsp: ENST00000590536.1:c.2046C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1677C>T
  hgvsp: ENST00000443826.3:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4595C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2085C>T
  hgvsp: ENST00000426948.2:c.2085C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2043C>T
  hgvsp: ENST00000262953.6:c.2043C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8380
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser681Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-3002370-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002370
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002370
    reference: chr 19
allele count: 8
allele frequency: 6.681812107443539e-5
allele num: 119728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1029C>A
  hgvsp: ENST00000447365.2:c.1029C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2028C>A
  hgvsp: ENST00000262953.6:c.2028C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2070C>A
  hgvsp: ENST00000591529.1:c.2070C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1662C>A
  hgvsp: ENST00000443826.3:c.1662C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2070C>A
  hgvsp: ENST00000426948.2:c.2070C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1662C>A
  hgvsp: ENST00000455444.2:c.1662C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4610C>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2031C>A
  hgvsp: ENST00000590536.1:c.2031C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28572
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser676Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-3002375-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002375
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002375
    reference: chr 19
allele count: 1
allele frequency: 8.357151214294072e-6
allele num: 119658
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2026C>G
  hgvsp: ENSP00000466542.1:p.Leu676Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1657C>G
  hgvsp: ENSP00000413107.2:p.Leu553Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1657C>G
  hgvsp: ENSP00000392427.2:p.Leu553Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2023C>G
  hgvsp: ENSP00000262953.5:p.Leu675Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2065C>G
  hgvsp: ENSP00000468279.1:p.Leu689Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2065C>G
  hgvsp: ENSP00000392869.2:p.Leu689Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4615C>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1024C>G
  hgvsp: ENSP00000406523.2:p.Leu342Val
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44561
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu675Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS

19-3002376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002376
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002376
    reference: chr 19
allele count: 1
allele frequency: 8.358268835358821e-6
allele num: 119642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2064G>A
  hgvsp: ENST00000426948.2:c.2064G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1656G>A
  hgvsp: ENST00000455444.2:c.1656G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2064G>A
  hgvsp: ENST00000591529.1:c.2064G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1656G>A
  hgvsp: ENST00000443826.3:c.1656G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2022G>A
  hgvsp: ENST00000262953.6:c.2022G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2025G>A
  hgvsp: ENST00000590536.1:c.2025G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1023G>A
  hgvsp: ENST00000447365.2:c.1023G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4616G>A
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val674Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

19-3002378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002378
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002378
    reference: chr 19
allele count: 4
allele frequency: 3.34487314568595e-5
allele num: 119586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4618G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2020G>A
  hgvsp: ENSP00000262953.5:p.Val674Met
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2062G>A
  hgvsp: ENSP00000392869.2:p.Val688Met
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1654G>A
  hgvsp: ENSP00000413107.2:p.Val552Met
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2023G>A
  hgvsp: ENSP00000466542.1:p.Val675Met
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1654G>A
  hgvsp: ENSP00000392427.2:p.Val552Met
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1021G>A
  hgvsp: ENSP00000406523.2:p.Val341Met
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2062G>A
  hgvsp: ENSP00000468279.1:p.Val688Met
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28537
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8359
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val674Met
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-3002382-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002382
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002382
    reference: chr 19
allele count: 1
allele frequency: 8.365120792344242e-6
allele num: 119544
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2016C>G
  hgvsp: ENSP00000262953.5:p.Ser672Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2019C>G
  hgvsp: ENSP00000466542.1:p.Ser673Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2058C>G
  hgvsp: ENSP00000468279.1:p.Ser686Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1650C>G
  hgvsp: ENSP00000413107.2:p.Ser550Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1650C>G
  hgvsp: ENSP00000392427.2:p.Ser550Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4622C>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1017C>G
  hgvsp: ENSP00000406523.2:p.Ser339Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2058C>G
  hgvsp: ENSP00000392869.2:p.Ser686Arg
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44426
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser672Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-3002383-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002383
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002383
    reference: chr 19
allele count: 8
allele frequency: 6.694336591243807e-5
allele num: 119504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2018G>A
  hgvsp: ENSP00000466542.1:p.Ser673Asn
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4623G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1016G>A
  hgvsp: ENSP00000406523.2:p.Ser339Asn
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2015G>A
  hgvsp: ENSP00000262953.5:p.Ser672Asn
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2057G>A
  hgvsp: ENSP00000468279.1:p.Ser686Asn
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1649G>A
  hgvsp: ENSP00000413107.2:p.Ser550Asn
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2057G>A
  hgvsp: ENSP00000392869.2:p.Ser686Asn
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1649G>A
  hgvsp: ENSP00000392427.2:p.Ser550Asn
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9266
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser672Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP

19-3002387-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002387
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002387
    reference: chr 19
allele count: 1
allele frequency: 8.388135820695209e-6
allele num: 119216
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2011G>A
  hgvsp: ENSP00000262953.5:p.Glu671Lys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1012G>A
  hgvsp: ENSP00000406523.2:p.Glu338Lys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1645G>A
  hgvsp: ENSP00000392427.2:p.Glu549Lys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4627G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2053G>A
  hgvsp: ENSP00000392869.2:p.Glu685Lys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2014G>A
  hgvsp: ENSP00000466542.1:p.Glu672Lys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1645G>A
  hgvsp: ENSP00000413107.2:p.Glu549Lys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2053G>A
  hgvsp: ENSP00000468279.1:p.Glu685Lys
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu671Lys
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS

19-3002388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002388
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002388
    reference: chr 19
allele count: 69
allele frequency: 5.788105024746246e-4
allele num: 119210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1644C>T
  hgvsp: ENST00000443826.3:c.1644C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1644C>T
  hgvsp: ENST00000455444.2:c.1644C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.2010C>T
  hgvsp: ENST00000262953.6:c.2010C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4628C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2013C>T
  hgvsp: ENST00000590536.1:c.2013C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2052C>T
  hgvsp: ENST00000426948.2:c.2052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.1011C>T
  hgvsp: ENST00000447365.2:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2052C>T
  hgvsp: ENST00000591529.1:c.2052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28492
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18821
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9247
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His670His
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

19-3002400-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002400
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002400
    reference: chr 19
allele count: 1
allele frequency: 8.517887563884156e-6
allele num: 117400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.999G>C
  hgvsp: ENSP00000406523.2:p.Gln333His
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1632G>C
  hgvsp: ENSP00000413107.2:p.Gln544His
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2040G>C
  hgvsp: ENSP00000392869.2:p.Gln680His
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.2001G>C
  hgvsp: ENSP00000466542.1:p.Gln667His
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1632G>C
  hgvsp: ENSP00000392427.2:p.Gln544His
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1998G>C
  hgvsp: ENSP00000262953.5:p.Gln666His
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4640G>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2040G>C
  hgvsp: ENSP00000468279.1:p.Gln680His
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln666His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

19-3002412-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002412
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002412
    reference: chr 19
allele count: 5
allele frequency: 4.494139641906954e-5
allele num: 111256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4652G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1986G>A
  hgvsp: ENST00000262953.6:c.1986G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1620G>A
  hgvsp: ENST00000455444.2:c.1620G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1989G>A
  hgvsp: ENST00000590536.1:c.1989G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2028G>A
  hgvsp: ENST00000591529.1:c.2028G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.987G>A
  hgvsp: ENST00000447365.2:c.987G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2028G>A
  hgvsp: ENST00000426948.2:c.2028G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1620G>A
  hgvsp: ENST00000443826.3:c.1620G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14475
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35551
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Pro662Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

19-3002413-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002413
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002413
    reference: chr 19
allele count: 2
allele frequency: 1.80446786242737e-5
allele num: 110836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1619C>T
  hgvsp: ENSP00000413107.2:p.Pro540Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.986C>T
  hgvsp: ENSP00000406523.2:p.Pro329Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2027C>T
  hgvsp: ENSP00000392869.2:p.Pro676Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1619C>T
  hgvsp: ENSP00000392427.2:p.Pro540Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2027C>T
  hgvsp: ENSP00000468279.1:p.Pro676Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4653C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1988C>T
  hgvsp: ENSP00000466542.1:p.Pro663Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1985C>T
  hgvsp: ENSP00000262953.5:p.Pro662Leu
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro662Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

19-3002418-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002418
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002418
    reference: chr 19
allele count: 1
allele frequency: 9.330969487729775e-6
allele num: 107170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1614C>A
  hgvsp: ENST00000443826.3:c.1614C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1983C>A
  hgvsp: ENST00000590536.1:c.1983C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4658C>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.981C>A
  hgvsp: ENST00000447365.2:c.981C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2022C>A
  hgvsp: ENST00000591529.1:c.2022C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2022C>A
  hgvsp: ENST00000426948.2:c.2022C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1614C>A
  hgvsp: ENST00000455444.2:c.1614C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1980C>A
  hgvsp: ENST00000262953.6:c.1980C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14365
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31501
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg660Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

19-3002419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002419
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002419
    reference: chr 19
allele count: 4
allele frequency: 3.768039489053845e-5
allele num: 106156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1613G>A
  hgvsp: ENSP00000392427.2:p.Arg538His
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4659G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2021G>A
  hgvsp: ENSP00000392869.2:p.Arg674His
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1979G>A
  hgvsp: ENSP00000262953.5:p.Arg660His
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1982G>A
  hgvsp: ENSP00000466542.1:p.Arg661His
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2021G>A
  hgvsp: ENSP00000468279.1:p.Arg674His
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.980G>A
  hgvsp: ENSP00000406523.2:p.Arg327His
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1613G>A
  hgvsp: ENSP00000413107.2:p.Arg538His
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14185
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20631
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13350
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg660His
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

19-3002420-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002420
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002420
    reference: chr 19
allele count: 8
allele frequency: 7.638981723736226e-5
allele num: 104726
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1978C>T
  hgvsp: ENSP00000262953.5:p.Arg660Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4660C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2020C>T
  hgvsp: ENSP00000468279.1:p.Arg674Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2020C>T
  hgvsp: ENSP00000392869.2:p.Arg674Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1981C>T
  hgvsp: ENSP00000466542.1:p.Arg661Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.979C>T
  hgvsp: ENSP00000406523.2:p.Arg327Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1612C>T
  hgvsp: ENSP00000413107.2:p.Arg538Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1612C>T
  hgvsp: ENSP00000392427.2:p.Arg538Cys
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13950
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9849
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4903
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 9.75e1
  variant carriers: 8
hgvs: p.Arg660Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

19-3002423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002423
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002423
    reference: chr 19
allele count: 1
allele frequency: 9.666505558240696e-6
allele num: 103450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2017G>A
  hgvsp: ENSP00000392869.2:p.Val673Ile
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.976G>A
  hgvsp: ENSP00000406523.2:p.Val326Ile
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1609G>A
  hgvsp: ENSP00000392427.2:p.Val537Ile
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1975G>A
  hgvsp: ENSP00000262953.5:p.Val659Ile
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2017G>A
  hgvsp: ENSP00000468279.1:p.Val673Ile
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1609G>A
  hgvsp: ENSP00000413107.2:p.Val537Ile
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4663G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1978G>A
  hgvsp: ENSP00000466542.1:p.Val660Ile
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18393
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val659Ile
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-3002424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002424
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002424
    reference: chr 19
allele count: 18
allele frequency: 1.741519766249347e-4
allele num: 103358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.975C>T
  hgvsp: ENST00000447365.2:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1977C>T
  hgvsp: ENST00000590536.1:c.1977C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2016C>T
  hgvsp: ENST00000426948.2:c.2016C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1974C>T
  hgvsp: ENST00000262953.6:c.1974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1608C>T
  hgvsp: ENST00000455444.2:c.1608C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1608C>T
  hgvsp: ENST00000443826.3:c.1608C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2016C>T
  hgvsp: ENST00000591529.1:c.2016C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4664C>T
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14007
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18392
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10641
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16653
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 1
hgvs: p.His658His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-3002438-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002438
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002438
    reference: chr 19
allele count: 1
allele frequency: 1.123166430801716e-5
allele num: 89034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2002G>A
  hgvsp: ENSP00000392869.2:p.Val668Met
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1963G>A
  hgvsp: ENSP00000466542.1:p.Val655Met
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1594G>A
  hgvsp: ENSP00000413107.2:p.Val532Met
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1960G>A
  hgvsp: ENSP00000262953.5:p.Val654Met
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1594G>A
  hgvsp: ENSP00000392427.2:p.Val532Met
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2002G>A
  hgvsp: ENSP00000468279.1:p.Val668Met
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4678G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.961G>A
  hgvsp: ENSP00000406523.2:p.Val321Met
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10071
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val654Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

19-3002439-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002439
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002439
    reference: chr 19
allele count: 5
allele frequency: 5.629743058526809e-5
allele num: 88814
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1959C>T
  hgvsp: ENST00000262953.6:c.1959C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.960C>T
  hgvsp: ENST00000447365.2:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1593C>T
  hgvsp: ENST00000455444.2:c.1593C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1962C>T
  hgvsp: ENST00000590536.1:c.1962C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1593C>T
  hgvsp: ENST00000443826.3:c.1593C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4679C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.2001C>T
  hgvsp: ENST00000426948.2:c.2001C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.2001C>T
  hgvsp: ENST00000591529.1:c.2001C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10186
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn653Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-3002444-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002444
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002444
    reference: chr 19
allele count: 13
allele frequency: 1.589864005478916e-4
allele num: 81768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1588A>G
  hgvsp: ENSP00000413107.2:p.Ser530Gly
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1996A>G
  hgvsp: ENSP00000468279.1:p.Ser666Gly
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1957A>G
  hgvsp: ENSP00000466542.1:p.Ser653Gly
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1588A>G
  hgvsp: ENSP00000392427.2:p.Ser530Gly
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4684A>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1996A>G
  hgvsp: ENSP00000392869.2:p.Ser666Gly
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.955A>G
  hgvsp: ENSP00000406523.2:p.Ser319Gly
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1954A>G
  hgvsp: ENSP00000262953.5:p.Ser652Gly
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7789
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 17583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2574
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser652Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

19-3002448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002448
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002448
    reference: chr 19
allele count: 2
allele frequency: 2.656677559044659e-5
allele num: 75282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1584G>A
  hgvsp: ENST00000443826.3:c.1584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.951G>A
  hgvsp: ENST00000447365.2:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1992G>A
  hgvsp: ENST00000426948.2:c.1992G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1584G>A
  hgvsp: ENST00000455444.2:c.1584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4688G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1992G>A
  hgvsp: ENST00000591529.1:c.1992G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1953G>A
  hgvsp: ENST00000590536.1:c.1953G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1950G>A
  hgvsp: ENST00000262953.6:c.1950G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu650Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

19-3002457-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002457
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002457
    reference: chr 19
allele count: 1
allele frequency: 1.594438598169585e-5
allele num: 62718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1944C>T
  hgvsp: ENST00000590536.1:c.1944C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1983C>T
  hgvsp: ENST00000591529.1:c.1983C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4697C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1575C>T
  hgvsp: ENST00000443826.3:c.1575C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.942C>T
  hgvsp: ENST00000447365.2:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1983C>T
  hgvsp: ENST00000426948.2:c.1983C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1575C>T
  hgvsp: ENST00000455444.2:c.1575C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1941C>T
  hgvsp: ENST00000262953.6:c.1941C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22769
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32411
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val647Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

19-3002460-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002460
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002460
    reference: chr 19
allele count: 1
allele frequency: 1.596882884609243e-5
allele num: 62622
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1941G>A
  hgvsp: ENST00000590536.1:c.1941G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1572G>A
  hgvsp: ENST00000455444.2:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1980G>A
  hgvsp: ENST00000591529.1:c.1980G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.939G>A
  hgvsp: ENST00000447365.2:c.939G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1938G>A
  hgvsp: ENST00000262953.6:c.1938G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1980G>A
  hgvsp: ENST00000426948.2:c.1980G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1572G>A
  hgvsp: ENST00000443826.3:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4700G>A
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17296
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7144
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala646Ala
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/19-3002463-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002463
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002463
    reference: chr 19
allele count: 3
allele frequency: 4.932101404004866e-5
allele num: 60826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4703G>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1977G>T
  hgvsp: ENST00000426948.2:c.1977G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1935G>T
  hgvsp: ENST00000262953.6:c.1935G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1569G>T
  hgvsp: ENST00000455444.2:c.1569G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1977G>T
  hgvsp: ENST00000591529.1:c.1977G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.936G>T
  hgvsp: ENST00000447365.2:c.936G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1569G>T
  hgvsp: ENST00000443826.3:c.1569G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1938G>T
  hgvsp: ENST00000590536.1:c.1938G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6254
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16748
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24553
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu645Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

19-3002473-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002473
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002473
    reference: chr 19
allele count: 2
allele frequency: 3.746440881162895e-5
allele num: 53384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1559A>G
  hgvsp: ENSP00000392427.2:p.Gln520Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1559A>G
  hgvsp: ENSP00000413107.2:p.Gln520Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1928A>G
  hgvsp: ENSP00000466542.1:p.Gln643Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1967A>G
  hgvsp: ENSP00000392869.2:p.Gln656Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1925A>G
  hgvsp: ENSP00000262953.5:p.Gln642Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1967A>G
  hgvsp: ENSP00000468279.1:p.Gln656Arg
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4713A>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.926A>G
  hgvsp: ENSP00000406523.2:p.Gln309Arg
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15258
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6169
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln642Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

19-3002479-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002479
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002479
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 48210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4719C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1961C>T
  hgvsp: ENSP00000392869.2:p.Pro654Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1961C>T
  hgvsp: ENSP00000468279.1:p.Pro654Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1553C>T
  hgvsp: ENSP00000413107.2:p.Pro518Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1922C>T
  hgvsp: ENSP00000466542.1:p.Pro641Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1919C>T
  hgvsp: ENSP00000262953.5:p.Pro640Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.920C>T
  hgvsp: ENSP00000406523.2:p.Pro307Leu
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1553C>T
  hgvsp: ENSP00000392427.2:p.Pro518Leu
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 23615
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31867
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro640Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

19-3002487-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002487
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002487
    reference: chr 19
allele count: 1
allele frequency: 2.489296027083541e-5
allele num: 40172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1545C>T
  hgvsp: ENST00000443826.3:c.1545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1914C>T
  hgvsp: ENST00000590536.1:c.1914C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1953C>T
  hgvsp: ENST00000591529.1:c.1953C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1953C>T
  hgvsp: ENST00000426948.2:c.1953C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1545C>T
  hgvsp: ENST00000455444.2:c.1545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.912C>T
  hgvsp: ENST00000447365.2:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4727C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1911C>T
  hgvsp: ENST00000262953.6:c.1911C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5085
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly637Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum

19-3002492-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002492
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002492
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 35928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1909C>T
  hgvsp: ENST00000590536.1:c.1909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1948C>T
  hgvsp: ENST00000591529.1:c.1948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1906C>T
  hgvsp: ENST00000262953.6:c.1906C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1540C>T
  hgvsp: ENST00000443826.3:c.1540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.907C>T
  hgvsp: ENST00000447365.2:c.907C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4732C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1540C>T
  hgvsp: ENST00000455444.2:c.1540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1948C>T
  hgvsp: ENST00000426948.2:c.1948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20380
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20430
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu636Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-3002513-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002513
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002513
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 23872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1939-12C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1897-12C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4753C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1939-12C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1531-12C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.898-12C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1531-12C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1900-12C>T
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11876
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-3002532-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002532
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002532
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 19346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.898-31G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1939-31G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1531-31G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1900-31G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1939-31G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1531-31G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1897-31G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4772G>A
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5611
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2981
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

19-3002533-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002533
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002533
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 19248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.898-32C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1939-32C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4773C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1900-32C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1531-32C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1531-32C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1897-32C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1939-32C>T
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6238
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28562
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

19-3002541-CTTTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002541
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002536
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 18842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1939-45_1939-41delACAAA
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.898-45_898-41delACAAA
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1900-45_1900-41delACAAA
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4786_257-4782delACAAA
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1531-45_1531-41delACAAA
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1897-45_1897-41delACAAA
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1531-45_1531-41delACAAA
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1939-45_1939-41delACAAA
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32221
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24835
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: CTTTGT
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

19-3002550-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3002550
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3002550
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 18576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1939-49C>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1531-49C>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1531-49C>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1897-49C>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1939-49C>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.898-49C>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-4790C>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1900-49C>A
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31801
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11441
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum

19-3005386-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005386
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005386
    reference: chr 19
allele count: 1
allele frequency: 8.778706369829343e-6
allele num: 113912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1938+49C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1530+49C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1899+49C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1938+49C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7626C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1530+49C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.897+49C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1896+49C>T
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10898
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5547
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5365
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3685
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-3005389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005389
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005389
    reference: chr 19
allele count: 1
allele frequency: 8.762552356250328e-6
allele num: 114122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1899+46C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1530+46C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1896+46C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1938+46C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1938+46C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1530+46C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.897+46C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7629C>T
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18858
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

19-3005399-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005399
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005399
    reference: chr 19
allele count: 1
allele frequency: 8.701402666109778e-6
allele num: 114924
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1938+36T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.897+36T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1530+36T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7639T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1938+36T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1896+36T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1530+36T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1899+36T>C
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26790
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3072
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-3005411-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005411
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005411
    reference: chr 19
allele count: 807
allele frequency: 6.940621989816981e-3
allele num: 116272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.897+24G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1938+24G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1530+24G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7651G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1896+24G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1899+24G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1938+24G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1530+24G>A
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30721
  bin: 2.25e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 1.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 1.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 3.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 14269
  bin: 2.75e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 5
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-3005414-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005414
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005414
    reference: chr 19
allele count: 1
allele frequency: 8.573388203017833e-6
allele num: 116640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.897+21G>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1899+21G>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1896+21G>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1938+21G>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7654G>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1530+21G>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1938+21G>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1530+21G>C
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/19-3005424-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005424
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005424
    reference: chr 19
allele count: 2
allele frequency: 1.698629206230572e-5
allele num: 117742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1899+11G>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1938+11G>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1938+11G>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1896+11G>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1530+11G>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.897+11G>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1530+11G>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7664G>T
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31882
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

19-3005425-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005425
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005425
    reference: chr 19
allele count: 694
allele frequency: 5.888541949497692e-3
allele num: 117856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1938+10G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1938+10G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1530+10G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7665G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1896+10G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1899+10G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.897+10G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1530+10G>A
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16035
  bin: 2.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 31574
  bin: 2.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 3.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 9.75e1
  variant carriers: 687
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 3
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

19-3005426-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005426
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005426
    reference: chr 19
allele count: 2
allele frequency: 1.694714186452455e-5
allele num: 118014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1530+9C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1938+9C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1896+9C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7666C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1530+9C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.897+9C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1938+9C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1899+9C>T
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-3005429-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005429
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005430
    reference: chr 19
allele count: 2
allele frequency: 1.690674240887266e-5
allele num: 118296
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1899+5dupT
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1938+5dupT
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1938+5dupT
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1530+5dupT
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1896+5dupT
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1530+5dupT
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.897+5dupT
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7670dupT
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1896+5dupT
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ

19-3005429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005429
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005429
    reference: chr 19
allele count: 1
allele frequency: 8.45337120443633e-6
allele num: 118296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1938+6G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7669G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1938+6G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1896+6G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1899+6G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1530+6G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1530+6G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.897+6G>A
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1896+6G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

19-3005467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005467
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005467
    reference: chr 19
allele count: 1
allele frequency: 8.412551526878102e-6
allele num: 118870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1906C>T
  hgvsp: ENSP00000392869.2:p.Arg636Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1498C>T
  hgvsp: ENSP00000413107.2:p.Arg500Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7707C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.865C>T
  hgvsp: ENSP00000406523.2:p.Arg289Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1906C>T
  hgvsp: ENSP00000468279.1:p.Arg636Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465292
  ensembl transcript: ENST00000589364
  gene symbol: TLE2
  hgvsc: ENST00000589364.1:c.810C>T
  hgvsp: ENSP00000465292.1:p.Arg271Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1498C>T
  hgvsp: ENSP00000392427.2:p.Arg500Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1867C>T
  hgvsp: ENSP00000466542.1:p.Arg623Cys
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1864C>T
  hgvsp: ENSP00000262953.5:p.Arg622Cys
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37593
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg622Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

19-3005468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005468
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005468
    reference: chr 19
allele count: 1
allele frequency: 8.410004541402452e-6
allele num: 118906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7708C>T
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1863C>T
  hgvsp: ENST00000262953.6:c.1863C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1497C>T
  hgvsp: ENST00000443826.3:c.1497C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1905C>T
  hgvsp: ENST00000426948.2:c.1905C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465292
  ensembl transcript: ENST00000589364
  gene symbol: TLE2
  hgvsc: ENST00000589364.1:c.809C>T
  hgvsp: ENST00000589364.1:c.809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1866C>T
  hgvsp: ENST00000590536.1:c.1866C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1497C>T
  hgvsp: ENST00000455444.2:c.1497C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1905C>T
  hgvsp: ENST00000591529.1:c.1905C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.864C>T
  hgvsp: ENST00000447365.2:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37256
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly621Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

19-3005469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005469
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005469
    reference: chr 19
allele count: 2
allele frequency: 1.68251030537562e-5
allele num: 118870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1904G>A
  hgvsp: ENSP00000468279.1:p.Gly635Asp
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1904G>A
  hgvsp: ENSP00000392869.2:p.Gly635Asp
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1865G>A
  hgvsp: ENSP00000466542.1:p.Gly622Asp
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1496G>A
  hgvsp: ENSP00000392427.2:p.Gly499Asp
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465292
  ensembl transcript: ENST00000589364
  gene symbol: TLE2
  hgvsc: ENST00000589364.1:c.808G>A
  hgvsp: ENSP00000465292.1:p.Gly270Asp
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7709G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.863G>A
  hgvsp: ENSP00000406523.2:p.Gly288Asp
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1496G>A
  hgvsp: ENSP00000413107.2:p.Gly499Asp
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1862G>A
  hgvsp: ENSP00000262953.5:p.Gly621Asp
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Gly621Asp
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

19-3005474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005474
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005474
    reference: chr 19
allele count: 3024
allele frequency: 2.543698793761881e-2
allele num: 118882
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1899G>A
  hgvsp: ENST00000426948.2:c.1899G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7714G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1491G>A
  hgvsp: ENST00000455444.2:c.1491G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1860G>A
  hgvsp: ENST00000590536.1:c.1860G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1899G>A
  hgvsp: ENST00000591529.1:c.1899G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1857G>A
  hgvsp: ENST00000262953.6:c.1857G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465292
  ensembl transcript: ENST00000589364
  gene symbol: TLE2
  hgvsc: ENST00000589364.1:c.803G>A
  hgvsp: ENST00000589364.1:c.803G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.858G>A
  hgvsp: ENST00000447365.2:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1491G>A
  hgvsp: ENST00000443826.3:c.1491G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 1.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 3.25e1
  variant carriers: 487
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27863
  bin: 2.25e1
  variant carriers: 363
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 1.75e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 3.75e1
  variant carriers: 412
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 17885
  bin: 2.75e1
  variant carriers: 495
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.75e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.25e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 131
genotype quality: GenotypeQuality
  all individuals: 35446
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 4.25e1
  variant carriers: 2
hgvs: p.Arg619Arg
num of homozygotes: 50
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

19-3005478-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005478
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005478
    reference: chr 19
allele count: 1
allele frequency: 8.415524960447032e-6
allele num: 118828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7718T>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1487T>C
  hgvsp: ENSP00000392427.2:p.Leu496Pro
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1895T>C
  hgvsp: ENSP00000468279.1:p.Leu632Pro
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465292
  ensembl transcript: ENST00000589364
  gene symbol: TLE2
  hgvsc: ENST00000589364.1:c.799T>C
  hgvsp: ENSP00000465292.1:p.Leu267Pro
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1895T>C
  hgvsp: ENSP00000392869.2:p.Leu632Pro
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1853T>C
  hgvsp: ENSP00000262953.5:p.Leu618Pro
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1487T>C
  hgvsp: ENSP00000413107.2:p.Leu496Pro
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.854T>C
  hgvsp: ENSP00000406523.2:p.Leu285Pro
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1856T>C
  hgvsp: ENSP00000466542.1:p.Leu619Pro
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18550
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu618Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

19-3005479-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005479
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005479
    reference: chr 19
allele count: 1
allele frequency: 8.413542437908056e-6
allele num: 118856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1486C>G
  hgvsp: ENSP00000413107.2:p.Leu496Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1894C>G
  hgvsp: ENSP00000468279.1:p.Leu632Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465292
  ensembl transcript: ENST00000589364
  gene symbol: TLE2
  hgvsc: ENST00000589364.1:c.798C>G
  hgvsp: ENSP00000465292.1:p.Leu267Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1855C>G
  hgvsp: ENSP00000466542.1:p.Leu619Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7719C>G
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1894C>G
  hgvsp: ENSP00000392869.2:p.Leu632Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.853C>G
  hgvsp: ENSP00000406523.2:p.Leu285Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1852C>G
  hgvsp: ENSP00000262953.5:p.Leu618Val
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1486C>G
  hgvsp: ENSP00000392427.2:p.Leu496Val
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37389
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu618Val
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

19-3005487-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005487
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005487
    reference: chr 19
allele count: 1
allele frequency: 8.422329279385507e-6
allele num: 118732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1886G>C
  hgvsp: ENSP00000392869.2:p.Cys629Ser
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7727G>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1886G>C
  hgvsp: ENSP00000468279.1:p.Cys629Ser
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.845G>C
  hgvsp: ENSP00000406523.2:p.Cys282Ser
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1478G>C
  hgvsp: ENSP00000413107.2:p.Cys493Ser
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1847G>C
  hgvsp: ENSP00000466542.1:p.Cys616Ser
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465292
  ensembl transcript: ENST00000589364
  gene symbol: TLE2
  hgvsc: ENST00000589364.1:c.790G>C
  hgvsp: ENSP00000465292.1:p.Cys264Ser
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1478G>C
  hgvsp: ENSP00000392427.2:p.Cys493Ser
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1844G>C
  hgvsp: ENSP00000262953.5:p.Cys615Ser
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys615Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

19-3005492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005492
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005492
    reference: chr 19
allele count: 1
allele frequency: 8.429002511842749e-6
allele num: 118638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1473G>A
  hgvsp: ENST00000443826.3:c.1473G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465292
  ensembl transcript: ENST00000589364
  gene symbol: TLE2
  hgvsc: ENST00000589364.1:c.785G>A
  hgvsp: ENST00000589364.1:c.785G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1473G>A
  hgvsp: ENST00000455444.2:c.1473G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1881G>A
  hgvsp: ENST00000591529.1:c.1881G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1881G>A
  hgvsp: ENST00000426948.2:c.1881G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1842G>A
  hgvsp: ENST00000590536.1:c.1842G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1839G>A
  hgvsp: ENST00000262953.6:c.1839G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7732G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.840G>A
  hgvsp: ENST00000447365.2:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val613Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

19-3005495-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005495
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005495
    reference: chr 19
allele count: 1
allele frequency: 8.432271991365354e-6
allele num: 118592
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1839G>C
  hgvsp: ENST00000590536.1:c.1839G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1878G>C
  hgvsp: ENST00000426948.2:c.1878G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1878G>C
  hgvsp: ENST00000591529.1:c.1878G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.837G>C
  hgvsp: ENST00000447365.2:c.837G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1470G>C
  hgvsp: ENST00000443826.3:c.1470G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1470G>C
  hgvsp: ENST00000455444.2:c.1470G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1836G>C
  hgvsp: ENST00000262953.6:c.1836G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7735G>C
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465292
  ensembl transcript: ENST00000589364
  gene symbol: TLE2
  hgvsc: ENST00000589364.1:c.782G>C
  hgvsp: ENST00000589364.1:c.782G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18162
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr612Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

19-3005498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005498
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005498
    reference: chr 19
allele count: 1
allele frequency: 8.43198758811427e-6
allele num: 118596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.834C>T
  hgvsp: ENST00000447365.2:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1836C>T
  hgvsp: ENST00000590536.1:c.1836C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1833C>T
  hgvsp: ENST00000262953.6:c.1833C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1875C>T
  hgvsp: ENST00000426948.2:c.1875C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1467C>T
  hgvsp: ENST00000455444.2:c.1467C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1875C>T
  hgvsp: ENST00000591529.1:c.1875C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465292
  ensembl transcript: ENST00000589364
  gene symbol: TLE2
  hgvsc: ENST00000589364.1:c.779C>T
  hgvsp: ENST00000589364.1:c.779C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1467C>T
  hgvsp: ENST00000443826.3:c.1467C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7738C>T
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18099
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn611Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

19-3005504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3005504
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 3005504
    reference: chr 19
allele count: 1
allele frequency: 8.444234276835777e-6
allele num: 118424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392869
  ensembl transcript: ENST00000426948
  gene symbol: TLE2
  hgvsc: ENST00000426948.2:c.1869G>A
  hgvsp: ENST00000426948.2:c.1869G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465519
  ensembl transcript: ENST00000586422
  gene symbol: TLE2
  hgvsc: ENST00000586422.1:c.257-7744G>A
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000406523
  ensembl transcript: ENST00000447365
  gene symbol: TLE2
  hgvsc: ENST00000447365.2:c.828G>A
  hgvsp: ENST00000447365.2:c.828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000468279
  ensembl transcript: ENST00000591529
  gene symbol: TLE2
  hgvsc: ENST00000591529.1:c.1869G>A
  hgvsp: ENST00000591529.1:c.1869G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000392427
  ensembl transcript: ENST00000443826
  gene symbol: TLE2
  hgvsc: ENST00000443826.3:c.1461G>A
  hgvsp: ENST00000443826.3:c.1461G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000413107
  ensembl transcript: ENST00000455444
  gene symbol: TLE2
  hgvsc: ENST00000455444.2:c.1461G>A
  hgvsp: ENST00000455444.2:c.1461G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000466542
  ensembl transcript: ENST00000590536
  gene symbol: TLE2
  hgvsc: ENST00000590536.1:c.1830G>A
  hgvsp: ENST00000590536.1:c.1830G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000262953
  ensembl transcript: ENST00000262953
  gene symbol: TLE2
  hgvsc: ENST00000262953.6:c.1827G>A
  hgvsp: ENST00000262953.6:c.1827G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065717
  ensembl protein: ENSP00000465292
  ensembl transcript: ENST00000589364
  gene symbol: TLE2
  hgvsc: ENST00000589364.1:c.773G>A
  hgvsp: ENST00000589364.1:c.773G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11838
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu609Leu
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 6392
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3030
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 404
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6806
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 4.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.552795031055901e-3
allele num: 644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.95687e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.67e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 2.139e0

QD
type: SiteQuality
SIO_000300: 1.233e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 602
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1217
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6868
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.054123711340206e-5
allele num: 12416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.46e-2

DP
type: SiteQuality
SIO_000300: 4.94853e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -2.484e0

GenotypeQuality
all individuals: 4447
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9035
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7012
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19321
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.264462809917356e-5
allele num: 12100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.75e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

DP
type: SiteQuality
SIO_000300: 4.95074e5

QD
type: SiteQuality
SIO_000300: 1.488e1

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 6.107e1

GenotypeQuality
all individuals: 795
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1959
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.712319219376198e-5
allele num: 11478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.331e0

QD
type: SiteQuality
SIO_000300: 1.157e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.267e0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 4.758e1

DP
type: SiteQuality
SIO_000300: 1.489361e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7722
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15578
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.337540906965872e-4
allele num: 8556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

MQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 1.49308e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.722e1

FS
type: SiteQuality
SIO_000300: 3.965e0

VQSLOD
type: SiteQuality
SIO_000300: -5.06e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 39785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7690
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 669
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 199
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 889
bin: 9.75e1
variant carriers: 265

GenotypeQuality
all individuals: 1502
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.220256253813301e-3
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.966213862765587e-4
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 244
allele frequency: 3.74635344695225e-3
allele num: 65130
num of homozygotes: 1

African
type: Population
allele count: 7
allele frequency: 7.504288164665523e-4
allele num: 9328
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.918649270913277e-4
allele num: 15636
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.1441647597254e-3
allele num: 874
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.58e0

DP
type: SiteQuality
SIO_000300: 1.508482e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeQuality
all individuals: 1697
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7803
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.386511687316388e-5
allele num: 15658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.263e0

DP
type: SiteQuality
SIO_000300: 1.516259e6

QD
type: SiteQuality
SIO_000300: 4.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.766e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.036e0

GenotypeQuality
all individuals: 774
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41383
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1008
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.277139208173691e-4
allele num: 15660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.286e0

VQSLOD
type: SiteQuality
SIO_000300: -1.137e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

DP
type: SiteQuality
SIO_000300: 1.525956e6

FS
type: SiteQuality
SIO_000300: 5.169e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

QD
type: SiteQuality
SIO_000300: 8.289999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.85e-1

GenotypeQuality
all individuals: 699
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 7.5e0
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GenotypeQuality
all individuals: 1656
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 199
bin: 9.25e1
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GenotypeQuality
all individuals: 212
bin: 8.75e1
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GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42235
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.118827632625589e-5
allele num: 65372
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.532584e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.03e-1

QD
type: SiteQuality
SIO_000300: 1.149e1

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.42e-1

FS
type: SiteQuality
SIO_000300: 5.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.93e-1

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
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variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 1586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.549456e6

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

QD
type: SiteQuality
SIO_000300: 1.098e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
all individuals: 208
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
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variant carriers: 0

GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 43104
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variant carriers: 0

GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.055743243243243e-4
allele num: 9472
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.474635163307853e-4
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.067952277789644e-4
allele num: 65546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.708e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 1.324e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.551603e6

GenotypeQuality
all individuals: 216
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1804
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variant carriers: 0

GenotypeQuality
all individuals: 406
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variant carriers: 0

GenotypeQuality
all individuals: 467
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variant carriers: 0

GenotypeQuality
all individuals: 1332
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variant carriers: 0

GenotypeQuality
all individuals: 630
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variant carriers: 17

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 8148
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variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.525785779676533e-4
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.054852320675106e-4
allele num: 9480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.134146341463415e-4
allele num: 65600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15974
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 1.555139e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-2

QD
type: SiteQuality
SIO_000300: 1.119e1

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
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variant carriers: 0

GenotypeQuality
all individuals: 742
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 384
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GenotypeQuality
all individuals: 8240
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variant carriers: 0

GenotypeQuality
all individuals: 43800
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variant carriers: 0

GenotypeQuality
all individuals: 1647
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GenotypeQuality
all individuals: 1848
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variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.241156758098548e-4
allele num: 16114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.911e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.775e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 1.148e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.33e-1

FS
type: SiteQuality
SIO_000300: 3.033e0

DP
type: SiteQuality
SIO_000300: 1.562437e6

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 104
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GenotypeQuality
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GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 1653
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GenotypeQuality
all individuals: 350
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GenotypeQuality
all individuals: 250
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GenotypeQuality
all individuals: 44092
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GenotypeQuality
all individuals: 1144
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variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520866285436184e-5
allele num: 65752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.275e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.94e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.36e-1

DP
type: SiteQuality
SIO_000300: 1.564411e6

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 9.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.391e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
all individuals: 44283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 311
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 8296
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1058
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GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 225
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
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variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.181233774261343e-5
allele num: 16178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 1.092e0

QD
type: SiteQuality
SIO_000300: 1.454e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.142e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 1.568387e6

GenotypeQuality
all individuals: 200
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
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GenotypeQuality
all individuals: 935
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GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 235
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GenotypeQuality
all individuals: 240
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 645
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GenotypeQuality
all individuals: 1725
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 1907
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.068513517613861e-5
allele num: 65914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

FS
type: SiteQuality
SIO_000300: 2.213e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 9.96e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.43e-1

DP
type: SiteQuality
SIO_000300: 1.576448e6

GenotypeQuality
all individuals: 1735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 44534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
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variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
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GenotypeQuality
all individuals: 912
bin: 2.25e1
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GenotypeQuality
all individuals: 654
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 245
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GenotypeQuality
all individuals: 1912
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GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.078569943878611e-4
allele num: 9622
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.735809755250825e-4
allele num: 11522
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 9
allele frequency: 1.364794370981439e-4
allele num: 65944
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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SIO_000300: 3.99e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.514646632940535e-5
allele num: 66022
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -1.11e0

VQSLOD
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QD
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BaseQRankSum
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DP
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FS
type: SiteQuality
SIO_000300: 8.28e-1

MQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.210507202517855e-4
allele num: 66088
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.925e1

FS
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514187941007238e-5
allele num: 66042
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.617e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.67e-1

DP
type: SiteQuality
SIO_000300: 1.583707e6

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 2.119e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-5
allele num: 66040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 2.682e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.58359e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.4e-2

QD
type: SiteQuality
SIO_000300: 1.096e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.05913717886573e-5
allele num: 66016
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.582429e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5148760831364e-5
allele num: 66012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 3.485e0

MQ
type: SiteQuality
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BaseQRankSum
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DP
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QD
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VQSLOD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 9.310986964618249e-4
allele num: 8592
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Latino
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African
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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QD
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VQSLOD
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FS
type: SiteQuality
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65836
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South Asian
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Latino
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MQ
type: SiteQuality
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 9.75e1
variant carriers: 69

GenotypeQuality
all individuals: 200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44142
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 7
allele frequency: 6.114605171208945e-4
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.670869155755385e-4
allele num: 65834
num of homozygotes: 0

African
type: Population
allele count: 50
allele frequency: 5.183495749533485e-3
allele num: 9646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

VQSLOD
type: SiteQuality
SIO_000300: 5.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.5786e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 3048
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8008
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1771
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540642139643804e-5
allele num: 64908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

QD
type: SiteQuality
SIO_000300: 1.065e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.195e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 4.19e-1

FS
type: SiteQuality
SIO_000300: 6.384e0

DP
type: SiteQuality
SIO_000300: 1.546004e6

GenotypeQuality
all individuals: 436
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8942
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.721170395869191e-4
allele num: 5810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.481931615621455e-5
allele num: 61710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8048
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.427216e6

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.336e1

FS
type: SiteQuality
SIO_000300: 3.242e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35335
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variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6203
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variant carriers: 0

GenotypeQuality
all individuals: 1363
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variant carriers: 0

GenotypeQuality
all individuals: 422
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variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.252032520325203e-5
allele num: 61500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15298
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0368e1

QD
type: SiteQuality
SIO_000300: 1.264e1

VQSLOD
type: SiteQuality
SIO_000300: 6.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 1.416548e6

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.25e-1

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
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variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
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variant carriers: 0

GenotypeQuality
all individuals: 398
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variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12483
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5525
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.677908654652841e-5
allele num: 59598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.52e0

QD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: -1.379e2

FS
type: SiteQuality
SIO_000300: 1.71045e2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.628e0

DP
type: SiteQuality
SIO_000300: 1.340973e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.013e0

GenotypeQuality
all individuals: 145
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 583
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1469
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.074939946543966e-5
allele num: 59114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7690
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.774149844194554e-5
allele num: 14762
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.357e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.321583e6

QD
type: SiteQuality
SIO_000300: 1.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.65e-1

FS
type: SiteQuality
SIO_000300: 5.1418e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15215
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variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28909
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variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 7.75e1
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GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 212
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variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.182033096926714e-4
allele num: 8460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.715442412598209e-5
allele num: 58294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.972457627118644e-4
allele num: 7552
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.041016031646887e-4
allele num: 9606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.366680333470001e-4
allele num: 14634
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.43e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

DP
type: SiteQuality
SIO_000300: 1.281135e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 1.221e1

GenotypeQuality
all individuals: 500
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
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GenotypeQuality
all individuals: 953
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 4.25e1
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GenotypeQuality
all individuals: 4681
bin: 6.75e1
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GenotypeQuality
all individuals: 16531
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
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GenotypeQuality
all individuals: 699
bin: 5.75e1
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GenotypeQuality
all individuals: 553
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variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.735267578260568e-5
allele num: 57628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14516
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.95e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.25358e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

GenotypeQuality
all individuals: 29045
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
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variant carriers: 0

GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 1617
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variant carriers: 0

GenotypeQuality
all individuals: 200
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variant carriers: 0

GenotypeQuality
all individuals: 1686
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variant carriers: 0

GenotypeQuality
all individuals: 400
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GenotypeQuality
all individuals: 443
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GenotypeQuality
all individuals: 1032
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GenotypeQuality
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GenotypeQuality
all individuals: 473
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GenotypeQuality
all individuals: 509
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GenotypeQuality
all individuals: 628
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.737136504186499e-5
allele num: 57566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14512
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.123142250530786e-4
allele num: 9420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5308
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 2.017213555675094e-3
allele num: 7436
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

QD
type: SiteQuality
SIO_000300: 1.285e1

FS
type: SiteQuality
SIO_000300: 2.809e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.659e0

DP
type: SiteQuality
SIO_000300: 1.251381e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 365
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28247
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 7.5e0
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GenotypeQuality
all individuals: 2682
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16430
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2610
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.02420954617222e-5
allele num: 49402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.286e1

FS
type: SiteQuality
SIO_000300: 2.115e0

VQSLOD
type: SiteQuality
SIO_000300: 9.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

DP
type: SiteQuality
SIO_000300: 1.006408e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

GenotypeQuality
all individuals: 610
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 229
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.028891413731537e-5
allele num: 49288
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.994460248540201e-4
allele num: 13358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

FS
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.742e0

DP
type: SiteQuality
SIO_000300: 1.003779e6

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

QD
type: SiteQuality
SIO_000300: 1.275e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 309
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
bin: 7.5e0
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GenotypeQuality
all individuals: 750
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variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 9.75e1
variant carriers: 13

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.891844997108155e-4
allele num: 44954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 1.364e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.409e1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 9.14594e5

GenotypeQuality
all individuals: 3886
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9722
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
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variant carriers: 0

GenotypeQuality
all individuals: 947
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variant carriers: 0

GenotypeQuality
all individuals: 466
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variant carriers: 0

GenotypeQuality
all individuals: 189
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GenotypeQuality
all individuals: 609
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variant carriers: 2

GenotypeQuality
all individuals: 334
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variant carriers: 0

GenotypeQuality
all individuals: 1791
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variant carriers: 0

GenotypeQuality
all individuals: 302
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variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.862867146469558e-5
allele num: 41128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5272
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.223e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

VQSLOD
type: SiteQuality
SIO_000300: -2.317e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.78e-1

FS
type: SiteQuality
SIO_000300: 1.4785e1

DP
type: SiteQuality
SIO_000300: 8.55043e5

GenotypeQuality
all individuals: 418
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5663
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
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GenotypeQuality
all individuals: 6963
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variant carriers: 0

GenotypeQuality
all individuals: 2267
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variant carriers: 0

GenotypeQuality
all individuals: 2035
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1466
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variant carriers: 0

GenotypeQuality
all individuals: 201
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variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33960
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.909854851031322e-4
allele num: 5236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4740
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

DP
type: SiteQuality
SIO_000300: 7.65672e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.51e-1

FS
type: SiteQuality
SIO_000300: 1.05e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

QD
type: SiteQuality
SIO_000300: 9.48e0

GenotypeQuality
all individuals: 603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34617
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
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GenotypeQuality
all individuals: 1004
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
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GenotypeQuality
all individuals: 233
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5246
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.530364372469636e-4
allele num: 3952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3024
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.63453e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

QD
type: SiteQuality
SIO_000300: 1.49e1

GenotypeQuality
all individuals: 5390
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36184
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variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1525
bin: 6.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.073312363900314e-5
allele num: 33064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11172
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 9.255000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

QD
type: SiteQuality
SIO_000300: 1.3e1

DP
type: SiteQuality
SIO_000300: 7.51762e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.879e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 134
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.75e1
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GenotypeQuality
all individuals: 72
bin: 5.25e1
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GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 3.75e1
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GenotypeQuality
all individuals: 34628
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9187
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GenotypeQuality
all individuals: 689
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variant carriers: 0

GenotypeQuality
all individuals: 426
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GenotypeQuality
all individuals: 1436
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GenotypeQuality
all individuals: 203
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GenotypeQuality
all individuals: 625
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 470
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.996431819771916e-5
allele num: 28586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3142
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.109e0

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

DP
type: SiteQuality
SIO_000300: 6.93858e5

QD
type: SiteQuality
SIO_000300: 5.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

GenotypeQuality
all individuals: 12534
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
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GenotypeQuality
all individuals: 43
bin: 5.75e1
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GenotypeQuality
all individuals: 1469
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
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GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 5559
bin: 6.25e1
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GenotypeQuality
all individuals: 588
bin: 7.25e1
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GenotypeQuality
all individuals: 623
bin: 9.75e1
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GenotypeQuality
all individuals: 683
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2358
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4198
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2706
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2692
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.55308e5

QD
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SIO_000300: 1.406e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.58e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1934
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.783964365256125e-4
allele num: 3592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20916
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1770
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.935e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -3.55e-2

MQ
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SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.07e-1

FS
type: SiteQuality
SIO_000300: 4.033e0

QD
type: SiteQuality
SIO_000300: 1.056e1

DP
type: SiteQuality
SIO_000300: 5.96566e5

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1694
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1650
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18322
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.07e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 5.66271e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.259e0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10990
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2350
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.111e-1

QD
type: SiteQuality
SIO_000300: 1.064e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.25e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.45948e5

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.55e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 3.7054e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.367e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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QD
type: SiteQuality
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FS
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MQ
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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DP
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QD
type: SiteQuality
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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African
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South Asian
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Other
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East Asian
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Latino
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num of homozygotes: 0

MQ
type: SiteQuality
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BaseQRankSum
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QD
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

African
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South Asian
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Other
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566808723990975e-5
allele num: 63824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.304382e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.088e0

QD
type: SiteQuality
SIO_000300: 1.48e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

GenotypeQuality
all individuals: 6151
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1542
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30261
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3375
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64168
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.017132551848512e-5
allele num: 11090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.799e1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

QD
type: SiteQuality
SIO_000300: 1.293e1

DP
type: SiteQuality
SIO_000300: 1.366527e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.081e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

GenotypeQuality
all individuals: 1097
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2633
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 35597
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 211
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6717
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 336
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1162
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2069
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3023
bin: 9.75e1
variant carriers: 781

GenotypeQuality
all individuals: 453
bin: 8.75e1
variant carriers: 2

Other
type: Population
allele count: 3
allele frequency: 3.480278422273782e-3
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 1.568709475005229e-3
allele num: 9562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 669
allele frequency: 1.03336422613531e-2
allele num: 64740
num of homozygotes: 4

South Asian
type: Population
allele count: 48
allele frequency: 3.205984504408229e-3
allele num: 14972
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 35
allele frequency: 5.441542288557214e-3
allele num: 6432
num of homozygotes: 0

Latino
type: Population
allele count: 37
allele frequency: 3.305932809149393e-3
allele num: 11192
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

DP
type: SiteQuality
SIO_000300: 1.441809e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

FS
type: SiteQuality
SIO_000300: 3.301e0

QD
type: SiteQuality
SIO_000300: 1.163e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

GenotypeQuality
all individuals: 547
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36009
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
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variant carriers: 0

GenotypeQuality
all individuals: 2482
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variant carriers: 0

GenotypeQuality
all individuals: 6966
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.608511763150938e-5
allele num: 15132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.751e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
SIO_000300: 3.228e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.181e0

DP
type: SiteQuality
SIO_000300: 1.450319e6

GenotypeQuality
all individuals: 1979
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7200
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
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variant carriers: 0

GenotypeQuality
all individuals: 38075
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variant carriers: 0

GenotypeQuality
all individuals: 554
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variant carriers: 0

GenotypeQuality
all individuals: 465
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variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2190
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.061380682687892e-5
allele num: 65330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.721e0

FS
type: SiteQuality
SIO_000300: 1.2167e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.223e0

QD
type: SiteQuality
SIO_000300: 9.73e0

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

DP
type: SiteQuality
SIO_000300: 1.480125e6

GenotypeQuality
all individuals: 634
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1872
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 281
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variant carriers: 0

GenotypeQuality
all individuals: 38028
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7104
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 532
bin: 5.25e1
variant carriers: 1

African
type: Population
allele count: 15
allele frequency: 1.557308970099668e-3
allele num: 9632
num of homozygotes: 0

Latino
type: Population
allele count: 53
allele frequency: 4.696083643452064e-3
allele num: 11286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 17
allele frequency: 2.624266748996604e-3
allele num: 6478
num of homozygotes: 0

South Asian
type: Population
allele count: 35
allele frequency: 2.233852438090375e-3
allele num: 15668
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 7.990867579908675e-3
allele num: 876
num of homozygotes: 1

East Asian
type: Population
allele count: 9
allele frequency: 1.053617419808008e-3
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 558
allele frequency: 8.535503411142044e-3
allele num: 65374
num of homozygotes: 2

FS
type: SiteQuality
SIO_000300: 2.856e0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.491491e6

QD
type: SiteQuality
SIO_000300: 1.212e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

GenotypeQuality
all individuals: 589
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 1818
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variant carriers: 0

GenotypeQuality
all individuals: 658
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variant carriers: 0

GenotypeQuality
all individuals: 2269
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variant carriers: 2

GenotypeQuality
all individuals: 239
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variant carriers: 0

GenotypeQuality
all individuals: 778
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GenotypeQuality
all individuals: 460
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 38863
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.056421541659025e-5
allele num: 65436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15764
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

DP
type: SiteQuality
SIO_000300: 1.490649e6

QD
type: SiteQuality
SIO_000300: 1.305e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

FS
type: SiteQuality
SIO_000300: 4.575e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 366
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7347
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.051385328939338e-5
allele num: 65544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

DP
type: SiteQuality
SIO_000300: 1.494729e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.134e1

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

FS
type: SiteQuality
SIO_000300: 1.368e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2270
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
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GenotypeQuality
all individuals: 1714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
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variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7347
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525692664469669e-5
allele num: 65544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

FS
type: SiteQuality
SIO_000300: 1.368e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

DP
type: SiteQuality
SIO_000300: 1.494729e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

QD
type: SiteQuality
SIO_000300: 1.134e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

GenotypeQuality
all individuals: 809
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7200
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 7.25e1
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GenotypeQuality
all individuals: 759
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 9.75e1
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GenotypeQuality
all individuals: 1071
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65744
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.824567596187787e-5
allele num: 11332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.225e1

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.309e0

DP
type: SiteQuality
SIO_000300: 1.506233e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

FS
type: SiteQuality
SIO_000300: 1.083e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2363
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7204
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1835
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520588771972508e-5
allele num: 65764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.889999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.505395e6

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.159e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 1.428e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
all individuals: 567
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.2306177701206e-4
allele num: 16252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65744
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e-1

DP
type: SiteQuality
SIO_000300: 1.505342e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.424e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.861e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

MQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

GenotypeQuality
all individuals: 1900
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 940
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1004
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 883
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 9.25e1
variant carriers: 12

GenotypeQuality
all individuals: 911
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 6752
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 821
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 853
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4917
bin: 9.75e1
variant carriers: 2915

GenotypeQuality
all individuals: 349
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1871
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 389
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2174
bin: 7.25e1
variant carriers: 5

Latino
type: Population
allele count: 150
allele frequency: 1.324854266030737e-2
allele num: 11322
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 2026
allele frequency: 3.081837541831457e-2
allele num: 65740
num of homozygotes: 27

African
type: Population
allele count: 213
allele frequency: 2.21183800623053e-2
allele num: 9630
num of homozygotes: 2

Other
type: Population
allele count: 22
allele frequency: 2.477477477477477e-2
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 445
allele frequency: 6.858816276202219e-2
allele num: 6488
num of homozygotes: 16

East Asian
type: Population
allele count: 1
allele frequency: 1.169317118802619e-4
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 167
allele frequency: 1.02693395646292e-2
allele num: 16262
num of homozygotes: 3

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.86e0

QD
type: SiteQuality
SIO_000300: 1.273e1

DP
type: SiteQuality
SIO_000300: 1.538682e6

GenotypeQuality
all individuals: 2174
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7029
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2318
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521745746720638e-5
allele num: 65714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.044e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 2.707e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

DP
type: SiteQuality
SIO_000300: 1.506088e6

GenotypeQuality
all individuals: 937
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2028
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variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 420
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variant carriers: 0

GenotypeQuality
all individuals: 985
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variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 931
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7047
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.829242450997704e-5
allele num: 11326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65740
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.506305e6

VQSLOD
type: SiteQuality
SIO_000300: -3.118e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 5.035e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.288e0

QD
type: SiteQuality
SIO_000300: 7.2e0

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 917
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
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variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37415
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.156877231867996e-5
allele num: 16242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65682
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

DP
type: SiteQuality
SIO_000300: 1.50263e6

QD
type: SiteQuality
SIO_000300: 1.139e1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 2.552e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37340
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
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variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6949
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variant carriers: 0

GenotypeQuality
all individuals: 402
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variant carriers: 0

GenotypeQuality
all individuals: 179
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variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.157635467980295e-5
allele num: 16240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.835e0

MQRankSum
type: SiteQuality
SIO_000300: -8.93e-1

FS
type: SiteQuality
SIO_000300: 1.2516e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

QD
type: SiteQuality
SIO_000300: 1.009e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.9e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 1.4989e6

GenotypeQuality
all individuals: 6875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37400
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524622655892666e-5
allele num: 65590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16242
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

FS
type: SiteQuality
SIO_000300: 4.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.439e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 1.498504e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 37222
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6872
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 986
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.551349674216568e-4
allele num: 6446
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.196e0

MQRankSum
type: SiteQuality
SIO_000300: 9.16e-1

FS
type: SiteQuality
SIO_000300: 7.129e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 4.48e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.494698e6