20-58420198-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420198
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420197
    reference: chr 20
allele count: 6
allele frequency: 6.512819399518052e-5
allele num: 92126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1465-39delT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1579-39delT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1255-39delT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1255-39delT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1465-39delT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1696delT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.912-39delT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1588-39delT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1465-39delT
  variant of: http://identifiers.org/hgnc/15833
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11568
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18061
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4378
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4195
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: AT
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

20-58420198-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420198
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420198
    reference: chr 20
allele count: 1
allele frequency: 1.085469899919675e-5
allele num: 92126
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1588-46A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1465-46A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1579-46A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1255-46A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1465-46A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1689A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.912-46A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1255-46A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1465-46A>G
  variant of: http://identifiers.org/hgnc/15833
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6981
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7638
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6662
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4821
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

20-58420200-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420200
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420200
    reference: chr 20
allele count: 1
allele frequency: 1.077330805197044e-5
allele num: 92822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1691T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1255-44T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.912-44T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1579-44T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1465-44T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1465-44T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1465-44T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1255-44T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1588-44T>G
  variant of: http://identifiers.org/hgnc/15833
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10735
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6987
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

20-58420202-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420202
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420202
    reference: chr 20
allele count: 5
allele frequency: 5.352860568687907e-5
allele num: 93408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1579-42T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1255-42T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1465-42T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1255-42T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.912-42T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1693T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1588-42T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1465-42T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1465-42T>C
  variant of: http://identifiers.org/hgnc/15833
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11878
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17900
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum

20-58420205-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420205
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420205
    reference: chr 20
allele count: 7
allele frequency: 7.496251874062968e-5
allele num: 93380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1579-39T>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1465-39T>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1465-39T>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1465-39T>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1255-39T>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.912-39T>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1696T>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1588-39T>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1255-39T>A
  variant of: http://identifiers.org/hgnc/15833
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11603
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17611
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11987
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8491
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4195
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4363
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2672
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9672
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

20-58420208-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420208
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420208
    reference: chr 20
allele count: 1
allele frequency: 1.065144220527459e-5
allele num: 93884
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1465-36T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1699T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1588-36T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1465-36T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1255-36T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1579-36T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1465-36T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1255-36T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.912-36T>C
  variant of: http://identifiers.org/hgnc/15833
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6770
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4194
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7366
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

20-58420210-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420210
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420210
    reference: chr 20
allele count: 4
allele frequency: 4.248359071308707e-5
allele num: 94154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1465-34T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1255-34T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1579-34T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1465-34T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1465-34T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1701T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1588-34T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.912-34T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1255-34T>C
  variant of: http://identifiers.org/hgnc/15833
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16004
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5534
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

20-58420221-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420221
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420221
    reference: chr 20
allele count: 1
allele frequency: 1.012248203259439e-5
allele num: 98790
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.912-23A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1465-23A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1579-23A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1712A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1588-23A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1465-23A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1465-23A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1255-23A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1255-23A>G
  variant of: http://identifiers.org/hgnc/15833
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27144
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10860
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4027
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

20-58420224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420224
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420224
    reference: chr 20
allele count: 2
allele frequency: 1.994614540740002e-5
allele num: 100270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1465-20G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1715G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1579-20G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1465-20G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1255-20G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1588-20G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1465-20G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.912-20G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1255-20G>A
  variant of: http://identifiers.org/hgnc/15833
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3382
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

20-58420226-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420226
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420224
    reference: chr 20
allele count: 1
allele frequency: 9.868745682423763e-6
allele num: 101330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1255-17_1255-16delTT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1465-17_1465-16delTT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1465-17_1465-16delTT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1579-17_1579-16delTT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1588-17_1588-16delTT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1718_1719delTT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.912-17_912-16delTT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1255-17_1255-16delTT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1465-17_1465-16delTT
  variant of: http://identifiers.org/hgnc/15833
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29655
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: CTT
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

20-58420255-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420255
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420255
    reference: chr 20
allele count: 13
allele frequency: 1.13949126097856e-4
allele num: 114086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1476T>C
  hgvsp: ENST00000355648.4:c.1476T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1266T>C
  hgvsp: ENST00000395639.4:c.1266T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.923T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1476T>C
  hgvsp: ENST00000541461.1:c.1476T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1266T>C
  hgvsp: ENST00000361300.4:c.1266T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1476T>C
  hgvsp: ENST00000395636.2:c.1476T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1590T>C
  hgvsp: ENST00000359926.3:c.1590T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1599T>C
  hgvsp: ENST00000371015.1:c.1599T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1746T>C
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39373
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39719
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg533Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum

20-58420270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420270
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420270
    reference: chr 20
allele count: 1
allele frequency: 8.598895901766214e-6
allele num: 116294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1491G>A
  hgvsp: ENST00000541461.1:c.1491G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1614G>A
  hgvsp: ENST00000371015.1:c.1614G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1605G>A
  hgvsp: ENST00000359926.3:c.1605G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1281G>A
  hgvsp: ENST00000361300.4:c.1281G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1491G>A
  hgvsp: ENST00000395636.2:c.1491G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.938G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1281G>A
  hgvsp: ENST00000395639.4:c.1281G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1491G>A
  hgvsp: ENST00000355648.4:c.1491G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1761G>A
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41461
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu538Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

20-58420297-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420297
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420297
    reference: chr 20
allele count: 1
allele frequency: 8.488964346349745e-6
allele num: 117800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1632T>C
  hgvsp: ENST00000359926.3:c.1632T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1308T>C
  hgvsp: ENST00000395639.4:c.1308T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1518T>C
  hgvsp: ENST00000541461.1:c.1518T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1641T>C
  hgvsp: ENST00000371015.1:c.1641T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1308T>C
  hgvsp: ENST00000361300.4:c.1308T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.965T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1518T>C
  hgvsp: ENST00000395636.2:c.1518T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1518T>C
  hgvsp: ENST00000355648.4:c.1518T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1788T>C
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His547His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

20-58420299-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420299
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420299
    reference: chr 20
allele count: 3
allele frequency: 2.546257002206756e-5
allele num: 117820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1520C>T
  hgvsp: ENSP00000347866.4:p.Ala507Val
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.967C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1790C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1520C>T
  hgvsp: ENSP00000378998.2:p.Ala507Val
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1643C>T
  hgvsp: ENSP00000360054.1:p.Ala548Val
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1310C>T
  hgvsp: ENSP00000354555.4:p.Ala437Val
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1310C>T
  hgvsp: ENSP00000379001.4:p.Ala437Val
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1520C>T
  hgvsp: ENSP00000442483.1:p.Ala507Val
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1634C>T
  hgvsp: ENSP00000353002.3:p.Ala545Val
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39951
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala548Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

20-58420318-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420318
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420318
    reference: chr 20
allele count: 3
allele frequency: 2.547987090198743e-5
allele num: 117740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1539A>G
  hgvsp: ENST00000355648.4:c.1539A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1662A>G
  hgvsp: ENST00000371015.1:c.1662A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1809A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.986A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1653A>G
  hgvsp: ENST00000359926.3:c.1653A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1539A>G
  hgvsp: ENST00000395636.2:c.1539A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1329A>G
  hgvsp: ENST00000395639.4:c.1329A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1539A>G
  hgvsp: ENST00000541461.1:c.1539A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1329A>G
  hgvsp: ENST00000361300.4:c.1329A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1662A>G
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/20-58420334-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420334
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420334
    reference: chr 20
allele count: 2
allele frequency: 1.711683954674609e-5
allele num: 116844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1331+14C>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1541+14C>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.988+14C>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1331+14C>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1541+14C>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1664+14C>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1811+14C>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1655+14C>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1541+14C>A
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9780
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

20-58420336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420336
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420336
    reference: chr 20
allele count: 70886
allele frequency: 6.042107057620184e-1
allele num: 117320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1541+16G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1811+16G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1331+16G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.988+16G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1664+16G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1541+16G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1655+16G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1541+16G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1331+16G>A
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 3.75e1
  variant carriers: 5957
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 7.5e0
  variant carriers: 553
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 4.25e1
  variant carriers: 4046
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 5.75e1
  variant carriers: 943
genotype depth: GenotypeDepth
  all individuals: 7897
  bin: 3.25e1
  variant carriers: 7369
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 9.75e1
  variant carriers: 3002
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 4.75e1
  variant carriers: 2728
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 1683
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 1.25e1
  variant carriers: 2273
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 9257
  bin: 2.75e1
  variant carriers: 7570
genotype depth: GenotypeDepth
  all individuals: 11917
  bin: 2.25e1
  variant carriers: 6723
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 1.75e1
  variant carriers: 4648
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 616
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 321
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 459
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.75e1
  variant carriers: 149
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 8.75e1
  variant carriers: 738
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 3.75e1
  variant carriers: 621
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 7.25e1
  variant carriers: 823
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.5e0
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 6.75e1
  variant carriers: 1324
num of homozygotes: 22030
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

20-58420351-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420351
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420351
    reference: chr 20
allele count: 1
allele frequency: 9.546903939052565e-6
allele num: 104746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1655+31C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1331+31C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1541+31C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.988+31C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1811+31C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1541+31C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1664+31C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1541+31C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1331+31C>T
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25357
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

20-58420354-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420354
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420354
    reference: chr 20
allele count: 1
allele frequency: 9.665758085406639e-6
allele num: 103458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1331+34A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1331+34A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1541+34A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1664+34A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1541+34A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1811+34A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.988+34A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1655+34A>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1541+34A>G
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27315
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/20-58420367-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420367
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420367
    reference: chr 20
allele count: 1
allele frequency: 1.347599924534404e-5
allele num: 74206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1541+47A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1331+47A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1541+47A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1664+47A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1331+47A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.988+47A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1655+47A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1541+47A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1811+47A>C
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11696
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4508
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5844
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9694
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/20-58420369-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420369
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420369
    reference: chr 20
allele count: 57
allele frequency: 1.089241352952417e-3
allele num: 52330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1541+49A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.988+49A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1664+49A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1541+49A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1811+49A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1331+49A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1655+49A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1331+49A>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1541+49A>C
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18910
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19007
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10093
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6130
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

20-58420371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420371
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420371
    reference: chr 20
allele count: 187
allele frequency: 3.27667776414929e-3
allele num: 57070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1811+51C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1655+51C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1541+51C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1331+51C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1664+51C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1331+51C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1541+51C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.988+51C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1541+51C>T
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 19514
  bin: 7.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19578
  bin: 1.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 9933
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 6218
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 11742
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 2
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

20-58420372-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58420372
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58420372
    reference: chr 20
allele count: 1
allele frequency: 1.800958109714368e-5
allele num: 55526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1811+52G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1541+52G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1655+52G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1664+52G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1331+52G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1541+52G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1541+52G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1331+52G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.988+52G>A
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19751
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8678
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11321
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3300
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

20-58422123-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422123
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422123
    reference: chr 20
allele count: 1
allele frequency: 8.414391976035812e-6
allele num: 118844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1542-47C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1812-47C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1665-47C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1332-47C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1542-47C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1332-47C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.989-47C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1656-47C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1542-47C>T
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11623
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

20-58422124-T-TAGAAATGAATAACCTTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422124
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422141
    reference: chr 20
allele count: 1
allele frequency: 8.407883231317684e-6
allele num: 118936
alternate allele: TAGAAATGAATAACCTTA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13193
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

20-58422126-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422126
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422126
    reference: chr 20
allele count: 353
allele frequency: 2.968182429705368e-3
allele num: 118928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1542-44G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1665-44G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1542-44G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1332-44G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1332-44G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1656-44G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.989-44G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1812-44G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1542-44G>A
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14722
  bin: 2.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 3.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 1.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 12526
  bin: 2.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

20-58422130-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422130
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422130
    reference: chr 20
allele count: 16
allele frequency: 1.344289291055435e-4
allele num: 119022
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1665-40T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1812-40T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1332-40T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1542-40T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1542-40T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.989-40T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1542-40T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1656-40T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1332-40T>C
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13554
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14907
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

20-58422130-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422130
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422130
    reference: chr 20
allele count: 1
allele frequency: 8.40180806909647e-6
allele num: 119022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1542-40T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1542-40T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1665-40T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1332-40T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1542-40T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1656-40T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1332-40T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1812-40T>G
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.989-40T>G
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13159
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6232
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

20-58422134-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422134
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422135
    reference: chr 20
allele count: 6
allele frequency: 5.03998387205161e-5
allele num: 119048
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1332-34dupA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.989-34dupA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1656-34dupA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1542-34dupA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1332-34dupA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1542-34dupA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1542-34dupA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1665-34dupA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1812-34dupA
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

20-58422134-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422134
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422133
    reference: chr 20
allele count: 1
allele frequency: 8.399973120086016e-6
allele num: 119048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1812-34delA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1656-34delA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1332-34delA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1332-34delA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1665-34delA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1542-34delA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1542-34delA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.989-34delA
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1542-34delA
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: TA
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

20-58422136-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422136
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422136
    reference: chr 20
allele count: 29
allele frequency: 2.435051304011957e-4
allele num: 119094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.989-34A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1542-34A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1542-34A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1665-34A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1542-34A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1332-34A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1656-34A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1332-34A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1812-34A>T
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15195
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14582
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6257
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

20-58422148-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422148
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422148
    reference: chr 20
allele count: 2
allele frequency: 1.677880501350694e-5
allele num: 119198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1332-22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1542-22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1656-22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1542-22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1332-22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.989-22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1812-22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1665-22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1542-22T>C
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15698
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26689
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum

20-58422148-TTGTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422148
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422144
    reference: chr 20
allele count: 2
allele frequency: 1.677880501350694e-5
allele num: 119198
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1665-20_1665-17delGTCT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1332-20_1332-17delGTCT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1332-20_1332-17delGTCT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1812-20_1812-17delGTCT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1542-20_1542-17delGTCT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.989-20_989-17delGTCT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1542-20_1542-17delGTCT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1542-20_1542-17delGTCT
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1656-20_1656-17delGTCT
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: TTGTC
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

20-58422159-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422159
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422159
    reference: chr 20
allele count: 6
allele frequency: 5.028157683024939e-5
allele num: 119328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.1332-11A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.1542-11A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.1656-11A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.989-11A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.1332-11A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.1665-11A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1812-11A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.1542-11A>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.1542-11A>T
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

20-58422187-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422187
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422187
    reference: chr 20
allele count: 2
allele frequency: 1.674144512154289e-5
allele num: 119464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.*2G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.*2G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.1006G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1829G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.*2G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.*2G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000442483
  ensembl transcript: ENST00000541461
  gene symbol: PHACTR3
  hgvsc: ENST00000541461.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.*2G>A
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD

20-58422207-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422207
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422207
    reference: chr 20
allele count: 1
allele frequency: 8.392500461587526e-6
allele num: 119154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.1026T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1849T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.*22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.*22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.*22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.*22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.*22T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.*22T>C
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13129
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

20-58422209-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422209
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422209
    reference: chr 20
allele count: 1
allele frequency: 8.393345755485052e-6
allele num: 119142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.*24G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.*24G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1851G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.*24G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.*24G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.1028G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.*24G>A
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.*24G>A
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

20-58422217-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422217
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422217
    reference: chr 20
allele count: 1
allele frequency: 8.406610958858046e-6
allele num: 118954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.*32T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.*32T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.1036T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.*32T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.*32T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.*32T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.*32T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1859T>C
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20426
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13123
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5498
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

20-58422222-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422222
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422222
    reference: chr 20
allele count: 2
allele frequency: 1.681831177786374e-5
allele num: 118918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1864T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.*37T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.*37T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.*37T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.*37T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.*37T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.*37T>C
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.1041T>C
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13064
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18322
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13124
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

20-58422227-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422227
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422227
    reference: chr 20
allele count: 2
allele frequency: 1.686738859089836e-5
allele num: 118572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.*42C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1869C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.*42C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.*42C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.*42C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.*42C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.*42C>T
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.1046C>T
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8795
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

20-58422237-A-AAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58422237
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58422239
    reference: chr 20
allele count: 1
allele frequency: 8.479031355457952e-6
allele num: 117938
alternate allele: AAG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000354555
  ensembl transcript: ENST00000361300
  gene symbol: PHACTR3
  hgvsc: ENST00000361300.4:c.*52_*53insAG
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000347866
  ensembl transcript: ENST00000355648
  gene symbol: PHACTR3
  hgvsc: ENST00000355648.4:c.*52_*53insAG
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000353002
  ensembl transcript: ENST00000359926
  gene symbol: PHACTR3
  hgvsc: ENST00000359926.3:c.*52_*53insAG
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000360054
  ensembl transcript: ENST00000371015
  gene symbol: PHACTR3
  hgvsc: ENST00000371015.1:c.*52_*53insAG
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000473657
  gene symbol: PHACTR3
  hgvsc: ENST00000473657.1:n.1879_1880insAG
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000378998
  ensembl transcript: ENST00000395636
  gene symbol: PHACTR3
  hgvsc: ENST00000395636.2:c.*52_*53insAG
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000087495
  ensembl protein: ENSP00000379001
  ensembl transcript: ENST00000395639
  gene symbol: PHACTR3
  hgvsc: ENST00000395639.4:c.*52_*53insAG
  variant of: http://identifiers.org/hgnc/15833
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000087495
  ensembl transcript: ENST00000492611
  gene symbol: PHACTR3
  hgvsc: ENST00000492611.1:n.1056_1057insAG
  variant of: http://identifiers.org/hgnc/15833
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

20-58425444-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425444
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425444
    reference: chr 20
allele count: 1
allele frequency: 1.329327626086725e-5
allele num: 75226
alternate allele: A
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.380158994620841e-5
  allele num: 42014
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population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7802
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6886
  num of homozygotes: 0
population: African
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  allele count: 0
  allele frequency: 0.0e0
  allele num: 6190
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

20-58425446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425446
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425446
    reference: chr 20
allele count: 8
allele frequency: 1.069833373452085e-4
allele num: 74778
alternate allele: T
canonical: true
consequence: downstream gene
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5420
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population: East Asian
  type: Population
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  allele num: 6324
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population: Latino
  type: Population
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population: South Asian
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  allele frequency: 1.471453796350795e-4
  allele num: 6796
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum

20-58425447-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425447
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425447
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 74884
alternate allele: A
canonical: true
consequence: downstream gene
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7756
  num of homozygotes: 0
population: East Asian
  type: Population
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  allele num: 6320
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population: European (Finnish)
  type: Population
  allele count: 0
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  allele num: 5428
  num of homozygotes: 0
population: South Asian
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  allele count: 0
  allele frequency: 0.0e0
  allele num: 6864
  num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/20-58425452-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425452
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425452
    reference: chr 20
allele count: 2
allele frequency: 2.661060698794539e-5
allele num: 75158
alternate allele: A
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 550
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population: South Asian
  type: Population
  allele count: 2
  allele frequency: 2.899391127863149e-4
  allele num: 6898
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6338
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 41988
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

20-58425452-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425452
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425452
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 75158
alternate allele: T
canonical: true
consequence: downstream gene
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15763
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4958
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4363
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10804
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7776
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6184
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5424
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6338
  num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

20-58425460-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425460
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425460
    reference: chr 20
allele count: 19
allele frequency: 2.518424261704045e-4
allele num: 75444
alternate allele: G
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11086
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14458
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16091
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4721
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12810
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5444
  num of homozygotes: 0
population: African
  type: Population
  allele count: 17
  allele frequency: 2.741935483870968e-3
  allele num: 6200
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 1.283697047496791e-4
  allele num: 7790
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.576292559899117e-4
  allele num: 6344
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

20-58425463-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425463
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425464
    reference: chr 20
allele count: 14
allele frequency: 1.870907390084191e-4
allele num: 74830
alternate allele: GT
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11913
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14021
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
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genotype quality: GenotypeQuality
  all individuals: 140
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genotype quality: GenotypeQuality
  all individuals: 2303
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genotype quality: GenotypeQuality
  all individuals: 572
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genotype quality: GenotypeQuality
  all individuals: 3615
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 241
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genotype quality: GenotypeQuality
  all individuals: 115
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genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18586
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 4523
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genotype quality: GenotypeQuality
  all individuals: 844
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 461
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3231
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genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 13465
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7700
  num of homozygotes: 0
population: African
  type: Population
  allele count: 11
  allele frequency: 1.783398184176394e-3
  allele num: 6168
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6312
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5384
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

20-58425463-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425463
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425462
    reference: chr 20
allele count: 2
allele frequency: 2.672724842977415e-5
allele num: 74830
alternate allele: G
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16128
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14021
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11913
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 886
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 13465
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18586
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genotype quality: GenotypeQuality
  all individuals: 3615
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
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genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 241
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genotype quality: GenotypeQuality
  all individuals: 844
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 140
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5384
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 41716
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 1.298701298701299e-4
  allele num: 7700
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6168
  num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
reference allele: GT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

20-58425468-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425468
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425468
    reference: chr 20
allele count: 1
allele frequency: 1.314094982785356e-5
allele num: 76098
alternate allele: C
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 5476
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population: East Asian
  type: Population
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  allele num: 6390
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population: Other
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  allele num: 558
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population: African
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  allele frequency: 0.0e0
  allele num: 6214
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

20-58425471-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425471
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425471
    reference: chr 20
allele count: 3
allele frequency: 3.944980669594719e-5
allele num: 76046
alternate allele: G
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
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  allele num: 6388
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population: South Asian
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  allele num: 7278
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population: Latino
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  allele frequency: 0.0e0
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population: African
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  allele num: 6212
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/20-58425477-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425477
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425477
    reference: chr 20
allele count: 1
allele frequency: 1.302083333333333e-5
allele num: 76800
alternate allele: C
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.342249496416358e-5
  allele num: 42694
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population: Other
  type: Population
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  allele num: 562
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population: East Asian
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population: South Asian
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  allele num: 7500
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population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
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site quality: FS
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20-58425478-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425478
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425476
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 76874
alternate allele: C
canonical: true
consequence: downstream gene
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
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genotype depth: GenotypeDepth
  all individuals: 144
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
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  allele num: 7544
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population: European (Non-Finnish)
  type: Population
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  allele num: 42734
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population: European (Finnish)
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  allele count: 0
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population: Latino
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  allele num: 7864
  num of homozygotes: 0
population: East Asian
population: African
population: Other
reference allele: CCT
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
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site quality: DP

20-58425479-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425479
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425478
    reference: chr 20
allele count: 3
allele frequency: 3.913894324853229e-5
allele num: 76650
alternate allele: C
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: African
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population: Latino
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  allele num: 7820
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5486
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6422
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: CT
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

20-58425491-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425491
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425491
    reference: chr 20
allele count: 31
allele frequency: 3.987138263665595e-4
allele num: 77750
alternate allele: C
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16159
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18706
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10195
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 143
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1341
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  variant carriers: 30
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21445
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 25
  allele frequency: 4.543802253725917e-3
  allele num: 5502
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6474
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7894
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 4
  allele frequency: 9.279020135473695e-5
  allele num: 43108
  num of homozygotes: 0
population: African
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

20-58425495-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425495
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425495
    reference: chr 20
allele count: 2
allele frequency: 2.579313902501935e-5
allele num: 77540
alternate allele: T
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19715
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1323
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 257
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genotype quality: GenotypeQuality
  all individuals: 482
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1650
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 281
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genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7950
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.594387755102041e-4
  allele num: 6272
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5470
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6460
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

20-58425507-TCTCAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425507
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425502
    reference: chr 20
allele count: 1
allele frequency: 1.290222692436715e-5
allele num: 77506
alternate allele: T
canonical: true
consequence: downstream gene
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5337
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 138
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 472
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 53
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 846
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8044
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7844
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6422
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.596424010217114e-4
  allele num: 6264
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TCTCAG
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

20-58425509-TCAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425509
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425506
    reference: chr 20
allele count: 538
allele frequency: 6.925136443208732e-3
allele num: 77688
alternate allele: T
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 2.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 12447
  bin: 1.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 144
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genotype depth: GenotypeDepth
  all individuals: 279
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  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 114
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genotype depth: GenotypeDepth
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  variant carriers: 162
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 138
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 185
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genotype depth: GenotypeDepth
  all individuals: 155
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 148
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 492
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genotype quality: GenotypeQuality
  all individuals: 117
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genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 9.75e1
  variant carriers: 547
genotype quality: GenotypeQuality
  all individuals: 332
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genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.25e1
  variant carriers: 3
num of homozygotes: 1
population: European (Non-Finnish)
  type: Population
  allele count: 467
  allele frequency: 1.08397938814354e-2
  allele num: 43082
  num of homozygotes: 1
population: South Asian
  type: Population
  allele count: 3
  allele frequency: 3.729487817006464e-4
  allele num: 8044
  num of homozygotes: 0
population: African
  type: Population
  allele count: 11
  allele frequency: 1.757750079897731e-3
  allele num: 6258
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 1
  allele frequency: 1.773049645390071e-3
  allele num: 564
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
reference allele: TCAG
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

20-58425512-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425512
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425512
    reference: chr 20
allele count: 5
allele frequency: 6.546902005970774e-5
allele num: 76372
alternate allele: A
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13334
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 914
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 566
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8024
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7760
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 41992
  num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

20-58425521-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425521
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425521
    reference: chr 20
allele count: 1
allele frequency: 1.304835721182703e-5
allele num: 76638
alternate allele: T
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.359046945034206e-5
  allele num: 42390
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7996
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6214
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5422
  num of homozygotes: 0
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

20-58425530-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425530
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425530
    reference: chr 20
allele count: 47
allele frequency: 6.176246419091172e-4
allele num: 76098
alternate allele: C
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18509
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7890
  num of homozygotes: 0
population: African
  type: Population
  allele count: 43
  allele frequency: 6.953428201811125e-3
  allele num: 6184
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population: Other
  type: Population
  allele count: 1
  allele frequency: 1.785714285714286e-3
  allele num: 560
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 42074
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

20-58425537-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58425537
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58425537
    reference: chr 20
allele count: 9
allele frequency: 1.19782793867121e-4
allele num: 75136
alternate allele: A
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 15296
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5378
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 1.320655044902272e-4
  allele num: 7572
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population: South Asian
  type: Population
  allele count: 0
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  allele num: 7684
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population: East Asian
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  allele frequency: 0.0e0
  allele num: 6292
  num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

20-58439318-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58439318
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58439318
    reference: chr 20
allele count: 1
allele frequency: 1.746419839329375e-5
allele num: 57260
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000350162
  ensembl transcript: ENST00000357552
  gene symbol: SYCP2
  hgvsc: ENST00000357552.3:c.*48A>G
  variant of: http://identifiers.org/hgnc/11490
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000360040
  ensembl transcript: ENST00000371001
  gene symbol: SYCP2
  hgvsc: ENST00000371001.2:c.*48A>G
  variant of: http://identifiers.org/hgnc/11490
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5909
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 492
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

20-58439320-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58439320
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58439320
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 57342
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000360040
  ensembl transcript: ENST00000371001
  gene symbol: SYCP2
  hgvsc: ENST00000371001.2:c.*46A>G
  variant of: http://identifiers.org/hgnc/11490
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000350162
  ensembl transcript: ENST00000357552
  gene symbol: SYCP2
  hgvsc: ENST00000357552.3:c.*46A>G
  variant of: http://identifiers.org/hgnc/11490
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13463
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23199
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4398
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3901
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5827
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5072
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5904
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5318
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

20-58439322-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58439322
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58439322
    reference: chr 20
allele count: 1415
allele frequency: 2.452084705229959e-2
allele num: 57706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000360040
  ensembl transcript: ENST00000371001
  gene symbol: SYCP2
  hgvsc: ENST00000371001.2:c.*44G>C
  variant of: http://identifiers.org/hgnc/11490
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000350162
  ensembl transcript: ENST00000357552
  gene symbol: SYCP2
  hgvsc: ENST00000357552.3:c.*44G>C
  variant of: http://identifiers.org/hgnc/11490
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 13640
  bin: 1.25e1
  variant carriers: 725
genotype depth: GenotypeDepth
  all individuals: 23276
  bin: 7.5e0
  variant carriers: 707
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 1.75e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 3.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7718
  bin: 2.5e0
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 2.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 9.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 7.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 1.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 5622
  bin: 7.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3430
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 8.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3383
  bin: 1.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 4202
  bin: 6.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 17149
  bin: 2.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 4236
  bin: 2.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 5558
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 5077
  bin: 9.75e1
  variant carriers: 1601
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 6.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 8.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 4.75e1
  variant carriers: 13
num of homozygotes: 17
population: European (Non-Finnish)
  type: Population
  allele count: 1145
  allele frequency: 4.080541696364932e-2
  allele num: 28060
  num of homozygotes: 15
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

20-58439326-GAAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58439326
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58439323
    reference: chr 20
allele count: 1
allele frequency: 1.709986320109439e-5
allele num: 58480
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000350162
  ensembl transcript: ENST00000357552
  gene symbol: SYCP2
  hgvsc: ENST00000357552.3:c.*37_*39delATT
  variant of: http://identifiers.org/hgnc/11490
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000360040
  ensembl transcript: ENST00000371001
  gene symbol: SYCP2
  hgvsc: ENST00000371001.2:c.*37_*39delATT
  variant of: http://identifiers.org/hgnc/11490
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13582
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6974
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4472
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5464
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5117
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3551
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 565
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 621
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 494
  num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: GAAT
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/20-58439333-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58439333
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58439333
    reference: chr 20
allele count: 2
allele frequency: 3.356155188615922e-5
allele num: 59592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000360040
  ensembl transcript: ENST00000371001
  gene symbol: SYCP2
  hgvsc: ENST00000371001.2:c.*33T>G
  variant of: http://identifiers.org/hgnc/11490
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000350162
  ensembl transcript: ENST00000357552
  gene symbol: SYCP2
  hgvsc: ENST00000357552.3:c.*33T>G
  variant of: http://identifiers.org/hgnc/11490
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12780
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 112
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
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genotype quality: GenotypeQuality
  all individuals: 590
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 22369
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 3594
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 280
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genotype quality: GenotypeQuality
  all individuals: 821
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4002
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

20-58439335-TTAGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58439335
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58439331
    reference: chr 20
allele count: 26
allele frequency: 4.318506461150051e-4
allele num: 60206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000360040
  ensembl transcript: ENST00000371001
  gene symbol: SYCP2
  hgvsc: ENST00000371001.2:c.*27_*30delTCTA
  variant of: http://identifiers.org/hgnc/11490
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000350162
  ensembl transcript: ENST00000357552
  gene symbol: SYCP2
  hgvsc: ENST00000357552.3:c.*27_*30delTCTA
  variant of: http://identifiers.org/hgnc/11490
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12467
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25309
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 4398
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22915
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 3619
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 495
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 7296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.819505094614265e-4
  allele num: 5496
  num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TTAGA
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

20-58439338-G-GATAAAGTATGGTGATA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58439338
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58439354
    reference: chr 20
allele count: 1
allele frequency: 1.639989504067174e-5
allele num: 60976
alternate allele: GATAAAGTATGGTGATA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000360040
  ensembl transcript: ENST00000371001
  gene symbol: SYCP2
  variant of: http://identifiers.org/hgnc/11490
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000350162
  ensembl transcript: ENST00000357552
  gene symbol: SYCP2
  variant of: http://identifiers.org/hgnc/11490
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4245
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 524
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8529
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3548
  num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ

20-58439346-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58439346
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58439345
    reference: chr 20
allele count: 1
allele frequency: 1.49026854639206e-5
allele num: 67102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000360040
  ensembl transcript: ENST00000371001
  gene symbol: SYCP2
  hgvsc: ENST00000371001.2:c.*19delA
  variant of: http://identifiers.org/hgnc/11490
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000350162
  ensembl transcript: ENST00000357552
  gene symbol: SYCP2
  hgvsc: ENST00000357552.3:c.*19delA
  variant of: http://identifiers.org/hgnc/11490
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13297
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 24037
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11170
  num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: AT
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

20-58439361-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58439361
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58439361
    reference: chr 20
allele count: 1
allele frequency: 1.210097049783393e-5
allele num: 82638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000360040
  ensembl transcript: ENST00000371001
  gene symbol: SYCP2
  hgvsc: ENST00000371001.2:c.*5T>C
  variant of: http://identifiers.org/hgnc/11490
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000350162
  ensembl transcript: ENST00000357552
  gene symbol: SYCP2
  hgvsc: ENST00000357552.3:c.*5T>C
  variant of: http://identifiers.org/hgnc/11490
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24078
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 239
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genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 658
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 497
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 12330
  num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

20-58439362-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58439362
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58439362
    reference: chr 20
allele count: 1
allele frequency: 1.196315348725924e-5
allele num: 83590
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000360040
  ensembl transcript: ENST00000371001
  gene symbol: SYCP2
  hgvsc: ENST00000371001.2:c.*4C>G
  variant of: http://identifiers.org/hgnc/11490
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000350162
  ensembl transcript: ENST00000357552
  gene symbol: SYCP2
  hgvsc: ENST00000357552.3:c.*4C>G
  variant of: http://identifiers.org/hgnc/11490
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26366
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17999
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5262
  num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

20-58439363-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58439363
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58439363
    reference: chr 20
allele count: 4
allele frequency: 4.734960581453159e-5
allele num: 84478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000360040
  ensembl transcript: ENST00000371001
  gene symbol: SYCP2
  hgvsc: ENST00000371001.2:c.*3T>A
  variant of: http://identifiers.org/hgnc/11490
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000350162
  ensembl transcript: ENST00000357552
  gene symbol: SYCP2
  hgvsc: ENST00000357552.3:c.*3T>A
  variant of: http://identifiers.org/hgnc/11490
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25086
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17592
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3601
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 43610
  num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/20-58439368-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58439368
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 58439367
    reference: chr 20
allele count: 8
allele frequency: 8.915238371185949e-5
allele num: 89734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000360040
  ensembl transcript: ENST00000371001
  gene symbol: SYCP2
  hgvsc: ENST00000371001.2:c.4590delG
  hgvsp: ENSP00000360040.2:p.Ter1531GlufsTer3
  variant of: http://identifiers.org/hgnc/11490
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000196074
  ensembl protein: ENSP00000350162
  ensembl transcript: ENST00000357552
  gene symbol: SYCP2
  hgvsc: ENST00000357552.3:c.4590delG
  hgvsp: ENSP00000350162.2:p.Ter1531GlufsTer3
  variant of: http://identifiers.org/hgnc/11490
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ter1531GlufsTer3
num of homozygotes: 0
reference allele: AC

GenotypeQuality
all individuals: 608
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7638
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6662
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4821
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6981
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 6.444683136412459e-4
allele num: 9310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12932
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

QD
type: SiteQuality
SIO_000300: 8.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

DP
type: SiteQuality
SIO_000300: 1.282112e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.03e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.04e0

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4378
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9710
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 462
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variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4195
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.273885350318471e-4
allele num: 7850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49766
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.03e-2

DP
type: SiteQuality
SIO_000300: 1.282112e6

VQSLOD
type: SiteQuality
SIO_000300: 5.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

QD
type: SiteQuality
SIO_000300: 8.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

GenotypeQuality
all individuals: 7674
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4189
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1970
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
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variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
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variant carriers: 0

GenotypeQuality
all individuals: 4387
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 256
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variant carriers: 0

GenotypeQuality
all individuals: 4512
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variant carriers: 0

GenotypeQuality
all individuals: 1784
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variant carriers: 0

GenotypeQuality
all individuals: 7697
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.995211492418196e-5
allele num: 50120
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

DP
type: SiteQuality
SIO_000300: 1.287543e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.03e-2

GenotypeQuality
all individuals: 841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4088
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variant carriers: 0

GenotypeQuality
all individuals: 1446
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 715
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variant carriers: 0

GenotypeQuality
all individuals: 1350
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variant carriers: 0

GenotypeQuality
all individuals: 7669
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variant carriers: 0

GenotypeQuality
all individuals: 624
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variant carriers: 0

GenotypeQuality
all individuals: 9103
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variant carriers: 0

GenotypeQuality
all individuals: 10687
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variant carriers: 0

GenotypeQuality
all individuals: 6905
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
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variant carriers: 0

GenotypeQuality
all individuals: 4193
bin: 9.75e1
variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.948368164333584e-5
allele num: 50434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.395585738539898e-4
allele num: 5890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13114
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.922e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.522e1

DP
type: SiteQuality
SIO_000300: 1.294997e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

MQ
type: SiteQuality
SIO_000300: 5.89e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

GenotypeQuality
all individuals: 1547
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3504
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 354
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variant carriers: 1

GenotypeQuality
all individuals: 7619
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 920
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variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6694
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.96589331746976e-5
allele num: 50430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.049229992426155e-4
allele num: 7922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13110
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.71939477303989e-4
allele num: 5816
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.358e1

VQSLOD
type: SiteQuality
SIO_000300: 3.99e-1

FS
type: SiteQuality
SIO_000300: 1.033e1

DP
type: SiteQuality
SIO_000300: 1.307035e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13170
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.972464397017634e-5
allele num: 50698
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

FS
type: SiteQuality
SIO_000300: 3.979e0

QD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.1e-3

ClippingRankSum
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SIO_000300: -1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.139e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 50842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.191993292810731e-4
allele num: 9542
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13210
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.245e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.346805e6

QD
type: SiteQuality
SIO_000300: 1.378e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.866925547009185e-5
allele num: 53564
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.478353e6

MQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

FS
type: SiteQuality
SIO_000300: 3.183e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.286e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.352e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.580000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.838370468416796e-5
allele num: 54396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.654533421575116e-4
allele num: 6044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13776
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.92e1

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 2.1435e1

VQSLOD
type: SiteQuality
SIO_000300: -1.951e0

QD
type: SiteQuality
SIO_000300: 1.095e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.48e-1

DP
type: SiteQuality
SIO_000300: 1.507468e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.255e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.217090069284065e-5
allele num: 13856
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55036
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.888e1

GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15446
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 13
allele frequency: 2.088152145977898e-4
allele num: 62256
num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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FS
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 2.14e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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Other
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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QD
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele num: 6498
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South Asian
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East Asian
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QD
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
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GenotypeQuality
all individuals: 134
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4978
bin: 6.75e1
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GenotypeQuality
all individuals: 509
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1577
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4275
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64396
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.94811320754717e-4
allele num: 10176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.421e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 4.664e0

DP
type: SiteQuality
SIO_000300: 1.737669e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

QD
type: SiteQuality
SIO_000300: 9.48e0

GenotypeQuality
all individuals: 994
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 507
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.521953510213665e-4
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 3.383e0

DP
type: SiteQuality
SIO_000300: 1.720705e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.283e1

GenotypeQuality
all individuals: 221
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3095
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 9.25e1
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GenotypeQuality
all individuals: 1357
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 104
bin: 1.25e1
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GenotypeQuality
all individuals: 1528
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4285
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4518
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63740
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.257229067136032e-4
allele num: 15908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 1.70331e6

MQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

FS
type: SiteQuality
SIO_000300: 4.994e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.369e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.775e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

QD
type: SiteQuality
SIO_000300: 1.546e1

GenotypeQuality
all individuals: 208
bin: 7.5e0
variant carriers: 90

GenotypeQuality
all individuals: 37226
bin: 9.75e1
variant carriers: 36753

GenotypeQuality
all individuals: 435
bin: 2.75e1
variant carriers: 228

GenotypeQuality
all individuals: 473
bin: 4.25e1
variant carriers: 406

GenotypeQuality
all individuals: 777
bin: 5.75e1
variant carriers: 678

GenotypeQuality
all individuals: 7760
bin: 6.25e1
variant carriers: 1200

GenotypeQuality
all individuals: 1377
bin: 8.25e1
variant carriers: 1337

GenotypeQuality
all individuals: 564
bin: 3.25e1
variant carriers: 408

GenotypeQuality
all individuals: 1411
bin: 7.75e1
variant carriers: 1347

GenotypeQuality
all individuals: 1137
bin: 5.25e1
variant carriers: 1022

GenotypeQuality
all individuals: 157
bin: 1.25e1
variant carriers: 117

GenotypeQuality
all individuals: 2220
bin: 2.25e1
variant carriers: 230

GenotypeQuality
all individuals: 1374
bin: 9.25e1
variant carriers: 1344

GenotypeQuality
all individuals: 957
bin: 4.75e1
variant carriers: 875

Other
type: Population
allele count: 499
allele frequency: 5.657596371882087e-1
allele num: 882
num of homozygotes: 135

European (Finnish)
type: Population
allele count: 3142
allele frequency: 4.87888198757764e-1
allele num: 6440
num of homozygotes: 765

Latino
type: Population
allele count: 7239
allele frequency: 6.498204667863555e-1
allele num: 11140
num of homozygotes: 2329

East Asian
type: Population
allele count: 6441
allele frequency: 7.600896860986547e-1
allele num: 8474
num of homozygotes: 2425

African
type: Population
allele count: 9409
allele frequency: 9.175931343865809e-1
allele num: 10254
num of homozygotes: 4327

South Asian
type: Population
allele count: 9459
allele frequency: 5.884658454647257e-1
allele num: 16074
num of homozygotes: 2794

European (Non-Finnish)
type: Population
allele count: 34697
allele frequency: 5.416666666666666e-1
allele num: 64056
num of homozygotes: 9255

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 2.22e1

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.202e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.17e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.365646e6

GenotypeQuality
all individuals: 1714
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
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GenotypeQuality
all individuals: 385
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GenotypeQuality
all individuals: 223
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GenotypeQuality
all individuals: 483
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GenotypeQuality
all individuals: 131
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GenotypeQuality
all individuals: 2313
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variant carriers: 0

GenotypeQuality
all individuals: 143
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variant carriers: 0

GenotypeQuality
all individuals: 416
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GenotypeQuality
all individuals: 265
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GenotypeQuality
all individuals: 2679
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 706
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17950
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.141836880445651e-5
allele num: 14002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.287e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.077e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.898e0

VQSLOD
type: SiteQuality
SIO_000300: -2.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.344861e6

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
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variant carriers: 0

GenotypeQuality
all individuals: 221
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variant carriers: 0

GenotypeQuality
all individuals: 297
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variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
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GenotypeQuality
all individuals: 2104
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
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variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15118
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13874
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.12410071942446e-4
allele num: 8896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7118
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.294905e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

QD
type: SiteQuality
SIO_000300: 1.386e1

MQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

MQ
type: SiteQuality
SIO_000300: 5.803e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.161e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.71e-1

GenotypeQuality
all individuals: 1119
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4046
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3025
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
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GenotypeQuality
all individuals: 197
bin: 7.25e1
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GenotypeQuality
all individuals: 896
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5682
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18542
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.157031924072476e-4
allele num: 4636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.097e0

VQSLOD
type: SiteQuality
SIO_000300: -3.658e0

MQ
type: SiteQuality
SIO_000300: 5.805e1

DP
type: SiteQuality
SIO_000300: 1.025532e6

GenotypeQuality
all individuals: 4145
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 526
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 6292
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 717
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 12326
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2505
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 231
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variant carriers: 1

GenotypeQuality
all individuals: 2142
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 8509
bin: 2.5e0
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GenotypeQuality
all individuals: 722
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 10601
bin: 7.5e0
variant carriers: 7

GenotypeQuality
all individuals: 141
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 6
allele frequency: 2.114164904862579e-3
allele num: 2838
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.046681806712087e-4
allele num: 7926
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 9.645061728395061e-4
allele num: 5184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 19
allele frequency: 7.736156351791531e-3
allele num: 2456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 6.337135614702154e-4
allele num: 28404
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 7.908264136022143e-4
allele num: 5058
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.155172413793103e-3
allele num: 464
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e0

VQSLOD
type: SiteQuality
SIO_000300: -1.991e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.17e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 6.5169e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 9.82386e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.911e0

GenotypeQuality
all individuals: 532
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4664
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 167
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 598
bin: 6.25e1
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GenotypeQuality
all individuals: 1085
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2787
bin: 9.75e1
variant carriers: 181

GenotypeQuality
all individuals: 5080
bin: 3.25e1
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GenotypeQuality
all individuals: 2383
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 186
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 280
bin: 7.75e1
variant carriers: 12

GenotypeQuality
all individuals: 403
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 9569
bin: 1.75e1
variant carriers: 9

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 9.369144284821987e-4
allele num: 3202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.545824847250509e-4
allele num: 3928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.971070059254095e-5
allele num: 28690
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 5.699088145896656e-4
allele num: 5264
num of homozygotes: 0

African
type: Population
allele count: 178
allele frequency: 3.201438848920863e-2
allele num: 5560
num of homozygotes: 2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.64483e5

VQSLOD
type: SiteQuality
SIO_000300: 6.07e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.332e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.581148832545481e-5
allele num: 27924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.67e-1

DP
type: SiteQuality
SIO_000300: 9.59461e5

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
SIO_000300: -2.834e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

GenotypeQuality
all individuals: 1206
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 97
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GenotypeQuality
all individuals: 1032
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525739220652406e-5
allele num: 65542
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.659e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.078e0

DP
type: SiteQuality
SIO_000300: 2.116644e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

GenotypeQuality
all individuals: 21092
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16050
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524855138761818e-5
allele num: 65580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.118011e6

MQRankSum
type: SiteQuality
SIO_000300: -4.554e0

MQ
type: SiteQuality
SIO_000300: 5.409e1

QD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 1.599e0

VQSLOD
type: SiteQuality
SIO_000300: -3.532e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.21e-1

GenotypeQuality
all individuals: 895
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
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variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 187
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GenotypeQuality
all individuals: 3241
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 1810
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variant carriers: 1

GenotypeQuality
all individuals: 22305
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GenotypeQuality
all individuals: 13419
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variant carriers: 351

GenotypeQuality
all individuals: 2268
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variant carriers: 2

GenotypeQuality
all individuals: 2560
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6162
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 867
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 5
allele frequency: 4.409948844593403e-4
allele num: 11338
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.60398505603985e-4
allele num: 16060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 328
allele frequency: 5.004119244500046e-3
allele num: 65546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.571776897287413e-4
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.242152466367713e-3
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.003602161296778e-4
allele num: 9994
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

FS
type: SiteQuality
SIO_000300: 3.533e0

DP
type: SiteQuality
SIO_000300: 2.123382e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.082e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

QD
type: SiteQuality
SIO_000300: 1.202e1

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.5e0
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GenotypeQuality
all individuals: 499
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GenotypeQuality
all individuals: 1816
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variant carriers: 0

GenotypeQuality
all individuals: 354
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GenotypeQuality
all individuals: 23435
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GenotypeQuality
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GenotypeQuality
all individuals: 1173
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GenotypeQuality
all individuals: 1079
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GenotypeQuality
all individuals: 13159
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variant carriers: 16

GenotypeQuality
all individuals: 649
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GenotypeQuality
all individuals: 941
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variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 8.25e1
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GenotypeQuality
all individuals: 6232
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524250830716703e-5
allele num: 65606
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 1.497603833865815e-3
allele num: 10016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16068
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.128665e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.351e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.392e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

GenotypeQuality
all individuals: 1037
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 23435
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variant carriers: 0

GenotypeQuality
all individuals: 354
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GenotypeQuality
all individuals: 941
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GenotypeQuality
all individuals: 685
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GenotypeQuality
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GenotypeQuality
all individuals: 1228
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GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.984025559105431e-5
allele num: 10016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.392e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

DP
type: SiteQuality
SIO_000300: 2.128665e6

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
all individuals: 1229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 868
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 13145
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.144668658172285e-5
allele num: 65612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.135652e6

QD
type: SiteQuality
SIO_000300: 1.316e1

MQ
type: SiteQuality
SIO_000300: 6.009e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 3.317e0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13145
bin: 9.75e1
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GenotypeQuality
all individuals: 216
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variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 4.75e1
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GenotypeQuality
all individuals: 541
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.215040397762585e-5
allele num: 16090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.135652e6

FS
type: SiteQuality
SIO_000300: 3.317e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 6.009e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
all individuals: 347
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variant carriers: 0

GenotypeQuality
all individuals: 2573
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GenotypeQuality
all individuals: 52
bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 26

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 1.800794833581719e-3
allele num: 16104
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.93e-1

FS
type: SiteQuality
SIO_000300: 3.203e0

QD
type: SiteQuality
SIO_000300: 1.198e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

DP
type: SiteQuality
SIO_000300: 2.139461e6

MQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.045994517209869e-4
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.939e-1

QD
type: SiteQuality
SIO_000300: 1.455e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

FS
type: SiteQuality
SIO_000300: 1.578e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

DP
type: SiteQuality
SIO_000300: 2.153666e6

MQ
type: SiteQuality
SIO_000300: 5.831e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.04627288512505e-5
allele num: 65654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

DP
type: SiteQuality
SIO_000300: 2.153666e6

QD
type: SiteQuality
SIO_000300: 1.455e1

FS
type: SiteQuality
SIO_000300: 1.578e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

VQSLOD
type: SiteQuality
SIO_000300: -6.939e-1

MQ
type: SiteQuality
SIO_000300: 5.831e1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.977286312014345e-4
allele num: 10038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.326e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 2.160878e6

FS
type: SiteQuality
SIO_000300: 5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.042658066086533e-5
allele num: 65732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.417e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

DP
type: SiteQuality
SIO_000300: 2.159739e6

QD
type: SiteQuality
SIO_000300: 1.05e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.87e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.174364040503828e-5
allele num: 16196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.122754e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.55e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.172077521293668e-5
allele num: 16202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.199e-1

DP
type: SiteQuality
SIO_000300: 2.122717e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.46e0

QD
type: SiteQuality
SIO_000300: 8.68e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.529706908156397e-5
allele num: 65372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.093758e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 1.8365e1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5399
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.340276152586005e-4
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.237e1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

VQSLOD
type: SiteQuality
SIO_000300: -2.753e-1

GenotypeQuality
all individuals: 189
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2942
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3750
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2927
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 13119
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5040
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14548
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.070970119460738e-5
allele num: 65126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 9.66e0

VQSLOD
type: SiteQuality
SIO_000300: 4.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 1.227e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-1

DP
type: SiteQuality
SIO_000300: 2.051136e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.54e-1

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7159
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13113
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2453
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4221
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.856100926473487e-5
allele num: 10146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16018
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: -8.579000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.815e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.47e0

FS
type: SiteQuality
SIO_000300: 9.167e0

DP
type: SiteQuality
SIO_000300: 2.031748e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 4.911e1

QD
type: SiteQuality
SIO_000300: 1.736e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.17e-1

QD
type: SiteQuality
SIO_000300: 9.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.944e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 2.751e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

DP
type: SiteQuality
SIO_000300: 8.46573e5

African
type: Population
allele count: 6
allele frequency: 9.724473257698541e-4
allele num: 6170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.393489707994255e-5
allele num: 41780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

DP
type: SiteQuality
SIO_000300: 8.50228e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.569000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.0286e1

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41792
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.687e0

QD
type: SiteQuality
SIO_000300: 2.47e0

FS
type: SiteQuality
SIO_000300: 6.117e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

DP
type: SiteQuality
SIO_000300: 8.52662e5

MQ
type: SiteQuality
SIO_000300: 5.554e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5424
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.355e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

DP
type: SiteQuality
SIO_000300: 8.63726e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.098e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

FS
type: SiteQuality
SIO_000300: 2.048e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41988
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

FS
type: SiteQuality
SIO_000300: 2.048e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

DP
type: SiteQuality
SIO_000300: 8.63726e5

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.098e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.355e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

FS
type: SiteQuality
SIO_000300: 4.927e0

QD
type: SiteQuality
SIO_000300: 1.042e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.8307e5

South Asian
type: Population
allele count: 2
allele frequency: 2.853067047075606e-4
allele num: 7010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.397161760475597e-5
allele num: 41716
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

DP
type: SiteQuality
SIO_000300: 8.94675e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.584283903675539e-4
allele num: 6312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7010
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

DP
type: SiteQuality
SIO_000300: 8.94675e5

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.360606203673103e-5
allele num: 42362
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.09e0

FS
type: SiteQuality
SIO_000300: 6.96e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 1.866e1

DP
type: SiteQuality
SIO_000300: 9.08673e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42318
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

QD
type: SiteQuality
SIO_000300: 4.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.759e0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-1

DP
type: SiteQuality
SIO_000300: 9.22052e5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5494
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

QD
type: SiteQuality
SIO_000300: 1.238e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.992e0

DP
type: SiteQuality
SIO_000300: 9.46186e5

VQSLOD
type: SiteQuality
SIO_000300: -3.579e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

FS
type: SiteQuality
SIO_000300: 3.497e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.02e-1

FS
type: SiteQuality
SIO_000300: 3.01e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

QD
type: SiteQuality
SIO_000300: 4.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 9.48567e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.69109161701928e-5
allele num: 42634
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.330140994945464e-4
allele num: 7518
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.506e0

MQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

QD
type: SiteQuality
SIO_000300: 6.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.56091e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.496503496503497e-3
allele num: 572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

FS
type: SiteQuality
SIO_000300: 1.095e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

QD
type: SiteQuality
SIO_000300: 1.46e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 9.73189e5

Latino
type: Population
allele count: 1
allele frequency: 1.269035532994924e-4
allele num: 7880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.627e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

QD
type: SiteQuality
SIO_000300: 6.57e0

DP
type: SiteQuality
SIO_000300: 9.67932e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5480
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.25e-1

DP
type: SiteQuality
SIO_000300: 9.53005e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQ
type: SiteQuality
SIO_000300: 5.214e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.679e0

FS
type: SiteQuality
SIO_000300: 9.412000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

QD
type: SiteQuality
SIO_000300: 8.23e0

Latino
type: Population
allele count: 25
allele frequency: 3.184713375796179e-3
allele num: 7850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 31
allele frequency: 5.652808169219548e-3
allele num: 5484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

FS
type: SiteQuality
SIO_000300: 1.989e0

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

DP
type: SiteQuality
SIO_000300: 9.49361e5

MQ
type: SiteQuality
SIO_000300: 5.846e1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

QD
type: SiteQuality
SIO_000300: 1.345e1

African
type: Population
allele count: 5
allele frequency: 8.033419023136247e-4
allele num: 6224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.94e-1

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.091e0

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

FS
type: SiteQuality
SIO_000300: 9.151999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

DP
type: SiteQuality
SIO_000300: 9.24198e5

VQSLOD
type: SiteQuality
SIO_000300: -1.557e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7678
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 1.691e0

VQSLOD
type: SiteQuality
SIO_000300: -2.202e0

DP
type: SiteQuality
SIO_000300: 9.02784e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.02e0

Latino
type: Population
allele count: 3
allele frequency: 3.923620193565263e-4
allele num: 7646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5416
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

DP
type: SiteQuality
SIO_000300: 8.548e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 3.418e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.384e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.926132806857033e-4
allele num: 41534
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

QD
type: SiteQuality
SIO_000300: 1.12e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.203e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

DP
type: SiteQuality
SIO_000300: 8.19639e5

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.613761202659729e-5
allele num: 27672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3854
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e0

MQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

QD
type: SiteQuality
SIO_000300: 1.878e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.33503e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10532
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.37531e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 5.588e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

VQSLOD
type: SiteQuality
SIO_000300: -8.054e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

QD
type: SiteQuality
SIO_000300: 1.73e1

European (Finnish)
type: Population
allele count: 53
allele frequency: 1.368094992256066e-2
allele num: 3874
num of homozygotes: 1

Latino
type: Population
allele count: 82
allele frequency: 1.344703181370941e-2
allele num: 6098
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 2.244897959183673e-2
allele num: 490
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 6.001500375093774e-3
allele num: 5332
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.017501508750754e-4
allele num: 3314
num of homozygotes: 0

South Asian
type: Population
allele count: 91
allele frequency: 8.63541468969444e-3
allele num: 10538
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

QD
type: SiteQuality
SIO_000300: 1.535e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 8.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

DP
type: SiteQuality
SIO_000300: 9.48846e5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5384
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.446438692612885e-5
allele num: 10586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3348
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

QD
type: SiteQuality
SIO_000300: 1.811e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

DP
type: SiteQuality
SIO_000300: 9.60611e5

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

MQ
type: SiteQuality
SIO_000300: 5.746e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.73e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5462
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.593371574251115e-4
allele num: 6276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29216
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.352787130564908e-5
allele num: 10692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3440
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.89388e5

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

FS
type: SiteQuality
SIO_000300: 4.825e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

QD
type: SiteQuality
SIO_000300: 1.245e1

MQRankSum
type: SiteQuality
SIO_000300: -7.39e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 7.439092430723452e-4
allele num: 10754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 5.750625803396252e-4
allele num: 29562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4024
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.99932e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.604e1

VQSLOD
type: SiteQuality
SIO_000300: 4.9e0

QD
type: SiteQuality
SIO_000300: 1.215e1

MQRankSum
type: SiteQuality
SIO_000300: -7.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.33000333000333e-5
allele num: 30030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

QD
type: SiteQuality
SIO_000300: 2.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.298e0

VQSLOD
type: SiteQuality
SIO_000300: -3.748e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 1.020035e6

MQ
type: SiteQuality
SIO_000300: 5.102e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.996344459759094e-5
allele num: 33374
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

QD
type: SiteQuality
SIO_000300: 1.046e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.453e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.106534e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42436
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.691474966170501e-4
allele num: 5912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.264109e6

QD
type: SiteQuality
SIO_000300: 5.94e0

FS
type: SiteQuality
SIO_000300: 5.579e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.361e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: -2.256e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.662786830728301e-4
allele num: 6014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.191e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -3.272e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.273517e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12484
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.4474093840338e-4
allele num: 8994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5300
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

QD
type: SiteQuality
SIO_000300: 1.198e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

DP
type: SiteQuality
SIO_000300: 1.280773e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3